Construction and comparison of the statistical coil states of unfolded and intrinsically disordered proteins from nearest-neighbor corrected conformational propensities of short peptides

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Construction and comparison of the statistical coil states of unfolded and intrinsically disordered proteins from nearest-neighbor corrected conformational propensities of short peptides is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1039/C6MB00489J
P698PubMed publication ID27545097

P50authorReinhard Schweitzer-StennerQ39189033
P2093author name stringSiobhan E Toal
P2860cites workChemical shifts as a tool for structure determinationQ40576242
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Disentangling the coil: modulation of conformational and dynamic properties by site-directed mutation in the non-native state of hen egg white lysozymeQ45027296
Predictive atomic resolution descriptions of intrinsically disordered hTau40 and α-synuclein in solution from NMR and small angle scatteringQ45720936
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Modulation of structure and dynamics by disulfide bond formation in unfolded statesQ48026075
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Highly populated turn conformations in natively unfolded tau protein identified from residual dipolar couplings and molecular simulation.Q53285737
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The effects of guanidine hydrochloride on the 'random coil' conformations and NMR chemical shifts of the peptide series GGXGGQ57908623
Structure and Dynamics of the Homologous Series of Alanine Peptides: A Joint Molecular Dynamics/NMR StudyQ58062171
Defining Long-Range Order and Local Disorder in Native α-Synuclein Using Residual Dipolar CouplingsQ58484319
The Alzheimer β-peptide shows temperature-dependent transitions between left-handed 31-helix, β-strand and random coil secondary structuresQ58486515
Neighbor-dependent Ramachandran probability distributions of amino acids developed from a hierarchical Dirichlet process modelQ21145340
A protein factor essential for microtubule assemblyQ22010837
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Randomizing the unfolded state of peptides (and proteins) by nearest neighbor interactions between unlike residues.Q30372268
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Origin of the neighboring residue effect on peptide backbone conformationQ31094215
Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil libraryQ33218650
Statistical coil model of the unfolded state: resolving the reconciliation problemQ33222591
Distribution of conformations sampled by the central amino acid residue in tripeptides inferred from amide I band profiles and NMR scalar coupling constantsQ33412499
Intrinsic propensities of amino acid residues in GxG peptides inferred from amide I' band profiles and NMR scalar coupling constantsQ33518834
Amino acids with hydrogen-bonding side chains have an intrinsic tendency to sample various turn conformations in aqueous solution.Q33891175
Defining conformational ensembles of intrinsically disordered and partially folded proteins directly from chemical shifts.Q34092011
A structural model for unfolded proteins from residual dipolar couplings and small-angle x-ray scattering.Q34144652
Polyproline II propensities from GGXGG peptides reveal an anticorrelation with beta-sheet scalesQ34212739
Protein DenaturationQ34221155
Ionized trilysine: a model system for understanding the nonrandom structure of poly-L-lysine and lysine-containing motifs in proteinsQ34308982
Disorder and order in unfolded and disordered peptides and proteins: a view derived from tripeptide conformational analysis. I. Tripeptides with long and predominantly hydrophobic side chainsQ34508241
The intrinsic conformational features of amino acids from a protein coil library and their applications in force field developmentQ34577841
pH-Independence of trialanine and the effects of termini blocking in short peptides: a combined vibrational, NMR, UVCD, and molecular dynamics studyQ34601824
Conformation of the backbone in unfolded proteins.Q36472811
Comparison between the phi distribution of the amino acids in the protein database and NMR data indicates that amino acids have various phi propensities in the random coil conformationQ36671524
'Random coil' 1H chemical shifts obtained as a function of temperature and trifluoroethanol concentration for the peptide series GGXGG.Q36718622
Reassessing random-coil statistics in unfolded proteinsQ37487200
Conformational propensities and residual structures in unfolded peptides and proteinsQ37924115
Exploring free-energy landscapes of intrinsically disordered proteins at atomic resolution using NMR spectroscopyQ38203952
A simple model for polyproline II structure in unfolded states of alanine-based peptidesQ38270402
P433issue11
P921main subjectstatisticsQ12483
nearest neighbour algorithmQ1374523
P1104number of pages13
P304page(s)3294-3306
P577publication date2016-08-22
P1433published inMolecular BioSystemsQ3319467
P1476titleConstruction and comparison of the statistical coil states of unfolded and intrinsically disordered proteins from nearest-neighbor corrected conformational propensities of short peptides
P478volume12

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cites work (P2860)
Q88055727Anticooperative Nearest-Neighbor Interactions between Residues in Unfolded Peptides and Proteins
Q50961220Dihedral angle preferences of amino acid residues forming various non-local interactions in proteins.
Q47835787Prediction of nearest neighbor effects on backbone torsion angles and NMR scalar coupling constants in disordered proteins.

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