| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/bmcbi/JacquesRGGB06 |
| P356 | DOI | 10.1186/1471-2105-7-423 |
| P932 | PMC publication ID | 1615881 |
| P698 | PubMed publication ID | 17014715 |
| P5875 | ResearchGate publication ID | 6779810 |
| P50 | author | Ryszard Brzezinski | Q42172831 |
| P2093 | author name string | Luc Gaudreau | |
| Sébastien Rodrigue | |||
| Pierre-Etienne Jacques | |||
| Jean Goulet | |||
| P2860 | cites work | A novel method for prokaryotic promoter prediction based on DNA stability | Q24791931 |
| EcoCyc: a comprehensive database resource for Escherichia coli | Q24796847 | ||
| Bioinformatic identification of novel regulatory DNA sequence motifs in Streptomyces coelicolor | Q24803266 | ||
| Genome wide identification of regulatory motifs in Bacillus subtilis | Q24806496 | ||
| Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex | Q27639013 | ||
| Fitting a mixture model by expectation maximization to discover motifs in biopolymers | Q27860556 | ||
| DNA binding sites: representation and discovery | Q28144459 | ||
| A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome | Q28288655 | ||
| Assessing computational tools for the discovery of transcription factor binding sites | Q28301463 | ||
| Fur-independent regulation of iron metabolism by Irr in Bradyrhizobium japonicum. | Q29347222 | ||
| Use of the ‘Perceptron’ algorithm to distinguish translational initiation sites inE. coli | Q29540586 | ||
| Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment | Q29615323 | ||
| Identification of Campylobacter jejuni promoter sequences | Q32127848 | ||
| Prediction of transcription regulatory sites in Archaea by a comparative genomic approach | Q33614040 | ||
| The functional and regulatory roles of sigma factors in transcription | Q33671342 | ||
| A statistical method for finding transcription factor binding sites. | Q33917019 | ||
| Function of the bacterial TATAAT -10 element as single-stranded DNA during RNA polymerase isomerization | Q33929523 | ||
| The Bradyrhizobium japonicum nolA gene encodes three functionally distinct proteins | Q33991374 | ||
| Mutational analysis of the vacA promoter provides insight into gene transcription in Helicobacter pylori. | Q33991699 | ||
| Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv | Q34153293 | ||
| Identification of the binding sites of regulatory proteins in bacterial genomes | Q34154311 | ||
| Rigorous pattern-recognition methods for DNA sequences. Analysis of promoter sequences from Escherichia coli | Q34194730 | ||
| Promoter analysis of Helicobacter pylori genes with enhanced expression at low pH. | Q34202976 | ||
| Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space | Q34267512 | ||
| Comparative genomic structure of prokaryotes | Q34371888 | ||
| RNA polymerase-promoter interactions: the comings and goings of RNA polymerase | Q34471237 | ||
| Views of transcription initiation | Q34709991 | ||
| Compilation and analysus ofBacillus SubtilisσA-dependent promoter sequences: evidence for extended contact between RNA polymerse and upstream promoter DNA | Q34759546 | ||
| The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons | Q35003675 | ||
| Compilation and analysis of DNA sequences associated with apparent streptomycete promoters | Q35061475 | ||
| Promoters of Corynebacterium glutamicum | Q35209192 | ||
| The Bradyrhizobium japonicum fegA gene encodes an iron-regulated outer membrane protein with similarity to hydroxamate-type siderophore receptors | Q35618155 | ||
| Dissection of the transcription machinery for housekeeping genes of Bradyrhizobium japonicum | Q35618874 | ||
| The regulation of bacterial transcription initiation | Q35701605 | ||
| An assessment of neural network and statistical approaches for prediction of E. coli promoter sites | Q35925778 | ||
| Studies of the Bradyrhizobium japonicum nodD1 promoter: a repeated structure for the nod box | Q36146500 | ||
| Identification of a second promoter for the metY-nusA-infB operon of Escherichia coli | Q36161977 | ||
| The sigma subunit of Escherichia coli RNA polymerase senses promoter spacing | Q37374778 | ||
| Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes | Q38668650 | ||
| SubtiList: the reference database for the Bacillus subtilis genome | Q39524042 | ||
| Discovering regulatory elements in non-coding sequences by analysis of spaced dyads | Q39543862 | ||
| Succinate dehydrogenase (Sdh) from Bradyrhizobium japonicum is closely related to mitochondrial Sdh. | Q39547495 | ||
| Transcriptional analysis of different promoters in the sar locus in Staphylococcus aureus | Q39566933 | ||
| Regulation of agr-dependent virulence genes in Staphylococcus aureus by RNAIII from coagulase-negative staphylococci. | Q39569314 | ||
| Transcription in Mycoplasma pneumoniae. | Q39600994 | ||
| A revised annotation and comparative analysis of Helicobacter pylori genomes | Q39744669 | ||
| ASAP, a systematic annotation package for community analysis of genomes | Q39790704 | ||
| Identification and analysis of 'extended -10' promoters in Escherichia coli. | Q39808956 | ||
| Alternative transcription factor sigmaSB of Staphylococcus aureus: characterization and role in transcription of the global regulatory locus sar. | Q39847538 | ||
| DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics | Q40403367 | ||
| Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes. | Q48124990 | ||
| Improved prediction of bacterial transcription start sites. | Q50736947 | ||
| Improving promoter prediction for the NNPP2.2 algorithm: a case study using Escherichia coli DNA sequences. | Q50766309 | ||
| Rapid isolation of RNA polymerase from sporulating cells of Bacillus subtilis. | Q51093898 | ||
| An exact algorithm to identify motifs in orthologous sequences from multiple species. | Q52074415 | ||
| Inferring regulatory elements from a whole genome. An analysis of Helicobacter pylori sigma(80) family of promoter signals. | Q52081088 | ||
| Characterization of the primary sigma factor of Staphylococcus aureus. | Q52520155 | ||
| Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals. | Q54517417 | ||
| RpoD Promoters in Campylobacter jejuni Exhibit a Strong Periodic Signal Instead of a −35 Box | Q57029454 | ||
| Conservation of DNA Regulatory Motifs and Discovery of New Motifs in Microbial Genomes | Q57818465 | ||
| Genome-wide analysis of bacterial promoter regions | Q73041235 | ||
| A 26 kDa protein of helicobacter pylori shows alkyl hydroperoxide reductase (AhpC) activity and the mono-cistronic transcription of the gene is affected by pH | Q73076426 | ||
| Identification and characterization of SarH1, a new global regulator of virulence gene expression in Staphylococcus aureus | Q74130068 | ||
| Sigma A recognition sites in the Bacillus subtilis genome | Q74459759 | ||
| MtbRegList, a database dedicated to the analysis of transcriptional regulation in Mycobacterium tuberculosis | Q81422910 | ||
| P304 | page(s) | 423 | |
| P577 | publication date | 2006-10-02 | |
| P1433 | published in | BMC Bioinformatics | Q4835939 |
| P1476 | title | Detection of prokaryotic promoters from the genomic distribution of hexanucleotide pairs | |
| P478 | volume | 7 |
| Q37308617 | Analysis of mechanisms of activation and repression at bacterial promoters. |
| Q38072991 | Corynebacterium glutamicum promoters: a practical approach |
| Q41936173 | Gains and unexpected lessons from genome-scale promoter mapping. |
| Q43714797 | High-quality annotation of promoter regions for 913 bacterial genomes |
| Q34980063 | Mobilizable Rolling-Circle Replicating Plasmids from Gram-Positive Bacteria: A Low-Cost Conjugative Transfer |
| Q36641279 | Prediction for human transcription start site using diversity measure with quadratic discriminant |
| Q33968979 | PromBase: a web resource for various genomic features and predicted promoters in prokaryotic genomes |
| Q36269903 | Recognition of prokaryotic and eukaryotic promoters using convolutional deep learning neural networks |
| Q33317617 | SIGffRid: a tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics |
| Q33626793 | The Legionella pneumophila GIG operon responds to gold and copper in planktonic and biofilm cultures |
| Q33333632 | Triad pattern algorithm for predicting strong promoter candidates in bacterial genomes |
Search more.