| Q57585255 | A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk |
| Q42287381 | A Metagenomic Analysis of Bacterial Microbiota in the Digestive Tract of Triatomines |
| Q56990025 | A Modular Database Architecture Enabled to Comparative Sequence Analysis |
| Q34001992 | A close relationship between primary nucleotides sequence structure and the composition of functional genes in the genome of prokaryotes. |
| Q42132014 | A novel abundance-based algorithm for binning metagenomic sequences using l-tuples. |
| Q21145308 | A universal trend among proteomes indicates an oily last common ancestor |
| Q33995905 | Abundances, identity, and growth state of actinobacteria in mountain lakes of different UV transparency |
| Q58103178 | Accelerated laboratory evolution reveals the influence of replication on the GC skew in Escherichia coli |
| Q35702351 | An AT mutational bias in the tiny GC-rich endosymbiont genome of Hodgkinia |
| Q36280569 | Analyzing large biological datasets with association networks |
| Q48076859 | Application of physical and genetic map of Rhizobium leguminosarum bv. trifolii TA1 to comparison of three closely related rhizobial genomes |
| Q34912770 | Assessment of de novo assemblers for draft genomes: a case study with fungal genomes |
| Q37595674 | Bacterial genomic G+C composition-eliciting environmental adaptation |
| Q33723657 | Bacterial population genomics and infectious disease diagnostics |
| Q38445831 | Binning sequences using very sparse labels within a metagenome |
| Q36370924 | Biogeochemistry drives diversity in the prokaryotes, fungi, and invertebrates of a Panama forest. |
| Q48082049 | Causes of insertion sequences abundance in prokaryotic genomes |
| Q35084386 | Characterization of Rhizobium grahamii extrachromosomal replicons and their transfer among rhizobia |
| Q24490933 | Community-wide analysis of microbial genome sequence signatures |
| Q33639521 | Comparative Genomics Unravels the Functional Roles of Co-occurring Acidophilic Bacteria in Bioleaching Heaps |
| Q42554405 | Comparative analyses of base compositions, DNA sizes, and dinucleotide frequency profiles in archaeal and bacterial chromosomes and plasmids. |
| Q24489522 | Comparative analysis of environmental sequences: potential and challenges |
| Q45752983 | Comparative genomic analysis provides insights into the evolution and niche adaptation of marine Magnetospira sp. QH-2 strain |
| Q35124154 | Comparative genomics and phylogenomics of hemotrophic mycoplasmas |
| Q33539447 | Comparative genomics and proteomics of Helicobacter mustelae, an ulcerogenic and carcinogenic gastric pathogen. |
| Q50568461 | Comparative genomics of green sulfur bacteria. |
| Q36287238 | Comparative metagenomic analysis of soil microbial communities across three hexachlorocyclohexane contamination levels |
| Q36631257 | Comparison of Four Comamonas Catabolic Plasmids Reveals the Evolution of pBHB To Catabolize Haloaromatics |
| Q41941422 | Comprehensive analysis of DNA polymerase III α subunits and their homologs in bacterial genomes |
| Q38376951 | Compressing proteomes: the relevance of medium range correlations |
| Q30978067 | Conditions for the evolution of gene clusters in bacterial genomes |
| Q41962413 | Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales |
| Q36323861 | Conservation and Role of Electrostatics in Thymidylate Synthase |
| Q49922699 | Convergent amino acid signatures in polyphyletic Campylobacter jejuni sub-populations suggest human niche tropism |
| Q94101727 | Current Awareness on Comparative and Functional Genomics |
| Q91875658 | Cyanobacterial phylogenetic analysis based on phylogenomics approaches render evolutionary diversification and adaptation: an overview of representative orders |
| Q33259102 | Detection of prokaryotic promoters from the genomic distribution of hexanucleotide pairs |
| Q96813585 | Detection of the enterococcal oxazolidinone/phenicol resistance gene optrA in Campylobacter coli |
| Q39741137 | Differential genomic variation between short- and long-term bacterial evolution revealed by ultradeep sequencing |
| Q35949525 | Distribution of megaplasmids in Lactobacillus salivarius and other lactobacilli |
| Q28654800 | Ecological and evolutionary significance of genomic GC content diversity in monocots |
| Q36108822 | Effects of 16S rDNA sampling on estimates of the number of endosymbiont lineages in sucking lice |
| Q42409723 | Effects of Genic Base Composition on Growth Rate in G+C-rich Genomes |
| Q24489465 | Environments shape the nucleotide composition of genomes |
| Q51478022 | Evidence for horizontal transmission from multilocus phylogeny of deep-sea mussel (Mytilidae) symbionts. |
| Q24502896 | Evidence of Selection upon Genomic GC-Content in Bacteria |
| Q30989309 | Evidence that mutation is universally biased towards AT in bacteria |
| Q64120104 | Evolution of Genomic Base Composition: From Single Cell Microbes to Multicellular Animals |
| Q42194052 | Evolution of genome base composition and genome size in bacteria |
| Q36324798 | Evolutionary interpretations of mycobacteriophage biodiversity and host-range through the analysis of codon usage bias |
| Q48058356 | Evolutionary trends of GC/AT distribution patterns in promoters |
| Q53642461 | Exploring genotypic and phenotypic diversity of microbes using microarray approaches. |
| Q33533993 | Exploring the evolutionary dynamics of plasmids: the Acinetobacter pan-plasmidome |
| Q34230656 | Extreme genome reduction in symbiotic bacteria |
| Q36804379 | Fast and sensitive taxonomic classification for metagenomics with Kaiju |
| Q36786985 | Flavin-dependent thymidylate synthase X limits chromosomal DNA replication |
| Q26800805 | From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems |
| Q28748909 | Functional Convergence in Reduced Genomes of Bacterial Symbionts Spanning 200 My of Evolution |
| Q33721945 | Functional biogeography as evidence of gene transfer in hypersaline microbial communities |
| Q46566178 | Functional genomics of bacterial pathogens: from post-genomics to therapeutic targets |
| Q42430045 | GenColors-based comparative genome databases for small eukaryotic genomes |
| Q37475453 | Gene Turnover Contributes to the Evolutionary Adaptation of Acidithiobacillus caldus: Insights from Comparative Genomics |
| Q34083854 | Genetic structure of three fosmid-fragments encoding 16S rRNA genes of the Miscellaneous Crenarchaeotic Group (MCG): implications for physiology and evolution of marine sedimentary archaea |
| Q34853821 | Genetics and evolution of the Salmonella galactose-initiated set of o antigens |
| Q33740617 | Genome Sequencing of Ralstonia solanacearum CQPS-1, a Phylotype I Strain Collected from a Highland Area with Continuous Cropping of Tobacco |
| Q53701715 | Genome variation in the symbiotic nitrogen-fixing bacterium Sinorhizobium meliloti. |
| Q40437298 | Genome-wide association of functional traits linked with Campylobacter jejuni survival from farm to fork |
| Q36843637 | Genomes of the symbiotic nitrogen-fixing bacteria of legumes. |
| Q48174403 | Genomic Diversity in the Endosymbiotic Bacterium Rhizobium leguminosarum. |
| Q60926337 | Genomic Features and Insights into the Taxonomy, Virulence, and Benevolence of Plant-Associated Species |
| Q92989361 | Genomic adaptations in information processing underpin trophic strategy in a whole-ecosystem nutrient enrichment experiment |
| Q33260281 | Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial |
| Q30583970 | Genomic sequence analysis and characterization of Sneathia amnii sp. nov |
| Q34587660 | Genomic survey of gene expression diversity in Arabidopsis thaliana. |
| Q36831089 | Genomic transition of enterococci from gut commensals to leading causes of multidrug-resistant hospital infection in the antibiotic era |
| Q24681753 | Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum |
| Q24489639 | Get the most out of your metagenome: computational analysis of environmental sequence data |
| Q27496601 | INDUS - a composition-based approach for rapid and accurate taxonomic classification of metagenomic sequences |
| Q37895333 | Identification of bacterial plasmids based on mobility and plasmid population biology. |
| Q40813011 | Immune subversion and quorum-sensing shape the variation in infectious dose among bacterial pathogens. |
| Q28276251 | Impact of genomics on the understanding of microbial evolution and classification: the importance of Darwin's views on classification |
| Q33752108 | Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06. |
| Q57618457 | Inference and Analysis of the Relative Stability of Bacterial Chromosomes |
| Q21045419 | Inferring horizontal gene transfer |
| Q61806014 | Insights Into the Evolution of Picocyanobacteria and Phycoerythrin Genes ( and ) |
| Q35182581 | Insights from 20 years of bacterial genome sequencing |
| Q38246169 | Insights into structural variations and genome rearrangements in prokaryotic genomes |
| Q41813010 | Introgression in the genus Campylobacter: generation and spread of mosaic alleles |
| Q36357968 | LAF: Logic Alignment Free and its application to bacterial genomes classification. |
| Q37827559 | Lateral genetic transfer and the construction of genetic exchange communities |
| Q25256794 | Long-range periodic patterns in microbial genomes indicate significant multi-scale chromosomal organization. |
| Q35119231 | MBBC: an efficient approach for metagenomic binning based on clustering |
| Q52838605 | MHC class I molecules exploit the low G+C content of pathogen genomes for enhanced presentation |
| Q43704503 | MLST revisited: the gene-by-gene approach to bacterial genomics. |
| Q33761996 | MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks. |
| Q34222708 | Many neglected tropical diseases may have originated in the Paleolithic or before: new insights from genetics |
| Q53606806 | Mechanisms of Evolutionary Innovation Point to Genetic Control Logic as the Key Difference Between Prokaryotes and Eukaryotes. |
| Q34213280 | Mesocosms of aquatic bacterial communities from the Cuatro Cienegas Basin (Mexico): a tool to test bacterial community response to environmental stress. |
| Q46681687 | MetaObtainer: A Tool for Obtaining Specified Species from Metagenomic Reads of Next-generation Sequencing |
| Q41934350 | Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome |
| Q33775254 | Metagenomic analyses: past and future trends |
| Q34002492 | Metagenomics: Facts and Artifacts, and Computational Challenges* |
| Q28755717 | Microbial K+ channels |
| Q56797901 | Modeling of the GC content of the substituted bases in bacterial core genomes |
| Q41341092 | Multichromosomal genome structure and confirmation of diazotrophy in novel plant-associated Burkholderia species. |
| Q34538652 | Multireplicon genome architecture of Lactobacillus salivarius |
| Q28750434 | Mushrooms: morphological complexity in the fungi |
| Q55494458 | No wisdom in the crowd: genome annotation in the era of big data - current status and future prospects. |
| Q57672787 | Origin, duplication and reshuffling of plasmid genes: Insights from Burkholderia vietnamiensis G4 genome |
| Q37636435 | Origination of the Protein Fold Repertoire from Oily Pluripotent Peptides |
| Q33313510 | Persistence drives gene clustering in bacterial genomes |
| Q41109775 | Phenotype profiling of Rhizobium leguminosarum bv. trifolii clover nodule isolates reveal their both versatile and specialized metabolic capabilities. |
| Q36459875 | Phylogenetic identification of bacterial MazF toxin protein motifs among probiotic strains and foodborne pathogens and potential implications of engineered probiotic intervention in food |
| Q40046274 | Phylogeographic, genomic, and meropenem susceptibility analysis of Burkholderia ubonensis |
| Q41073620 | Physiological and evolutionary potential of microorganisms from the Canterbury Basin subseafloor, a metagenomic approach. |
| Q35953154 | Population genomics in bacteria: a case study of Staphylococcus aureus |
| Q89422972 | Population genomics of bacterial host adaptation |
| Q33308583 | Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses |
| Q33279470 | Predicting protein function by machine learning on amino acid sequences--a critical evaluation |
| Q42876397 | Prediction of effective genome size in metagenomic samples |
| Q36199263 | Prokaryotic K(+) channels: from crystal structures to diversity |
| Q35599327 | Prokaryotic nucleotide composition is shaped by both phylogeny and the environment |
| Q33968979 | PromBase: a web resource for various genomic features and predicted promoters in prokaryotic genomes |
| Q40696824 | Pyomelanin-producing Pseudomonas aeruginosa selected during chronic infections have a large chromosomal deletion which confers resistance to pyocins |
| Q33294775 | Quantitative analysis of mutation and selection pressures on base composition skews in bacterial chromosomes |
| Q43023395 | Quantitative determination of gene strand bias in prokaryotic genomes. |
| Q37285249 | Quasispecies structure, cornerstone of hepatitis B virus infection: mass sequencing approach |
| Q34836342 | Role of selection in the emergence of lineages and the evolution of virulence in Neisseria meningitidis |
| Q33236758 | Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models. |
| Q36510308 | Separating metagenomic short reads into genomes via clustering |
| Q35689621 | Species-specific secondary metabolite production in marine actinomycetes of the genus Salinispora |
| Q31146294 | Supervised Lowess normalization of comparative genome hybridization data--application to lactococcal strain comparisons |
| Q43120334 | TAT-pathway-dependent lipoproteins as a niche-based adaptation in prokaryotes |
| Q21283918 | Tandem gene arrays in Trypanosoma brucei: comparative phylogenomic analysis of duplicate sequence variation |
| Q36257713 | The Characterization of Novel Tissue Microbiota Using an Optimized 16S Metagenomic Sequencing Pipeline |
| Q33518458 | The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes |
| Q28755842 | The evolution of domain-content in bacterial genomes |
| Q34697330 | The genetic composition of Oxalobacter formigenes and its relationship to colonization and calcium oxalate stone disease |
| Q22066109 | The loss of adaptive plasticity during long periods of environmental stasis |
| Q47693431 | The lung microbiome in health and disease. |
| Q37451319 | The olive fly endosymbiont, "Candidatus Erwinia dacicola," switches from an intracellular existence to an extracellular existence during host insect development. |
| Q26852759 | The precarious prokaryotic chromosome |
| Q22065134 | The roles of mutation accumulation and selection in loss of sporulation in experimental populations of Bacillus subtilis |
| Q41199271 | The sequence of a 1.8-mb bacterial linear plasmid reveals a rich evolutionary reservoir of secondary metabolic pathways |
| Q33525509 | The systemic imprint of growth and its uses in ecological (meta)genomics |
| Q35152339 | Toward a population genetic framework of developmental evolution: the costs, limits, and consequences of phenotypic plasticity |
| Q91660674 | Trait-based analysis of the human skin microbiome |
| Q42216121 | Universal patterns of purifying selection at noncoding positions in bacteria |
| Q35911925 | Unsupervised two-way clustering of metagenomic sequences |
| Q34196353 | Unusual genome complexity in Lactobacillus salivarius JCM1046. |
| Q46257125 | Variation in range size and dispersal capabilities of microbial taxa. |
| Q34358812 | Variation of the virus-related elements within syntenic genomes of the hyperthermophilic Archaeon Aeropyrum |
| Q35644339 | Whole-genome comparative analysis of virulence genes unveils similarities and differences between endophytes and other symbiotic bacteria |
| Q34303322 | Whole-genome plasticity among Mycobacterium avium subspecies: insights from comparative genomic hybridizations |
| Q33481229 | Word-based characterization of promoters involved in human DNA repair pathways |
| Q47814022 | Year-round shotgun metagenomes reveal stable microbial communities in agricultural soils and novel ammonia oxidizers responding to fertilization. |