A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk

scientific article published on 02 August 2018

A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1105973505
P356DOI10.1186/S12915-018-0550-3
P932PMC publication ID6090961
P698PubMed publication ID30071832

P50authorLars EngstrandQ5712843
Francis MégraudQ33105790
Helena EnrothQ51822559
Matthew D HitchingsQ56600359
Jane MikhailQ59219957
Guillaume MericQ82080815
Daniel FalushQ90490011
Elvire BerthenetQ96253070
Kaisa ThorellQ39486891
Thomas S. WilkinsonQ42321954
Ben PascoeQ42694028
P2093author name stringSamuel K Sheppard
Alain Burette
John C Atherton
Koji Yahara
Christine Varon
Sinead Smith
P2860cites workGenome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controlsQ24550675
Velvet: algorithms for de novo short read assembly using de Bruijn graphsQ24657623
Helicobacter pylori Diversity and Gastric Cancer RiskQ26774217
SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modelingQ27860614
WebLogo: A Sequence Logo GeneratorQ27860646
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and UsabilityQ27860817
Functional adaptation of BabA, the H. pylori ABO blood group antigen binding adhesinQ28273716
FastTree 2--approximately maximum-likelihood trees for large alignmentsQ28748616
Circos: an information aesthetic for comparative genomicsQ29547653
Prokka: rapid prokaryotic genome annotationQ29616643
Helicobacter pylori and gastrointestinal tract adenocarcinomasQ29618635
Inference of population structure using dense haplotype dataQ30000939
Fast and accurate automatic structure prediction with HHpred.Q30379190
Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in CampylobacterQ30444336
Global transposon mutagenesis and essential gene analysis of Helicobacter pyloriQ31129026
Risk for gastric cancer in people with CagA positive or CagA negative Helicobacter pylori infectionQ33617838
BIGSdb: Scalable analysis of bacterial genome variation at the population level.Q33767145
HpaA is essential for Helicobacter pylori colonization in miceQ34334207
Comparative genomic structure of prokaryotesQ34371888
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.Q34500266
Effectiveness of vaccination with recombinant HpaA from Helicobacter pylori is influenced by host genetic backgroundQ80474384
Translocation of Helicobacter pylori CagA into gastric epithelial cells by type IV secretionQ34507324
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysisQ34524339
Phylogeographic origin of Helicobacter pylori is a determinant of gastric cancer riskQ35098049
A reference pan-genome approach to comparative bacterial genomics: identification of novel epidemiological markers in pathogenic Campylobacter.Q35133749
Search for novel candidate mutations for metronidazole resistance in Helicobacter pylori using next-generation sequencing.Q35168946
The putative neuraminyllactose-binding hemagglutinin HpaA of Helicobacter pylori CCUG 17874 is a lipoproteinQ35597219
Helicobacter pylori bab Paralog Distribution and Association with cagA, vacA, and homA/B Genotypes in American and South Korean Clinical IsolatesQ35758495
Identification of a Latin American-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from NicaraguaQ35940300
Cloning, nucleotide sequence, and expression of a gene encoding an adhesin subunit protein of Helicobacter pyloriQ35966859
Rapid evolution of distinct Helicobacter pylori subpopulations in the AmericasQ36288463
Clinical relevance of the Helicobacter pylori gene for blood-group antigen-binding adhesinQ36556507
Genome-wide survey of codons under diversifying selection in a highly recombining bacterial species, Helicobacter pyloriQ36802930
Helicobacter pylori evolution and phenotypic diversification in a changing hostQ36823720
Chromosome painting in silico in a bacterial species reveals fine population structureQ36830876
Enhanced biofilm formation and multi-host transmission evolve from divergent genetic backgrounds in Campylobacter jejuni.Q36886566
Helicobacter pylori urease: properties and role in pathogenesisQ36924091
The fluorinase, the chlorinase and the duf-62 enzymesQ37233500
Identifying lineage effects when controlling for population structure improves power in bacterial association studiesQ37309101
How antibiotic resistances could change Helicobacter pylori treatment: A matter of geography?Q37378899
A genome-wide association study identifies a horizontally transferred bacterial surface adhesin gene associated with antimicrobial resistant strainsQ37444121
A Gene-By-Gene Approach to Bacterial Population Genomics: Whole Genome MLST of Campylobacter.Q37518187
Human and Helicobacter pylori coevolution shapes the risk of gastric diseaseQ37543810
The orphan response regulator HP1021 of Helicobacter pylori regulates transcription of a gene cluster presumably involved in acetone metabolismQ38305859
Attachment of Helicobacter pylori to human gastric epithelium mediated by blood group antigensQ38313312
A Conserved Helicobacter pylori Gene, HP0102, Is Induced Upon Contact With Gastric Cells and Has Multiple Roles in PathogenicityQ38779907
Roary: rapid large-scale prokaryote pan genome analysisQ39769468
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other treesQ39838204
Surface expression of Helicobacter pylori HpaA adhesion antigen on Vibrio cholerae, enhanced by co-expressed enterotoxigenic Escherichia coli fimbrial antigensQ40326710
Carbon Fixation Driven by Molecular Hydrogen Results in Chemolithoautotrophically Enhanced Growth of Helicobacter pyloriQ40333957
Identification of genes with fast-evolving regions in microbial genomesQ40636949
Construction of a recombinant Lactococcus lactis strain expressing a fusion protein of Omp22 and HpaA from Helicobacter pylori for oral vaccine developmentQ40654441
Helicobacter pylori strain types and risk of gastric cancer: a case-control studyQ40745734
Molecular analysis of gastric cancer identifies subtypes associated with distinct clinical outcomes.Q41038524
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectbiotechnologyQ7108
cell biologyQ7141
Helicobacter pyloriQ180556
structural biologyQ908902
genome-wide association studyQ1098876
P304page(s)84
P577publication date2018-08-02
P1433published inBMC BiologyQ2545642
P1476titleA GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk
P478volume16

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cites work (P2860)
Q89889612Benchmarking bacterial genome-wide association study methods using simulated genomes and phenotypes
Q90205931Helicobacter pylori virulence genes
Q92419388Source attribution of Campylobacter jejuni shows variable importance of chicken and ruminants reservoirs in non-invasive and invasive French clinical isolates

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