The Universal Protein Resource (UniProt).

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The Universal Protein Resource (UniProt). is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/nar/X07
P356DOI10.1093/NAR/GKL929
P932PMC publication ID1669721
P698PubMed publication ID17142230
P5875ResearchGate publication ID259193842

P50authorUniProt ConsortiumQ108296766
P2860cites workUniSave: the UniProtKB sequence/annotation version databaseQ33237207
A unified nomenclature for short-chain peptides isolated from scorpion venoms: alpha-KTx molecular subfamiliesQ33878580
Clustering of highly homologous sequences to reduce the size of large protein databasesQ33941836
UniProt archiveQ33976927
PIRSF: family classification system at the Protein Information ResourceQ34284552
Current views on scorpion toxins specific for K+-channelsQ34328007
The iProClass integrated database for protein functional analysisQ38522104
Filtering erroneous protein annotation.Q48533603
Automated annotation of microbial proteomes in SWISS-PROT.Q54670306
A novel method for automatic functional annotation of proteinsQ56891505
P433issueDatabase issue
P407language of work or nameEnglishQ1860
P304page(s)D193-7
P577publication date2006-11-16
P1433published inNucleic Acids ResearchQ135122
P1476titleThe Universal Protein Resource (UniProt).
P478volume35

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cites work (P2860)
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Q35771777Age-related thermal response: the cellular resilience of juveniles
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Q50631562Arabidopsis nuclear-encoded plastid transit peptides contain multiple sequence subgroups with distinctive chloroplast-targeting sequence motifs.
Q37428832Archaeal ubiquitin-like SAMP3 is isopeptide-linked to proteins via a UbaA-dependent mechanism
Q43713618Atlantic salmon possess three mitogen activated protein kinase kinase 6 paralogs responding differently to stress
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Q89855410Bacterial contribution to genesis of the novel germ line determinant oskar
Q21145231Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome
Q33526856Biana: a software framework for compiling biological interactions and analyzing networks
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Q33302066Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions
Q41902591CORUM: the comprehensive resource of mammalian protein complexes
Q88978176COVID-19 coronavirus vaccine design using reverse vaccinology and machine learning
Q28282806Catalytic contribution of threonine 244 in human ALDH2
Q41872137Catalytic residues in hydrolases: analysis of methods designed for ligand-binding site prediction
Q36680954Cfr and RlmN contain a single [4Fe-4S] cluster, which directs two distinct reactivities for S-adenosylmethionine: methyl transfer by SN2 displacement and radical generation
Q24650818ChEBI: a database and ontology for chemical entities of biological interest
Q33923041Characterization of a multimeric, eukaryotic prolyl aminopeptidase: an inducible and highly specific intracellular peptidase from the non-pathogenic fungus Talaromyces emersonii
Q37545253Characterization of bacteriophages Cp1 and Cp2, the strain-typing agents for Xanthomonas axonopodis pv. citri
Q28486910Characterization of quinolinate synthases from Escherichia coli, Mycobacterium tuberculosis, and Pyrococcus horikoshii indicates that [4Fe-4S] clusters are common cofactors throughout this class of enzymes
Q37878575Characterizing the complexity of enzymes on the basis of their mechanisms and structures with a bio-computational analysis.
Q37622582Charge segregation and low hydrophobicity are key features of ribosomal proteins from different organisms
Q28687107Cloud-based uniform ChIP-Seq processing tools for modENCODE and ENCODE
Q33322945ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts
Q51896316Comparative analysis of neuropeptide cleavage sites in human, mouse, rat, and cattle.
Q33325741Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: focus on point miscalls and artefactual expansions
Q30385456Complete-proteome mapping of human influenza A adaptive mutations: implications for human transmissibility of zoonotic strains.
Q31155223Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
Q43023020Computational studies reveal phosphorylation-dependent changes in the unstructured R domain of CFTR.
Q48397639Corneal decompensation in recessive cornea plana
Q27683595Crystal structure of the ω-aminotransferase from Paracoccus denitrificans and its phylogenetic relationship with other class III aminotransferases that have biotechnological potential
Q38699501Cu(II) bis(thiosemicarbazone) radiopharmaceutical binding to serum albumin: further definition of species dependence and associated substituent effects
Q30002346Cyclebase.org a comprehensive multi-organism online database of cell-cycle experiments
Q36454017DIMA 2.0--predicted and known domain interactions
Q29619285Data growth and its impact on the SCOP database: new developments
Q35863191De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite
Q33332182De-orphaning the structural proteome through reciprocal comparison of evolutionarily important structural features
Q24670617Detailed estimation of bioinformatics prediction reliability through the Fragmented Prediction Performance Plots
Q28541123Detection of OXA-1 β-lactamase gene of Klebsiella pneumoniae from blood stream infections (BSI) by conventional PCR and in-silico analysis to understand the mechanism of OXA mediated resistance
Q34094536Detection of interaction articles and experimental methods in biomedical literature
Q30365867Determination and validation of principal gene products.
Q46814791Differentiation between two-state and multi-state folding proteins based on sequence
Q33417971Discovering genes associated with dormancy in the monogonont rotifer Brachionus plicatilis.
Q38514605Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation
Q33990707Discovery of novel selective serotonin reuptake inhibitors through development of a protein-based pharmacophore.
Q42183527Discrimination of class I cyclobutane pyrimidine dimer photolyase from blue light photoreceptors by single methionine residue
Q38779742Distribution and cluster analysis of predicted intrinsically disordered protein Pfam domains
Q46911136Does protein relatedness require sequence matching? Alignment via networks in sequence space
Q36749444E1DS: catalytic site prediction based on 1D signatures of concurrent conservation
Q36969822ENFIN a network to enhance integrative systems biology
Q33327469EPO-KB: a searchable knowledge base of biomarker to protein links
Q33514118EST and microarray analysis of horn development in Onthophagus beetles
Q38642227Enriching Traditional Protein-protein Interaction Networks with Alternative Conformations of Proteins
Q39784947EpiToolKit--a web server for computational immunomics
Q34712789Equivalent indels--ambiguous functional classes and redundancy in databases
Q30421082Evaluation of research in biomedical ontologies
Q37214201Experience using web services for biological sequence analysis.
Q56920750Experiences with Aber-OWL, an Ontology Repository with OWL EL Reasoning
Q33306165Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome
Q42263716Exploration of human ORFeome: high-throughput preparation of ORF clones and efficient characterization of their protein products
Q30356608Exploring the "dark matter" of a mammalian proteome by protein structure and function modeling.
Q33307823Framework for a protein ontology
Q36156186Functional analyses of mycobacterial lipoprotein diacylglyceryl transferase and comparative secretome analysis of a mycobacterial lgt mutant.
Q34254917Functional evolution of PLP-dependent enzymes based on active-site structural similarities
Q38501462Functional modelling of an equine bronchoalveolar lavage fluid proteome provides experimental confirmation and functional annotation of equine genome sequences
Q38896504Functional proteomic analysis of corticosteroid pharmacodynamics in rat liver: Relationship to hepatic stress, signaling, energy regulation, and drug metabolism
Q41881940Further characterization of Cys-type and Ser-type anaerobic sulfatase maturating enzymes suggests a commonality in the mechanism of catalysis
Q36454245GLIDA: GPCR--ligand database for chemical genomics drug discovery--database and tools update
Q63916728GPCR NaVa database: natural variants in human G protein-coupled receptors
Q33646398Gene co-citation networks associated with worker sterility in honey bees
Q30482308Gene discovery in an invasive tephritid model pest species, the Mediterranean fruit fly, Ceratitis capitata.
Q30481196Gene regulatory networks in lactation: identification of global principles using bioinformatics.
Q33306787Gene3D: comprehensive structural and functional annotation of genomes
Q37082147Genetic variation underlying protein expression in eggs of the marine mussel Mytilus edulis
Q36454054GenoList: an integrated environment for comparative analysis of microbial genomes
Q92507706Genome Sequence of a T4-like Phage, Escherichia Phage vB_EcoM-Sa45lw, Infecting Shiga Toxin-Producing Escherichia coli Strains
Q34080279Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire
Q22066059Genome structure of the legume, Lotus japonicus
Q35214815Genome-wide analysis of phosphorylated PhoP binding to chromosomal DNA reveals several novel features of the PhoPR-mediated phosphate limitation response in Bacillus subtilis
Q35275401Genome-wide metabolic re-annotation of Ashbya gossypii: new insights into its metabolism through a comparative analysis with Saccharomyces cerevisiae and Kluyveromyces lactis
Q35931074Genomic diversity of large-plaque-forming podoviruses infecting the phytopathogen Ralstonia solanacearum
Q28606551Geroprotectors.org: a new, structured and curated database of current therapeutic interventions in aging and age-related disease
Q36570645Global analysis of patterns of gene expression during Drosophila embryogenesis
Q42080654Growth-dependent release of carbohydrate metabolism-related and antioxidant enzymes from Staphylococcus aureus strain 6 as determined by proteomic analysis.
Q34356822HINT: High-quality protein interactomes and their applications in understanding human disease
Q33930801Herpes B virus gD interaction with its human receptor--an in silico analysis approach
Q33713954High-throughput prediction of protein antigenicity using protein microarray data
Q33396813Highly diversified molecular evolution of downstream transcription start sites in rice and Arabidopsis
Q37202774Human Gene and Protein Database (HGPD): a novel database presenting a large quantity of experiment-based results in human proteomics
Q46044330Hundreds of Genes Experienced Convergent Shifts in Selective Pressure in Marine Mammals
Q34625120Hypoxia impacts large adults first: consequences in a warming world
Q33364282Identification and correction of abnormal, incomplete and mispredicted proteins in public databases
Q44119319Identification of New Features from Known Bacterial Protective Vaccine Antigens Enhances Rational Vaccine Design
Q59052323Identification of Plant Homologues of Dual Specificity Yak1-Related Kinases
Q30368054Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis.
Q38513662Identifying cancer genes from cancer mutation profiles by cancer functions
Q35738828ImmTree: database of evolutionary relationships of genes and proteins in the human immune system.
Q51148709Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia).
Q36088477In silico characterization of immunogenic epitopes presented by HLA-Cw*0401
Q37064952In silico characterization of proteins: UniProt, InterPro and Integr8.
Q41951405In silico designing of a new cysteine analogue of hirudin variant 3 for site specific PEGylation.
Q43151037In vitro characterization of AtsB, a radical SAM formylglycine-generating enzyme that contains three [4Fe-4S] clusters
Q33513747Inferring branching pathways in genome-scale metabolic networks
Q33432709Inferring stabilizing mutations from protein phylogenies: application to influenza hemagglutinin
Q33597026Insights into shell deposition in the Antarctic bivalve Laternula elliptica: gene discovery in the mantle transcriptome using 454 pyrosequencing.
Q38296593Integrated bioinformatic and phenotypic analysis of RpoN-dependent traits in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25.
Q30422192Interpretation of the consequences of mutations in protein kinases: combined use of bioinformatics and text mining
Q33370422Interspecies data mining to predict novel ING-protein interactions in human
Q41522971Isolation of Ralstonia solanacearum-infecting bacteriophages from tomato fields in Chiang Mai, Thailand, and their experimental use as biocontrol agents.
Q41789338Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases
Q36454097KNOTTIN: the knottin or inhibitor cystine knot scaffold in 2007
Q42183468Key interactions in integrin ectodomain responsible for global conformational change detected by elastic network normal-mode analysis
Q40080487Knowledge environments representing molecular entities for the virtual physiological human
Q33504371Knowledge-based variable selection for learning rules from proteomic data.
Q30002408Large-scale prediction of drug-target relationships
Q33994037Local packing density is the main structural determinant of the rate of protein sequence evolution at site level
Q42645671MACHOS: Markov clusters of homologous subsequences
Q33373816MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data
Q36483163Ma-LMM01 infecting toxic Microcystis aeruginosa illuminates diverse cyanophage genome strategies
Q33332010Mapping proteins to disease terminologies: from UniProt to MeSH
Q33379242Matching curated genome databases: a non trivial task
Q30400158Meet me halfway: when genomics meets structural bioinformatics
Q92188484Metabolic Modeling Elucidates the Transactions in the Rumen Microbiome and the Shifts Upon Virome Interactions
Q36600047Mining Missing Membrane Proteins by High-pH Reverse-Phase StageTip Fractionation and Multiple Reaction Monitoring Mass Spectrometry
Q38673966Mining databases for protein aggregation: a review
Q30597548Mining large heterogeneous data sets in drug discovery
Q33789128Modeling single nucleotide polymorphisms in the human AKR1C1 and AKR1C2 genes: implications for functional and genotyping analyses
Q30002420Modern genome annotation: the BioSapiens network
Q28548072Molecular Cloning and Functional Expression of the Equine K+ Channel KV11.1 (Ether à Go-Go-Related/KCNH2 Gene) and the Regulatory Subunit KCNE2 from Equine Myocardium
Q37505662Molecular and Proteomic Analysis of Levofloxacin and Metronidazole Resistant Helicobacter pylori
Q24649748NORINE: a database of nonribosomal peptides
Q28751567Network integration and graph analysis in mammalian molecular systems biology
Q33329675Normalizing biomedical terms by minimizing ambiguity and variability
Q47849340Novel mutations in transthyretin gene associated with hepatocellular carcinoma.
Q33332415OREST: the online resource for EST analysis.
Q33342373Onto-CC: a web server for identifying Gene Ontology conceptual clusters
Q28756938OntoGene in BioCreative II
Q21093639Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology
Q37336939Optimizing sgRNA position markedly improves the efficiency of CRISPR/dCas9-mediated transcriptional repression
Q24650129OrthoDB: the hierarchical catalog of eukaryotic orthologs
Q42968531PROCOGNATE: a cognate ligand domain mapping for enzymes
Q42154080Participation of protein sequence termini in crystal contacts
Q33957682PharmMapper server: a web server for potential drug target identification using pharmacophore mapping approach
Q24655836PhytAMP: a database dedicated to antimicrobial plant peptides
Q36454314PlantGDB: a resource for comparative plant genomics
Q30481763Predicting cancer involvement of genes from heterogeneous data
Q33345033Predicting transcriptional regulatory interactions with artificial neural networks applied to E. coli multidrug resistance efflux pumps
Q42010245Prediction of carbohydrate-binding proteins from sequences using support vector machines
Q33421104Prediction of disease-related mutations affecting protein localization
Q30379193Prediction of ligand binding sites using homologous structures and conservation at CASP8.
Q36734699Prediction of membrane-protein topology from first principles
Q30530777Probing the Xenopus laevis inner ear transcriptome for biological function
Q81136311Protein robustness promotes evolutionary innovations on large evolutionary time-scales
Q30439358Proteomic and network analysis characterize stage-specific metabolism in Trypanosoma cruzi
Q104616979Protocol for Biochemical Analysis and Structure Determination of the ZZ Domain of the E3 Ubiquitin Ligase HERC2
Q43024287Pyrimidine-specific ribonucleoside hydrolase from the archaeon Sulfolobus solfataricus--biochemical characterization and homology modeling
Q51109186RRHGE: a novel approach to classify the estrogen receptor based breast cancer subtypes.
Q36300351Ranking relations between diseases, drugs and genes for a curation task
Q34630019Rare de novo variants associated with autism implicate a large functional network of genes involved in formation and function of synapses
Q98577428Rational Design of SARS-CoV-2 Spike Glycoproteins To Increase Immunogenicity By T Cell Epitope Engineering
Q33417923Reconstruction of metabolic pathways for the cattle genome
Q36804431Relative quantitative comparisons of the extracellular protein profiles of Staphylococcus aureus UAMS-1 and its sarA, agr, and sarA agr regulatory mutants using one-dimensional polyacrylamide gel electrophoresis and nanocapillary liquid chromatograp
Q24650571Remediation of the protein data bank archive
Q37318308Restauro-G: a rapid genome re-annotation system for comparative genomics.
Q38514976SNPtoGO: characterizing SNPs by enriched GO terms
Q44291484SOLpro: accurate sequence-based prediction of protein solubility
Q33321078SciDBMaker: new software for computer-aided design of specialized biological databases
Q58906902Selecting Negative Samples for PPI Prediction Using Hierarchical Clustering Methodology
Q36453994SelenoDB 1.0 : a database of selenoprotein genes, proteins and SECIS elements
Q34079283Sequence-based classification using discriminatory motif feature selection
Q35946228Sequence-based prioritization of nonsynonymous single-nucleotide polymorphisms for the study of disease mutations
Q34040855Sma3s: a three-step modular annotator for large sequence datasets
Q33373505Splice-mediated Variants of Proteins (SpliVaP) - data and characterization of changes in signatures among protein isoforms due to alternative splicing
Q64259041Stems cells, big data and compendium-based analyses for identifying cell types, signalling pathways and gene regulatory networks
Q38375144Strategies for enhanced annotation of a microarray probe set.
Q33729773Subdivision of the MDR superfamily of medium-chain dehydrogenases/reductases through iterative hidden Markov model refinement
Q42378718Subterranean mammals show convergent regression in ocular genes and enhancers, along with adaptation to tunneling.
Q27136964SuperTarget and Matador: resources for exploring drug-target relationships
Q33312093Surviving extreme polar winters by desiccation: clues from Arctic springtail (Onychiurus arcticus) EST libraries.
Q24622765Synonymous codon usage influences the local protein structure observed
Q33745563Systems biology in heart diseases.
Q36454397The Generation Challenge Programme comparative plant stress-responsive gene catalogue
Q36454084The HGNC Database in 2008: a resource for the human genome
Q37223546The High Throughput Sequence Annotation Service (HT-SAS) - the shortcut from sequence to true Medline words
Q28251359The Histone Database: an integrated resource for histones and histone fold-containing proteins
Q44879948The InterPro database and tools for protein domain analysis
Q29547592The Jpred 3 secondary structure prediction server
Q81508823The Molecule Pages database
Q24650035The Pfam protein families database
Q28756144The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases
Q24604825The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods
Q29614575The UCSC Genome Browser Database: 2008 update
Q36818142The annotation of both human and mouse kinomes in UniProtKB/Swiss-Prot: one small step in manual annotation, one giant leap for full comprehension of genomes
Q58484021The annotation of full zinc proteomes
Q36737932The combination approach of SVM and ECOC for powerful identification and classification of transcription factor
Q48141400The conserved basic residues and the charged amino acid residues at the α-helix of the zinc finger motif regulate the nuclear transport activity of triple C2H2 zinc finger proteins.
Q31132964The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
Q36905469The minimum information required for reporting a molecular interaction experiment (MIMIx).
Q46919874The phosphatidylethanolamine level of yeast mitochondria is affected by the mitochondrial components Oxa1p and Yme1p
Q30373325The protein structure initiative structural genomics knowledgebase.
Q27496615The relationships between the isoelectric point and: length of proteins, taxonomy and ecology of organisms
Q27008038The semantic web in translational medicine: current applications and future directions
Q28530021Three-dimensional reconstruction of protein networks provides insight into human genetic disease
Q36698058Toll-like receptor 9 interaction with CpG ODN--an in silico analysis approach
Q22121982Towards completion of the Earth's proteome
Q45213859TrAnsFuSE refines the search for protein function: oxidoreductases
Q33284829Transcriptome analysis of the venom gland of the Mexican scorpion Hadrurus gertschi (Arachnida: Scorpiones).
Q57159150Transcriptomic analysis of male and female Schistosoma mekongi adult worms
Q36920168Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks
Q29614376UniRef: comprehensive and non-redundant UniProt reference clusters
Q47676854Urinary proteome analysis in patients with stable SFU grade 4 ureteropelvic junction obstruction differs from normal
Q30490274Using structural bioinformatics to investigate the impact of non synonymous SNPs and disease mutations: scope and limitations
Q36598437Using the OntoGene pipeline for the triage task of BioCreative 2012.
Q41864318Using triplet periodicity of nucleotide sequences for finding potential reading frame shifts in genes.
Q38651320Validating annotations for uncharacterized proteins in Shewanella oneidensis
Q89874428Vaxign-ML: Supervised Machine Learning Reverse Vaccinology Model for Improved Prediction of Bacterial Protective Antigens
Q28757278Web services at the European bioinformatics institute
Q28757474What everybody should know about the rat genome and its online resources
Q36393349Whole genome sequence and manual annotation of Clostridium autoethanogenum, an industrially relevant bacterium
Q37556755YMDB 2.0: a significantly expanded version of the yeast metabolome database.
Q28754287dictyBase--a Dictyostelium bioinformatics resource update
Q50898596iCataly-PseAAC: Identification of Enzymes Catalytic Sites Using Sequence Evolution Information with Grey Model GM (2,1).
Q30855671nGASP--the nematode genome annotation assessment project
Q42431979siteFiNDER|3D: a web-based tool for predicting the location of functional sites in proteins
Q35679354toxoMine: an integrated omics data warehouse for Toxoplasma gondii systems biology research.

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