scholarly article | Q13442814 |
P6179 | Dimensions Publication ID | 1111656916 |
P356 | DOI | 10.1007/S12551-018-0486-4 |
P2888 | exact match | https://scigraph.springernature.com/pub.10.1007/s12551-018-0486-4 |
P932 | PMC publication ID | 6381357 |
P698 | PubMed publication ID | 30684132 |
P50 | author | Md Humayun Kabir | Q90830675 |
Michael D O'Connor | Q91230302 | ||
P2093 | author name string | Michael D O'Connor | |
Md Humayun Kabir | |||
P2860 | cites work | Practical guidelines for the comprehensive analysis of ChIP-seq data | Q21563477 |
An integrated encyclopedia of DNA elements in the human genome | Q22122150 | ||
Core transcriptional regulatory circuitry in human embryonic stem cells | Q24322016 | ||
KEGG: kyoto encyclopedia of genes and genomes | Q24515297 | ||
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders | Q24558589 | ||
Construction of Biologically Functional Bacterial Plasmids In Vitro | Q24562887 | ||
NCBI GEO: archive for functional genomics data sets--update | Q24595691 | ||
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities | Q24617969 | ||
STRING: a database of predicted functional associations between proteins | Q24681946 | ||
A computational approach for ordering signal transduction pathway components from genomics and proteomics Data | Q24792601 | ||
Automated modelling of signal transduction networks | Q24799569 | ||
Analysis of Genomic Sequence Motifs for Deciphering Transcription Factor Binding and Transcriptional Regulation in Eukaryotic Cells | Q26768509 | ||
Multi-label multi-instance transfer learning for simultaneous reconstruction and cross-talk modeling of multiple human signaling pathways | Q27319643 | ||
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources | Q27860739 | ||
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data | Q27860819 | ||
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists | Q28131785 | ||
A genomic regulatory network for development | Q28204498 | ||
Control of developmental regulators by Polycomb in human embryonic stem cells | Q28235841 | ||
Stem cell transcriptome profiling via massive-scale mRNA sequencing | Q28282295 | ||
The Genotype-Tissue Expression (GTEx) project | Q28657968 | ||
GenePattern 2.0 | Q29614171 | ||
The evolution of gene regulation by transcription factors and microRNAs | Q29617552 | ||
limma powers differential expression analyses for RNA-sequencing and microarray studies | Q29617988 | ||
Are animal models predictive for humans? | Q30374372 | ||
Inferring gene networks from discrete expression data | Q30656509 | ||
Building an ENCODE-style data compendium on a shoestring. | Q30670611 | ||
A functional genomics approach to hematopoietic stem cell regulation. | Q31121696 | ||
Uncovering signal transduction networks from high-throughput data by integer linear programming | Q31152571 | ||
Identification of Pou5f1, Sox2, and Nanog downstream target genes with statistical confidence by applying a novel algorithm to time course microarray and genome-wide chromatin immunoprecipitation data. | Q31157497 | ||
The Universal Protein Resource (UniProt). | Q33265308 | ||
Overview of DNA microarrays: types, applications, and their future | Q33572044 | ||
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling | Q33579781 | ||
CASCADE_SCAN: mining signal transduction network from high-throughput data based on steepest descent method | Q33901662 | ||
Pathways on demand: automated reconstruction of human signaling networks | Q33917834 | ||
Retinoblastoma-binding proteins 4 and 9 are important for human pluripotent stem cell maintenance | Q33937655 | ||
GO-Bayes: Gene Ontology-based overrepresentation analysis using a Bayesian approach | Q34034776 | ||
A predictive computational framework for direct reprogramming between human cell types | Q34045862 | ||
The current state of chromatin immunoprecipitation | Q34092981 | ||
Cat-Map: putting cataract on the map | Q34248597 | ||
Structure and evolution of transcriptional regulatory networks | Q34326530 | ||
A promoter-level mammalian expression atlas | Q34412203 | ||
Foxd3 Promotes Exit from Naive Pluripotency through Enhancer Decommissioning and Inhibits Germline Specification | Q34508298 | ||
Discovering pathways by orienting edges in protein interaction networks | Q34609159 | ||
ChIP-seq and beyond: new and improved methodologies to detect and characterize protein-DNA interactions | Q34644399 | ||
An atlas of active enhancers across human cell types and tissues | Q34660689 | ||
Genome-wide remodeling of the epigenetic landscape during myogenic differentiation. | Q35022027 | ||
iRegulon: from a gene list to a gene regulatory network using large motif and track collections | Q35212382 | ||
ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression | Q35571082 | ||
Reinforcement of STAT3 activity reprogrammes human embryonic stem cells to naive-like pluripotency. | Q35775443 | ||
Application Of Small Molecules Favoring Naïve Pluripotency during Human Embryonic Stem Cell Derivation | Q35804223 | ||
Systems biology in drug discovery | Q35911464 | ||
GEMINI: a computationally-efficient search engine for large gene expression datasets | Q35934473 | ||
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update | Q36007700 | ||
Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN. | Q36240287 | ||
An encyclopedia of mouse DNA elements (Mouse ENCODE). | Q36377972 | ||
Simultaneous reconstruction of multiple signaling pathways via the prize-collecting steiner forest problem | Q36623072 | ||
LongSAGE profiling of nine human embryonic stem cell lines. | Q36672391 | ||
PASTAA: identifying transcription factors associated with sets of co-regulated genes | Q37097090 | ||
Mass spectrometry for proteomics | Q37097668 | ||
Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases | Q37140821 | ||
A quantitative model of transcription factor-activated gene expression | Q37226832 | ||
Transcription factors: from enhancer binding to developmental control | Q38032407 | ||
The 3R principle: advancing clinical application of human pluripotent stem cells | Q38091180 | ||
Functional transcription factor target discovery via compendia of binding and expression profiles. | Q38300188 | ||
XGSA: A statistical method for cross-species gene set analysis | Q38443099 | ||
Functional assays for human embryonic stem cell pluripotency | Q39636886 | ||
Identifying gene expression modules that define human cell fates | Q39827214 | ||
PathFinder: mining signal transduction pathway segments from protein-protein interaction networks | Q40829924 | ||
Alternative Routes to Induce Naïve Pluripotency in Human Embryonic Stem Cells | Q41643889 | ||
Direct comparison of distinct naive pluripotent states in human embryonic stem cells. | Q41884338 | ||
StemCellNet: an interactive platform for network-oriented investigations in stem cell biology. | Q41927963 | ||
The PathLinker app: Connect the dots in protein interaction networks | Q41987791 | ||
A compendium of genome-wide hematopoietic transcription factor maps supports the identification of gene regulatory control mechanisms | Q44891300 | ||
Efficient algorithms for detecting signaling pathways in protein interaction networks | Q46097690 | ||
HISP: A Hybrid Intelligent Approach for Identifying Directed Signaling Pathways | Q47243770 | ||
Light-focusing human micro-lenses generated from pluripotent stem cells model lens development and drug-induced cataract in vitro | Q47317638 | ||
Exploring the functional landscape of gene expression: directed search of large microarray compendia | Q47597449 | ||
ChIP-seq: welcome to the new frontier | Q47597783 | ||
Predicting gene expression from sequence | Q47765918 | ||
CellMontage: similar expression profile search server. | Q50904440 | ||
Phenotypic analysis of human embryonic stem cells. | Q51949443 | ||
Gene-environment interplay. | Q53734638 | ||
ExpressionBlast: mining large, unstructured expression databases | Q57203502 | ||
C3: An R package for cross-species compendium-based cell-type identification | Q57927007 | ||
Identification of active signaling pathways by integrating gene expression and protein interaction data | Q60923601 | ||
P4510 | describes a project that uses | limma | Q112236343 |
P433 | issue | 1 | |
P407 | language of work or name | English | Q1860 |
P921 | main subject | biophysics | Q7100 |
big data | Q858810 | ||
gene regulatory network | Q1502576 | ||
pluripotent stem cell | Q15952110 | ||
P304 | page(s) | 41-50 | |
P577 | publication date | 2019-01-25 | |
P1433 | published in | Biophysical Reviews | Q26842484 |
P1476 | title | Stems cells, big data and compendium-based analyses for identifying cell types, signalling pathways and gene regulatory networks | |
P478 | volume | 11 |
Q64259028 | Big data: the elements of good questions, open data, and powerful software | cites work | P2860 |
Search more.