| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/bioinformatics/RoiderMOVH09 |
| P356 | DOI | 10.1093/BIOINFORMATICS/BTN627 |
| P932 | PMC publication ID | 2642637 |
| P698 | PubMed publication ID | 19073590 |
| P5875 | ResearchGate publication ID | 23654494 |
| P50 | author | Martin Vingron | Q1905174 |
| Stefan Haas | Q59526355 | ||
| Thomas Manke | Q53260197 | ||
| P2093 | author name string | Helge G Roider | |
| Sean O'Keeffe | |||
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| P433 | issue | 4 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 435-442 | |
| P577 | publication date | 2008-12-09 | |
| P1433 | published in | Bioinformatics | Q4914910 |
| P1476 | title | PASTAA: identifying transcription factors associated with sets of co-regulated genes | |
| P478 | volume | 25 |
| Q27325510 | A comprehensive time-course-based multicohort analysis of sepsis and sterile inflammation reveals a robust diagnostic gene set |
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| Q47135336 | Co-expression networks reveal the tissue-specific regulation of transcription and splicing. |
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| Q41811808 | Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions |
| Q37406063 | CpG-depleted promoters harbor tissue-specific transcription factor binding signals--implications for motif overrepresentation analyses |
| Q36865220 | Cross-Tissue Regulatory Gene Networks in Coronary Artery Disease |
| Q34173996 | Detection of interacting transcription factors in human tissues using predicted DNA binding affinity |
| Q40603482 | E2F1 controls germ cell apoptosis during the first wave of spermatogenesis |
| Q35078429 | Finding genetic overlaps among diseases based on ranked gene lists. |
| Q33529031 | Functional characterization of transcription factor motifs using cross-species comparison across large evolutionary distances |
| Q89948870 | Functional effects of variation in transcription factor binding highlight long-range gene regulation by epromoters |
| Q34047556 | Genetic Adaptation and Neandertal Admixture Shaped the Immune System of Human Populations |
| Q30399799 | Genetic influences on brain gene expression in rats selected for tameness and aggression |
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| Q33791193 | Genome-wide patterns of promoter sharing and co-expression in bovine skeletal muscle |
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| Q96953978 | IGAP-integrative genome analysis pipeline reveals new gene regulatory model associated with nonspecific TF-DNA binding affinity |
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| Q43176423 | Integrating phosphoproteome and transcriptome reveals new determinants of macrophage multinucleation |
| Q41620055 | Integrative genomics of microglia implicates DLG4 (PSD95) in the white matter development of preterm infants |
| Q34778717 | Landscape of transcriptional deregulations in the preeclamptic placenta |
| Q35763278 | Loading-related regulation of transcription factor EGR2/Krox-20 in bone cells is ERK1/2 protein-mediated and prostaglandin, Wnt signaling pathway-, and insulin-like growth factor-I axis-dependent |
| Q89428130 | Lung eosinophilia induced by house dust mites or ovalbumin is modulated by nicotinic receptor α7 and inhibited by cigarette smoke |
| Q47146329 | Lung epithelial response to cigarette smoke and modulation by the nicotinic alpha 7 receptor |
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| Q33548170 | Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data |
| Q30496860 | Motif prediction to distinguish LPS-stimulated pro-inflammatory vs. antibacterial macrophage genes |
| Q35082231 | Multi-tissue analysis of co-expression networks by higher-order generalized singular value decomposition identifies functionally coherent transcriptional modules |
| Q64067093 | Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function |
| Q37477767 | Old age and the associated impairment of bones' adaptation to loading are associated with transcriptomic changes in cellular metabolism, cell-matrix interactions and the cell cycle. |
| Q36298086 | Overexpression of lipid metabolism genes and PBX1 in the contralateral breasts of women with estrogen receptor-negative breast cancer. |
| Q47388405 | Profiling of the transcriptional response to all-trans retinoic acid in breast cancer cells reveals RARE-independent mechanisms of gene expression |
| Q43103649 | Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes |
| Q38804041 | RegulatorTrail: a web service for the identification of key transcriptional regulators |
| Q33644434 | Robust target gene discovery through transcriptome perturbations and genome-wide enhancer predictions in Drosophila uncovers a regulatory basis for sensory specification. |
| Q96953990 | Seq-ing answers: Current data integration approaches to uncover mechanisms of transcriptional regulation |
| Q103803579 | Single cell RNA sequencing of human microglia uncovers a subset associated with Alzheimer's disease |
| Q64259041 | Stems cells, big data and compendium-based analyses for identifying cell types, signalling pathways and gene regulatory networks |
| Q33776339 | TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information |
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| Q90640189 | Testing Proximity of Genomic Regions to Transcription Start Sites and Enhancers Complements Gene Set Enrichment Testing |
| Q34313744 | The NSL complex regulates housekeeping genes in Drosophila. |
| Q34266253 | The dependence of expression of NF-κB-dependent genes: statistics and evolutionary conservation of control sequences in the promoter and in the 3' UTR |
| Q34242691 | The transcription factor Myc controls metabolic reprogramming upon T lymphocyte activation |
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