Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles

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Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles is …
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P819ADS bibcode2008PLoSO...3.3911P
P356DOI10.1371/JOURNAL.PONE.0003911
P932PMC publication ID2597745
P698PubMed publication ID19081792
P5875ResearchGate publication ID23662603

P50authorCelia FontanilloQ64633672
Javier De Las RivasQ30505206
Carlos PrietoQ38330566
P2093author name stringAlberto Risueño
P2860cites workAn automated method for finding molecular complexes in large protein interaction networksQ21284295
Cytoscape: a software environment for integrated models of biomolecular interaction networksQ24515682
The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple modelQ24537125
Understanding sensitivity and specificity with the right side of the brainQ24564906
Estimating genomic coexpression networks using first-order conditional independenceQ24791215
Pvclust: an R package for assessing the uncertainty in hierarchical clustering.Q51630850
False false positive ratesQ78008829
A genetic signature of interspecies variations in gene expressionQ79749665
Gene annotation and pathway mapping in KEGGQ79913927
Interleukin-6 (IL-6) and/or soluble IL-6 receptor down-regulation of human type II collagen gene expression in articular chondrocytes requires a decrease of Sp1.Sp3 ratio and of the binding activity of both factors to the COL2A1 promoterQ80161871
SP3/SP1 transcription activity regulates specific expression of collagen type X in hypertrophic chondrocytesQ81681150
Gene expression levels assessed by oligonucleotide microarray analysis and quantitative real-time RT-PCR -- how well do they correlate?Q24810251
Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platformsQ24813787
A comparison of normalization methods for high density oligonucleotide array data based on variance and biasQ27860710
Summaries of Affymetrix GeneChip probe level dataQ27860888
An efficient algorithm for large-scale detection of protein familiesQ28131838
Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networksQ28237437
A gene-coexpression network for global discovery of conserved genetic modulesQ29614451
Coexpression analysis of human genes across many microarray data setsQ30936126
Assessment and integration of publicly available SAGE, cDNA microarray, and oligonucleotide microarray expression data for global coexpression analyses.Q30999749
Filtering genes to improve sensitivity in oligonucleotide microarray data analysis.Q31121932
Differential coexpression analysis using microarray data and its application to human cancerQ33225476
Evaluation of clustering algorithms for protein-protein interaction networksQ33262820
Assembly of a functional beta interferon enhanceosome is dependent on ATF-2-c-jun heterodimer orientationQ33964471
A compendium of gene expression in normal human tissuesQ34107680
Human housekeeping genes are compactQ34212688
Human collagen Krox up-regulates type I collagen expression in normal and scleroderma fibroblasts through interaction with Sp1 and Sp3 transcription factorsQ34663211
PAP: a comprehensive workbench for mammalian transcriptional regulatory sequence analysisQ35914205
Crystal structure of ATF-2/c-Jun and IRF-3 bound to the interferon-beta enhancerQ37605234
Characterization of mismatch and high-signal intensity probes associated with Affymetrix genechipsQ48397875
Algorithm to find gene expression profiles of deregulation and identify families of disease-altered genesQ48456023
Analysis of high density expression microarrays with signed-rank call algorithmsQ48611725
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesCytoscapeQ3699942
P433issue12
P407language of work or nameEnglishQ1860
P921main subjecttranscriptomeQ252857
P304page(s)e3911
P577publication date2008-12-15
P1433published inPLOS OneQ564954
P1476titleHuman gene coexpression landscape: confident network derived from tissue transcriptomic profiles
P478volume3

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