Low cost, scalable proteomics data analysis using Amazon's cloud computing services and open source search algorithms.

scientific article

Low cost, scalable proteomics data analysis using Amazon's cloud computing services and open source search algorithms. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1021/PR800970Z
P932PMC publication ID2691775
P698PubMed publication ID19358578
P5875ResearchGate publication ID24270227

P50authorBrian HalliganQ57064270
Simon TwiggerQ77374675
P2093author name stringAndrew S Greene
Andrew K Vallejos
Joey F Geiger
P2860cites workAn automated multidimensional protein identification technology for shotgun proteomicsQ28214478
Open mass spectrometry search algorithmQ28286936
Data analysis and bioinformatics tools for tandem mass spectrometry in proteomicsQ33315747
Improved mass spectrometric proteomic profiling of the secretome of rat vascular endothelial cellsQ33623308
The Urine Proteome as a Biomarker of Radiation Injury: Submitted to Proteomics- Clinical Applications Special Issue: "Renal and Urinary Proteomics (Thongboonkerd)"Q37336558
P433issue6
P921main subjectalgorithmQ8366
cloud computingQ483639
open-source softwareQ1130645
data analysisQ1988917
P304page(s)3148-3153
P577publication date2009-06-01
P1433published inJournal of Proteome ResearchQ3186939
P1476titleLow cost, scalable proteomics data analysis using Amazon's cloud computing services and open source search algorithms
P478volume8

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cites work (P2860)
Q30542432A novel spectral library workflow to enhance protein identifications
Q34207316A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics
Q35158669Accelerating the scoring module of mass spectrometry-based peptide identification using GPUs
Q43898669An efficient parallelization of phosphorylated peptide and protein identification
Q47680249Anatomy and evolution of database search engines-a central component of mass spectrometry based proteomic workflows
Q35210958Bioinformatics on the cloud computing platform Azure.
Q34013580Biomedical cloud computing with Amazon Web Services
Q36104523Comprehensive characterization of glioblastoma tumor tissues for biomarker identification using mass spectrometry-based label-free quantitative proteomics
Q38063572Current methods for global proteome identification
Q30703115Distributed computing and data storage in proteomics: many hands make light work, and a stronger memory
Q28678424ISPTM: an iterative search algorithm for systematic identification of post-translational modifications from complex proteome mixtures
Q28746098In silico research in the era of cloud computing
Q30787979MSDA, a proteomics software suite for in-depth Mass Spectrometry Data Analysis using grid computing.
Q34021543MapReduce implementation of a hybrid spectral library-database search method for large-scale peptide identification
Q28681407Method for rapid protein identification in a large database
Q28652804Processing shotgun proteomics data on the Amazon cloud with the trans-proteomic pipeline
Q38266035Proteomics for systems toxicology
Q38896942Stone former urine proteome demonstrates a cationic shift in protein distribution compared to normal
Q36366538TRPC3 channels critically regulate hippocampal excitability and contextual fear memory
Q37346007Targeting the endothelial progenitor cell surface proteome to identify novel mechanisms that mediate angiogenic efficacy in a rodent model of vascular disease
Q21284794Translational biomedical informatics in the cloud: present and future

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