On the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics

scientific article

On the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bioinformatics/PhamPWJ10
P356DOI10.1093/BIOINFORMATICS/BTP677
P698PubMed publication ID20007255
P5875ResearchGate publication ID235720712

P50authorMarc O. WarmoesQ55382862
Connie JimenezQ56887123
Sander R PiersmaQ90227110
P2093author name stringThang V Pham
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectmass spectrometryQ180809
P304page(s)363-369
P577publication date2009-12-09
P1433published inBioinformaticsQ4914910
P1476titleOn the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics
P478volume26

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cites work (P2860)
Q33908094A bayesian mixture model for comparative spectral count data in shotgun proteomics
Q39710865A multi-model statistical approach for proteomic spectral count quantitation
Q33832543Abacus: a computational tool for extracting and pre-processing spectral count data for label-free quantitative proteomic analysis
Q35099438Abnormal chondrocyte apoptosis in the cartilage growth plate is influenced by genetic background and deletion of CHOP in a targeted mouse model of pseudoachondroplasia
Q34548839Accuracy of RNA-Seq and its dependence on sequencing depth
Q30564045An accurate paired sample test for count data
Q42551719Analysis of AKT and ERK1/2 protein kinases in extracellular vesicles isolated from blood of patients with cancer.
Q54403588Analysis of SecA2-dependent substrates in Mycobacterium marinum identifies protein kinase G (PknG) as a virulence effector.
Q42555463Analysis of the cartilage proteome from three different mouse models of genetic skeletal diseases reveals common and discrete disease signatures.
Q88035668Bacterial community changes in response to oil contamination and perennial crop cultivation
Q48099363Brain endothelial cell expression of SPARCL-1 is specific to chronic multiple sclerosis lesions and is regulated by inflammatory mediators in vitro
Q42136210Can agrin cerebrospinal fluid concentration be used as an early biomarker for Alzheimer's disease?
Q89121167Cancer cells copy migratory behavior and exchange signaling networks via extracellular vesicles
Q27310847Centromere protein F includes two sites that couple efficiently to depolymerizing microtubules
Q35722323Changes in the chondrocyte and extracellular matrix proteome during post-natal mouse cartilage development
Q59794762Characterization of paucibacillary ileal lesions in sheep with subclinical active infection by Mycobacterium avium subsp. paratuberculosis
Q36832626Comparative proteomic analysis of normal and collagen IX null mouse cartilage reveals altered extracellular matrix composition and novel components of the collagen IX interactome.
Q36105471Comparative proteomic analysis of proteins expression changes in the mammary tissue of cows infected with Escherichia coli mastitis
Q33619625Comparative shotgun proteomics using spectral count data and quasi-likelihood modeling.
Q42777671Data Analysis Pipeline for RNA-seq Experiments: From Differential Expression to Cryptic Splicing.
Q37843964Decoration of outer membrane vesicles with multiple antigens by using an autotransporter approach
Q26830221Defining the extracellular matrix using proteomics
Q39799580Differential detergent extraction of mycobacterium marinum cell envelope proteins identifies an extensively modified threonine-rich outer membrane protein with channel activity.
Q30429321Enhanced peptide quantification using spectral count clustering and cluster abundance
Q35566537Essential Role of the ESX-5 Secretion System in Outer Membrane Permeability of Pathogenic Mycobacteria
Q39967880Exosomes Secreted by Apoptosis-Resistant Acute Myeloid Leukemia (AML) Blasts Harbor Regulatory Network Proteins Potentially Involved in Antagonism of Apoptosis
Q48385629Extensive cryptic splicing upon loss of RBM17 and TDP43 in neurodegeneration models
Q35110872Global genome response of Escherichia coli O157∶H7 Sakai during dynamic changes in growth kinetics induced by an abrupt downshift in water activity.
Q33753598Global genome response of Escherichia coli O157∶H7 Sakai during dynamic changes in growth kinetics induced by an abrupt temperature downshift.
Q64118348In-Depth Proteome Analysis Highlights HepaRG Cells as a Versatile Cell System Surrogate for Primary Human Hepatocytes
Q30278389Integrative analysis to select cancer candidate biomarkers to targeted validation
Q35637392InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams.
Q41401375Label-Free LC-MS/MS Proteomic Analysis of Cerebrospinal Fluid Identifies Protein/Pathway Alterations and Candidate Biomarkers for Amyotrophic Lateral Sclerosis
Q38012172Label-free mass spectrometry-based proteomics for biomarker discovery and validation
Q33687050Large scale phosphoprotein profiling to explore Drosophila cold acclimation regulatory mechanisms.
Q37829699Less label, more free: approaches in label-free quantitative mass spectrometry.
Q90755222MSqRob takes the missing hurdle: uniting intensity- and count-based proteomics
Q37182264Maspin is a marker for early recurrence in primary stage III and IV colorectal cancer
Q35742078Metaproteomic evidence of changes in protein expression following a change in electrode potential in a robust biocathode microbiome.
Q90374310Multi-OMICS analyses unveil STAT1 as a potential modifier gene in mevalonate kinase deficiency
Q47273070Multi-Omic Biogeography of the Gastrointestinal Microbiota of a Pre-Weaned Lamb
Q39485751Multi-omics profile of the mouse dentate gyrus after kainic acid-induced status epilepticus
Q37371800Mycosins Are Required for the Stabilization of the ESX-1 and ESX-5 Type VII Secretion Membrane Complexes
Q38631853NF-κB drives acquired resistance to a novel mutant-selective EGFR inhibitor
Q35754585Neutrophil extracellular traps in sheep mastitis.
Q46579757Omega-3 fatty acids increase the unfolded protein response and improve amyloid-β phagocytosis by macrophages of patients with mild cognitive impairment
Q42190394Oxalyl-coenzyme A reduction to glyoxylate is the preferred route of oxalate assimilation in Methylobacterium extorquens AM1.
Q37396989Physiological Response of Escherichia coli O157:H7 Sakai to Dynamic Changes in Temperature and Water Activity as Experienced during Carcass Chilling
Q37123820Production and release of antimicrobial and immune defense proteins by mammary epithelial cells following Streptococcus uberis infection of sheep
Q33599591Protein mass spectra data analysis for clinical biomarker discovery: a global review
Q34958339Proteins and an inflammatory network expressed in colon tumors
Q35083315Proteomic analysis of C2C12 myoblast and myotube exosome-like vesicles: a new paradigm for myoblast-myotube cross talk?
Q92794998Proteomic analysis of gemcitabine-resistant pancreatic cancer cells reveals that microtubule-associated protein 2 upregulation associates with taxane treatment
Q42209745Proteomic analysis of the multimeric nuclear egress complex of human cytomegalovirus
Q38419611Proteomic analysis of three Borrelia burgdorferi sensu lato native species and disseminating clones: relevance for Lyme vaccine design
Q38492505Proteomic profiling of Mycobacterium tuberculosis identifies nutrient-starvation-responsive toxin-antitoxin systems
Q35191887Proteomics and pathway analyses of the milk fat globule in sheep naturally infected by Mycoplasma agalactiae provide indications of the in vivo response of the mammary epithelium to bacterial infection.
Q36832502Proteomics of genetically engineered mouse mammary tumors identifies fatty acid metabolism members as potential predictive markers for cisplatin resistance
Q24632628Proteomics of mouse BRCA1-deficient mammary tumors identifies DNA repair proteins with potential diagnostic and prognostic value in human breast cancer
Q30985868QPROT: Statistical method for testing differential expression using protein-level intensity data in label-free quantitative proteomics.
Q40432637Rapid label-free quantitative analysis of the E. coli BL21(DE3) inner membrane proteome
Q67199187SLAM-ITseq: sequencing cell type-specific transcriptomes without cell sorting
Q28551815Secretome Profiling of Periodontal Ligament from Deciduous and Permanent Teeth Reveals a Distinct Expression Pattern of Laminin Chains
Q37665387Secretome proteomics reveals candidate non-invasive biomarkers of BRCA1 deficiency in breast cancer
Q67199182Sequencing cell-type-specific transcriptomes with SLAM-ITseq
Q35117883Sex- and tissue-specific methylome changes in brains of mice perinatally exposed to lead
Q39429312Simulated linear test applied to quantitative proteomics
Q36446071Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods.
Q36521519Statistical methods for identifying differentially expressed genes in RNA-Seq experiments
Q38507628Subnuclear proteomics in colorectal cancer: identification of proteins enriched in the nuclear matrix fraction and regulation in adenoma to carcinoma progression.
Q37235596Surface proteomic analysis of osteosarcoma identifies EPHA2 as receptor for targeted drug delivery
Q47184257The AMPA receptor-associated protein Shisa7 regulates hippocampal synaptic function and contextual memory
Q35692093The Drosophila Helicase Maleless (MLE) is Implicated in Functions Distinct From its Role in Dosage Compensation
Q35643877The ethylmalonyl-CoA pathway is used in place of the glyoxylate cycle by Methylobacterium extorquens AM1 during growth on acetate.
Q48850498The proteome of the locus ceruleus in Parkinson's disease: relevance to pathogenesis
Q92686047Tumor Heterogeneity Underlies Differential Cisplatin Sensitivity in Mouse Models of Small-Cell Lung Cancer
Q37847080Utility of gel-free, label-free shotgun proteomics approaches to investigate microorganisms.
Q40791158Whole gel processing procedure for GeLC-MS/MS based proteomics

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