| scholarly article | Q13442814 |
| P2093 | author name string | Erin A Tripp | |
| Yongbin Zhuang | |||
| P2860 | cites work | PLAZA: a comparative genomics resource to study gene and genome evolution in plants | Q38432649 |
| ADAPTIVE SIGNIFICANCE OF FLOWER COLOR AND INTER-TRAIT CORRELATIONS IN AN IPOMOPSIS HYBRID ZONE. | Q38501921 | ||
| A guard-cell-specific MYB transcription factor regulates stomatal movements and plant drought tolerance | Q38951335 | ||
| Ecological transition predictably associated with gene degeneration | Q39103015 | ||
| Complete chloroplast genome sequences of Praxelis (Eupatorium catarium Veldkamp), an important invasive species | Q39627740 | ||
| Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. | Q40721941 | ||
| Reference genomes and transcriptomes of Nicotiana sylvestris and Nicotiana tomentosiformis | Q41845517 | ||
| The transcription factor HIG1/MYB51 regulates indolic glucosinolate biosynthesis in Arabidopsis thaliana | Q42033543 | ||
| Erratum to: A survey of best practices for RNA-seq data analysis | Q42401162 | ||
| Flower color microevolution in wild radish: evolutionary response to pollinator-mediated selection | Q43879410 | ||
| MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations | Q44439585 | ||
| Characterization of Arabidopsis MYB transcription factor gene AtMYB17 and its possible regulation by LEAFY and AGL15. | Q45259991 | ||
| MYB72, a node of convergence in induced systemic resistance triggered by a fungal and a bacterial beneficial microbe | Q46176518 | ||
| Multiple evolution of flavonoid 3',5'-hydroxylase | Q46737012 | ||
| MYB72 is required in early signaling steps of rhizobacteria-induced systemic resistance in Arabidopsis. | Q46792338 | ||
| HAG2/MYB76 and HAG3/MYB29 exert a specific and coordinated control on the regulation of aliphatic glucosinolate biosynthesis in Arabidopsis thaliana | Q46879795 | ||
| Molecular analysis of the anthocyanin2 gene of petunia and its role in the evolution of flower color | Q47937371 | ||
| Maize anthocyanin regulatory gene pl is a duplicate of c1 that functions in the plant | Q48088365 | ||
| A chemical complementation approach reveals genes and interactions of flavonoids with other pathways. | Q50762575 | ||
| Members of an R2R3-MYB transcription factor family in Petunia are developmentally and environmentally regulated to control complex floral and vegetative pigmentation patterning. | Q51891342 | ||
| Allele substitution at a flower colour locus produces a pollinator shift in monkeyflowers | Q52641523 | ||
| Is floral specialization an evolutionary dead-end? Pollination system transitions in Ruellia (Acanthaceae). | Q52690443 | ||
| Evolutionary Relationships Within the Species-Rich Genus Ruellia (Acanthaceae) | Q54548277 | ||
| Taxonomic Revision of Ruellia Section Chiropterophila (Acanthaceae): a Lineage of Rare and Endemic Species from Mexico | Q54640286 | ||
| Floral isolation between Aquilegia formosa and Aquilegia pubescens | Q55890007 | ||
| The First 50 Plant Genomes | Q56003850 | ||
| Adaptive Significance of Flower Color and Inter-Trait Correlations in an Ipomopsis Hybrid Zone | Q57045437 | ||
| Repetitive DNA Elements as a Major Component of Plant Genomes | Q58884485 | ||
| WHY ARE BIRD-VISITED FLOWERS PREDOMINANTLY RED? | Q88196523 | ||
| The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine | Q21128789 | ||
| Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties | Q21146710 | ||
| The draft genome and transcriptome of Cannabis sativa | Q21184028 | ||
| Gene finding in novel genomes | Q21284285 | ||
| BLAST+: architecture and applications | Q21284368 | ||
| TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions | Q21999527 | ||
| Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation | Q22065125 | ||
| The Solanum commersonii Genome Sequence Provides Insights into Adaptation to Stress Conditions and Genome Evolution of Wild Potato Relatives | Q22065725 | ||
| Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization | Q22066258 | ||
| Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species | Q22122071 | ||
| Draft genome of the wheat A-genome progenitor Triticum urartu | Q22122138 | ||
| Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation | Q22122140 | ||
| The tomato genome sequence provides insights into fleshy fruit evolution | Q22122151 | ||
| Analysis of the bread wheat genome using whole-genome shotgun sequencing | Q22122152 | ||
| Genome sequence and analysis of the tuber crop potato | Q22122169 | ||
| Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae) | Q22162487 | ||
| MEGA6: Molecular Evolutionary Genetics Analysis version 6.0 | Q24498082 | ||
| MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform | Q24540347 | ||
| Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
| Rates and patterns of chloroplast DNA evolution | Q24561398 | ||
| OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs | Q24595539 | ||
| SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing | Q24629733 | ||
| Fast and accurate short read alignment with Burrows-Wheeler transform | Q24653853 | ||
| BLAT—The BLAST-Like Alignment Tool | Q24682492 | ||
| PyEvolve: a toolkit for statistical modelling of molecular evolution | Q24806470 | ||
| Fast-Find: a novel computational approach to analyzing combinatorial motifs | Q25257017 | ||
| Pfam: clans, web tools and services | Q25257103 | ||
| MYB transcription factor genes as regulators for plant responses: an overview | Q26827201 | ||
| Fast gapped-read alignment with Bowtie 2 | Q27860699 | ||
| The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 | Q27860747 | ||
| PAML 4: phylogenetic analysis by maximum likelihood | Q27860834 | ||
| The Sequence Alignment/Map format and SAMtools | Q27860966 | ||
| The Gene Ontology (GO) database and informatics resource | Q27860988 | ||
| Ancient DNA and the rewriting of human history: be sparing with Occam's razor | Q28067158 | ||
| Designer synthetic media for studying microbial-catalyzed biofuel production | Q28651065 | ||
| Expansion and subfunctionalisation of flavonoid 3',5'-hydroxylases in the grapevine lineage | Q28740348 | ||
| Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences | Q29547172 | ||
| An improved general amino acid replacement matrix | Q29547248 | ||
| ABySS: a parallel assembler for short read sequence data | Q29547263 | ||
| Trimmomatic: a flexible trimmer for Illumina sequence data | Q29547278 | ||
| UniProt: a hub for protein information | Q29547457 | ||
| Repbase Update, a database of eukaryotic repetitive elements | Q29547460 | ||
| WEGO: a web tool for plotting GO annotations | Q29616658 | ||
| Gene prediction with a hidden Markov model and a new intron submodel | Q29616754 | ||
| SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler | Q29616805 | ||
| Scaffolding pre-assembled contigs using SSPACE | Q29616857 | ||
| The first draft genome of the aquatic model plant Lemna minor opens the route for future stress physiology research and biotechnological applications | Q30140976 | ||
| Unravelling the genome of Holy basil: an "incomparable" "elixir of life" of traditional Indian medicine | Q30410813 | ||
| A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries | Q30475515 | ||
| Large and linked in scientific publishing | Q30486092 | ||
| Characterization of miRNAs associated with Botrytis cinerea infection of tomato leaves | Q35543515 | ||
| Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis | Q35745183 | ||
| The Amaranth Genome: Genome, Transcriptome, and Physical Map Assembly. | Q36206954 | ||
| A comprehensive characterization of simple sequence repeats in pepper genomes provides valuable resources for marker development in Capsicum | Q36438371 | ||
| PlantGDB: a resource for comparative plant genomics | Q36454314 | ||
| Functional evolution of an anthocyanin pathway enzyme during a flower color transition | Q36586464 | ||
| The MaSuRCA genome assembler | Q37236854 | ||
| Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing | Q37353224 | ||
| AtMYB14 Regulates Cold Tolerance in Arabidopsis | Q37436692 | ||
| MYB transcription factors in Arabidopsis | Q37776860 | ||
| Repetitive sequences in plant nuclear DNA: types, distribution, evolution and function | Q38240774 | ||
| Analysis of bHLH and MYB domain proteins: species-specific regulatory differences are caused by divergent evolution of target anthocyanin genes | Q38335185 | ||
| Arabidopsis MYB30 is a direct target of BES1 and cooperates with BES1 to regulate brassinosteroid-induced gene expression. | Q38357084 | ||
| agriGO: a GO analysis toolkit for the agricultural community | Q38373934 | ||
| A review of microsatellite markers and their applications in rice breeding programs to improve blast disease resistance | Q30696311 | ||
| De novo genome assembly of the economically important weed horseweed using integrated data from multiple sequencing platforms | Q30850533 | ||
| Novel bioresources for studies of Brassica oleracea: identification of a kale MYB transcription factor responsible for glucosinolate production | Q31125742 | ||
| Alteration of a single amino acid changes the substrate specificity of dihydroflavonol 4-reductase | Q32029014 | ||
| Genome comparison using Gene Ontology (GO) with statistical testing | Q33253541 | ||
| UniProtKB/Swiss-Prot | Q33320620 | ||
| Auxin homeostasis during lateral root development under drought condition | Q33348032 | ||
| Analysis of the grape MYB R2R3 subfamily reveals expanded wine quality-related clades and conserved gene structure organization across Vitis and Arabidopsis genomes | Q33353855 | ||
| AtMYB93 is a novel negative regulator of lateral root development in Arabidopsis | Q33358568 | ||
| Regularized gene selection in cancer microarray meta-analysis | Q33396835 | ||
| Why assembling plant genome sequences is so challenging | Q33565173 | ||
| A phylogenetic examination of the primary anthocyanin production pathway of the Plantae | Q33690528 | ||
| Biogeography of the ecosystems of the healthy human body | Q33744957 | ||
| EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics | Q33747691 | ||
| Flavanols and anthocyanins in cardiovascular health: a review of current evidence | Q33853907 | ||
| Proteinortho: detection of (co-)orthologs in large-scale analysis. | Q33884033 | ||
| Draft genome sequence of eggplant (Solanum melongena L.): the representative solanum species indigenous to the old world | Q34042077 | ||
| A draft genome sequence of Nicotiana benthamiana to enhance molecular plant-microbe biology research | Q34293062 | ||
| Architecture and evolution of a minute plant genome. | Q34344190 | ||
| BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs | Q34480034 | ||
| CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences | Q34519290 | ||
| Mojo Hand, a TALEN design tool for genome editing applications. | Q34549528 | ||
| Draft genome sequence of the rubber tree Hevea brasiliensis | Q34572560 | ||
| A fast, lock-free approach for efficient parallel counting of occurrences of k-mers | Q34635910 | ||
| The evolutionary consequences of polyploidy | Q34709080 | ||
| Sexually-dimorphic targeting of functionally-related genes in COPD | Q34728356 | ||
| The complete chloroplast genome of banana (Musa acuminata, Zingiberales): insight into plastid monocotyledon evolution. | Q34807064 | ||
| GMATo: A novel tool for the identification and analysis of microsatellites in large genomes | Q34824915 | ||
| The draft genome of Primula veris yields insights into the molecular basis of heterostyly | Q35008742 | ||
| Fragment assignment in the cloud with eXpress-D | Q35061835 | ||
| The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community | Q35158851 | ||
| Dihydroflavonol 4-reductase genes encode enzymes with contrasting substrate specificity and show divergent gene expression profiles in Fragaria species. | Q35418418 | ||
| Extensive error in the number of genes inferred from draft genome assemblies | Q35488229 | ||
| P433 | issue | 2 | |
| P921 | main subject | Acanthaceae | Q53475 |
| Ruellia speciosa | Q15357790 | ||
| P304 | page(s) | 179-192 | |
| P577 | publication date | 2017-04-01 | |
| P1433 | published in | DNA Research | Q5205732 |
| P1476 | title | The draft genome of Ruellia speciosa (Beautiful Wild Petunia: Acanthaceae). | |
| P478 | volume | 24 |
| Q92999730 | Complete Chloroplast Genome Sequence of Justicia flava: Genome Comparative Analysis and Phylogenetic Relationships among Acanthaceae |
| Q92857906 | De novo Assembly of the Pokeweed Genome Provides Insight Into Pokeweed Antiviral Protein (PAP) Gene Expression |
| Q91657247 | Draft genome of Tanacetum cinerariifolium, the natural source of mosquito coil |
| Q28563954 | Genome-scale transcriptional study of hybrid effects and regulatory divergence in an F1 hybrid Ruellia (Wild Petunias: Acanthaceae) and its parents |
| Q90403012 | Orthologous nuclear markers and new transcriptomes that broadly cover the phylogenetic diversity of Acanthaceae |
| Q42372765 | RADseq dataset with 90% missing data fully resolves recent radiation of Petalidium (Acanthaceae) in the ultra-arid deserts of Namibia |
| Q52593665 | The Complete Chloroplast Genome of Heimia myrtifolia and Comparative Analysis within Myrtales. |
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