Diverse alkane hydroxylase genes in microorganisms and environments

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Diverse alkane hydroxylase genes in microorganisms and environments is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1048349696
P356DOI10.1038/SREP04968
P932PMC publication ID4021335
P698PubMed publication ID24829093
P5875ResearchGate publication ID262341666

P2093author name stringXiao-Lei Wu
Yue-Qin Tang
Chang-Qiao Chi
Hui Fang
Yong Nie
Jie-Liang Liang
Guo-Li Lai
She-Lian Lu
P2860cites workIntegrative analysis of environmental sequences using MEGAN4Q24604814
MUSCLE: multiple sequence alignment with high accuracy and high throughputQ24613456
SMART 7: recent updates to the protein domain annotation resourceQ24622634
IslandViewer: an integrated interface for computational identification and visualization of genomic islandsQ24648176
A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common historyQ24671811
Selection in the evolution of gene duplicationsQ24802293
The neighbor-joining method: a new method for reconstructing phylogenetic treesQ25939010
Profile hidden Markov modelsQ27860536
Environmental genome shotgun sequencing of the Sargasso SeaQ27860605
Functional analysis of alkane hydroxylases from gram-negative and gram-positive bacteriaQ28486383
Eight histidine residues are catalytically essential in a membrane-associated iron enzyme, stearoyl-CoA desaturase, and are conserved in alkane hydroxylase and xylene monooxygenaseQ28564292
ARB: a software environment for sequence dataQ29547354
The Ribosomal Database Project: improved alignments and new tools for rRNA analysisQ29547434
Accelerated Profile HMM SearchesQ29547576
The SILVA ribosomal RNA gene database project: improved data processing and web-based toolsQ29547623
Microbial Biosynthesis of AlkanesQ29617243
Alkane hydroxylases involved in microbial alkane degradationQ31091349
IMG/M: a data management and analysis system for metagenomesQ31132895
Functional expression system for cytochrome P450 genes using the reductase domain of self-sufficient P450RhF from Rhodococcus sp. NCIMB 9784.Q33224282
Acidophilic microbial communities associated with a natural, biodegraded hydrocarbon seepage.Q33252486
Responses of microbial communities in Arctic sea ice after contamination by crude petroleum oil.Q33297504
Bacterial catabolic transposonsQ33541342
Insect pheromones--an overview of biosynthesis and endocrine regulationQ33687342
Genomic and functional adaptation in surface ocean planktonic prokaryotesQ33737383
Orthologs, paralogs and genome comparisonsQ33801581
Parallel evolution of chimeric fusion genesQ33914023
Horizontal gene transfer in bacterial and archaeal complete genomesQ33925228
Molecular diversity and ecology of microbial planktonQ33990079
Metagenomic analysis of the bioremediation of diesel-contaminated Canadian high arctic soilsQ34130979
Plant litter and soil type drive abundance, activity and community structure of alkB harbouring microbes in different soil compartmentsQ34188943
Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531.Q34295143
Rubredoxins involved in alkane oxidationQ34307132
Cytochrome P450 alkane hydroxylases of the CYP153 family are common in alkane-degrading eubacteria lacking integral membrane alkane hydroxylasesQ34315977
Horizontal gene transfer, genome innovation and evolutionQ34447824
Gene fusion/fission is a major contributor to evolution of multi-domain bacterial proteinsQ34511578
The early stages of duplicate gene evolution.Q34790619
Degradation of petroleum hydrocarbons (C6-C40) and crude oil by a novel Dietzia strain.Q52838215
Enzymatic omega-oxidation. I. Electon carriers in fatty acid and hydrocarbon hydroxylation.Q54485204
Evolution by gene duplication: an updateQ55879025
Biosynthesis of hydrocarbons by algae: Decarboxylation of stearic acid to N-heptadecane inAnacystis nidulans determined by(13)C- and(2)H-labeling and(13)C nuclear magnetic resonanceQ88119214
A novel class of self-sufficient cytochrome P450 monooxygenases in prokaryotes.Q34990699
Biophysical and biochemical characteristics of cutin, a plant barrier biopolymerQ35069402
Complete genome sequence of Amycolicicoccus subflavus DQS3-9A1T, an actinomycete isolated from crude oil-polluted soilQ35192063
Two novel alkane hydroxylase-rubredoxin fusion genes isolated from a Dietzia bacterium and the functions of fused rubredoxin domains in long-chain n-alkane degradationQ35361809
Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoirQ35720751
Fractionation of inducible alkane hydroxylase activity in Pseudomonas putida and characterization of hydroxylase-negative plasmid mutationsQ36415196
Cytochrome P450--redox partner fusion enzymes.Q36615426
Characterization of a novel Rieske-type alkane monooxygenase system in Pusillimonas sp. strain T7-7Q36760622
Sealing plant surfaces: cuticular wax formation by epidermal cells.Q37077674
The genome of the moderate halophile Amycolicicoccus subflavus DQS3-9A1(T) reveals four alkane hydroxylation systems and provides some clues on the genetic basis for its adaptation to a petroleum environmentQ37096205
Degradation of alkanes by bacteria.Q37609490
Microbial enhanced oil recovery (MEOR).Q37690980
Evaluating the assignment of alkB terminal restriction fragments and sequence types to distinct bacterial taxaQ39762436
Horizontal gene transfer: evidence and possible consequencesQ40613985
P450 superfamily: update on new sequences, gene mapping, accession numbers and nomenclature.Q41142872
Culturing captures members of the soil rare biosphereQ42450552
Involvement of an alkane hydroxylase system of Gordonia sp. strain SoCg in degradation of solid n-alkanesQ42684259
Isolation and characterization of long-chain-alkane degrading Bacillus thermoleovorans from deep subterranean petroleum reservoirs.Q43018460
Isolation and characterization of a novel thermophilic Bacillus strain degrading long-chain n-alkanesQ43020084
Identification of different alkane hydroxylase systems in Rhodococcus ruber strain SP2B, an hexane-degrading actinomycete.Q43242636
Variability of hydrocarbon and fatty acid components in cultures of the filamentous cyanobacterium Scytonema sp. isolated from microbial community "black cover" of limestone walls in JerusalemQ44258461
Characterization of two alkane hydroxylase genes from the marine hydrocarbonoclastic bacterium Alcanivorax borkumensisQ44761428
Characterization of a CYP153 alkane hydroxylase gene in a Gram-positive Dietzia sp. DQ12-45-1b and its "team role" with alkW1 in alkane degradationQ45182253
Functional analysis of long-chain n-alkane degradation by Dietzia spp.Q45835347
Hydrocarbons of blue-green algae: geochemical significanceQ47764604
The Pseudomonas oleovorans alkane hydroxylase gene. Sequence and expressionQ48299812
Analysis of Pseudomonas putida alkane-degradation gene clusters and flanking insertion sequences: evolution and regulation of the alk genesQ48361687
Molecular screening for alkane hydroxylase genes in Gram-negative and Gram-positive strainsQ48380549
P275copyright licenseCreative Commons Attribution-NonCommercial-NoDerivs 3.0 UnportedQ19125045
P6216copyright statuscopyrightedQ50423863
P407language of work or nameEnglishQ1860
P921main subjectalkaneQ41581
P304page(s)4968
P577publication date2014-05-15
P1433published inScientific ReportsQ2261792
P1476titleDiverse alkane hydroxylase genes in microorganisms and environments
P478volume4

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cites work (P2860)
Q35525394Alkane hydroxylase genes in psychrophile genomes and the potential for cold active catalysis.
Q64102443An Ionic Limit to Life in the Deep Subsurface
Q90225179An assessment of the microbial community in an urban fringing tidal marsh with an emphasis on petroleum hydrocarbon degradative genes
Q63640736An improved estimation of tRNA expression to better elucidate the coevolution between tRNA abundance and codon usage in bacteria
Q39303426Assessment of the horizontal transfer of functional genes as a suitable approach for evaluation of the bioremediation potential of petroleum-contaminated sites: a mini-review
Q88035668Bacterial community changes in response to oil contamination and perennial crop cultivation
Q47931890Chemical dispersants enhance the activity of oil- and gas condensate-degrading marine bacteria.
Q100954873Complete genome sequence and comparative genome analysis of Alcanivorax sp. IO_7, a marine alkane-degrading bacterium isolated from hydrothermally-influenced deep seawater of southwest Indian ridge
Q36268466Contribution of cyanobacterial alkane production to the ocean hydrocarbon cycle
Q47778082Crystal Structure of TetR Family Repressor AlkX from Dietzia sp. Strain DQ12-45-1b Implicated in Biodegradation of n-Alkanes
Q90454410Current Status of the Degradation of Aliphatic and Aromatic Petroleum Hydrocarbons by Thermophilic Microbes and Future Perspectives
Q41523272Development of tailored indigenous marine consortia for the degradation of naturally weathered polyethylene films
Q92875436Differential protein expression during growth on linear versus branched alkanes in the obligate marine hydrocarbon-degrading bacterium Alcanivorax borkumensis SK2T
Q35835214Diverse Bacterial Groups Contribute to the Alkane Degradation Potential of Chronically Polluted Subantarctic Coastal Sediments
Q36073470Diversity of alkane hydroxylase genes on the rhizoplane of grasses planted in petroleum-contaminated soils
Q39188120Diversity of crude oil-degrading bacteria and alkane hydroxylase (alkB) genes from the Qinghai-Tibet Plateau
Q36548170Draft Genome Sequence of Altererythrobacter marensis DSM 21428T, Isolated from Seawater
Q33875143Draft genome analysis of Dietzia sp. 111N12-1, isolated from the South China Sea with bioremediation activity
Q51739047Evaluation of conventional and response surface level optimisation of n-dodecane (n-C12) mineralisation by psychrotolerant strains isolated from pristine soil at Southern Victoria Island, Antarctica.
Q47143170Evolutionary responses to crude oil from the Deepwater Horizon oil spill by the copepod Eurytemora affinis
Q90375691Food Chemicals Disrupt Human Gut Microbiota Activity And Impact Intestinal Homeostasis As Revealed By In Vitro Systems
Q55416147Functional Genetic Diversity and Culturability of Petroleum-Degrading Bacteria Isolated From Oil-Contaminated Soils.
Q41515431Hydrocarbon degradation potential and plant growth-promoting activity of culturable endophytic bacteria of Lotus corniculatus and Oenothera biennis from a long-term polluted site.
Q53193741Identification and characterisation of isoprene-degrading bacteria in an estuarine environment.
Q28588528Identification of Electrode Respiring, Hydrocarbonoclastic Bacterial Strain Stenotrophomonas maltophilia MK2 Highlights the Untapped Potential for Environmental Bioremediation
Q35924501Impacts of ruminal microorganisms on the production of fuels: how can we intercede from the outside?
Q92000998Integrated Comparative Genomic Analysis and Phenotypic Profiling of Pseudomonas aeruginosa Isolates From Crude Oil
Q43032927Isolation and complete genome sequence of Halorientalis hydrocarbonoclasticus sp. nov., a hydrocarbon-degrading haloarchaeon
Q40566051Metabolic responses of Rhodococcus erythropolis PR4 grown on diesel oil and various hydrocarbons
Q38681666Metagenomic Analysis of Subtidal Sediments from Polar and Subpolar Coastal Environments Highlights the Relevance of Anaerobic Hydrocarbon Degradation Processes.
Q99238204Metagenomic Profiling and Microbial Metabolic Potential of Perdido Fold Belt (NW) and Campeche Knolls (SE) in the Gulf of Mexico
Q35955570Metagenomic and functional analyses of the consequences of reduction of bacterial diversity on soil functions and bioremediation in diesel-contaminated microcosms
Q98771651Microbial Culture in Minimal Medium With Oil Favors Enrichment of Biosurfactant Producing Genes
Q52683032Novel insights into freshwater hydrocarbon-rich sediments using metatranscriptomics: Opening the black box.
Q50970728Phylogenomic analysis of integral diiron membrane histidine motif-containing enzymes in ciliates provides insights into their function and evolutionary relationships.
Q47359150Production of 1-dodecanol, 1-tetradecanol, and 1,12-dodecanediol by whole-cell biotransformation in Escherichia coli.
Q47960520Production of rhamnolipids and diesel oil degradation by bacteria isolated from soil contaminated by petroleum
Q30377329Prospecting Biotechnologically-Relevant Monooxygenases from Cold Sediment Metagenomes: An In Silico Approach
Q51703155Regulation of alkane degradation pathway by a TetR family repressor via an autoregulation positive feedback mechanism in a Gram-positive Dietzia bacterium.
Q36457733Regulation of the Alkane Hydroxylase CYP153 Gene in a Gram-Positive Alkane-Degrading Bacterium, Dietzia sp. Strain DQ12-45-1b
Q35687693Salix purpurea Stimulates the Expression of Specific Bacterial Xenobiotic Degradation Genes in a Soil Contaminated with Hydrocarbons
Q37168471Species Divergence vs. Functional Convergence Characterizes Crude Oil Microbial Community Assembly
Q55426953Survival and Energy Producing Strategies of Alkane Degraders Under Extreme Conditions and Their Biotechnological Potential.
Q35600525The effect of oil spills on the bacterial diversity and catabolic function in coastal sediments: a case study on the Prestige oil spill.

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