| Q34999150 | 454 pyrosequencing to describe microbial eukaryotic community composition, diversity and relative abundance: a test for marine haptophytes |
| Q57920958 | A molecular survey of protist diversity through the central Arctic Ocean |
| Q41855931 | A morphogenetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage-specific barcode markers in microbial ecology. |
| Q34077935 | Arctic Ocean microbial community structure before and after the 2007 record sea ice minimum |
| Q31059620 | Assembling the challenging puzzle of algal biodiversity: species delimitation within the genus Asterochloris (Trebouxiophyceae, Chlorophyta). |
| Q34418800 | Bacteria and diatom co-occurrence patterns in microbial mats from polar desert streams |
| Q35928718 | Biogeography and Photosynthetic Biomass of Arctic Marine Pico-Eukaroytes during Summer of the Record Sea Ice Minimum 2012. |
| Q35654485 | Bioinformatic Amplicon Read Processing Strategies Strongly Affect Eukaryotic Diversity and the Taxonomic Composition of Communities |
| Q21145731 | CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms |
| Q35091450 | Characterization of the 18S rRNA gene for designing universal eukaryote specific primers. |
| Q35163846 | Ciliates and the rare biosphere: a review |
| Q57230923 | Combining ecophysiological and microbial ecological approaches to study the relationship between Medicago truncatula genotypes and their associated rhizosphere bacterial communities |
| Q35756248 | Comparative study of the validity of three regions of the 18S-rRNA gene for massively parallel sequencing-based monitoring of the planktonic eukaryote community |
| Q35329346 | Comparing High-throughput Platforms for Sequencing the V4 Region of SSU-rDNA in Environmental Microbial Eukaryotic Diversity Surveys |
| Q46293045 | Comparison of coastal phytoplankton composition estimated from the V4 and V9 regions of the 18S rRNA gene with a focus on photosynthetic groups and especially Chlorophyta |
| Q41947571 | Contrasting denitrifier communities relate to contrasting N2O emission patterns from acidic peat soils in arctic tundra. |
| Q36007897 | DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses. |
| Q59281243 | DNA metabarcoding of orchid-derived products reveals widespread illegal orchid trade |
| Q35486713 | Deep sequencing uncovers protistan plankton diversity in the Portuguese Ria Formosa solar saltern ponds |
| Q35132197 | Deep-branching novel lineages and high diversity of haptophytes in the Skagerrak (Norway) uncovered by 454 pyrosequencing |
| Q35644685 | Determining Microeukaryotic Plankton Community around Xiamen Island, Southeast China, Using Illumina MiSeq and PCR-DGGE Techniques |
| Q34395541 | Determining the diet of larvae of western rock lobster (Panulirus cygnus) using high-throughput DNA sequencing techniques |
| Q36367802 | Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity |
| Q35664770 | Divergence thresholds and divergent biodiversity estimates: can metabarcoding reliably describe zooplankton communities? |
| Q64122717 | Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems |
| Q55310377 | Diversity and potential activity patterns of planktonic eukaryotic microbes in a mesoeutrophic coastal area (eastern English Channel). |
| Q39345823 | Diversity and temporal patterns of planktonic protist assemblages at a Mediterranean Long Term Ecological Research site. |
| Q42677066 | Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay. |
| Q35180091 | Effects of long-term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach |
| Q46610711 | Environmental drivers of microbial community shifts in the giant barrel sponge, Xestospongia muta, over a shallow to mesophotic depth gradient |
| Q35861643 | Estimating population diversity with CatchAll. |
| Q28679253 | Evidence for isolated evolution of deep-sea ciliate communities through geological separation and environmental selection |
| Q88037859 | Evolution of helix formation in the ribosomal Internal Transcribed Spacer 2 (ITS2) and its significance for RNA secondary structures |
| Q44544013 | Fluorescent epibiotic microbial community on the carapace of a Bahamian ostracod |
| Q35235840 | From barcoding single individuals to metabarcoding biological communities: towards an integrative approach to the study of global biodiversity. |
| Q47414061 | GPR-Analyzer: a simple tool for quantitative analysis of hierarchical multispecies microarrays. |
| Q34600189 | General patterns of diversity in major marine microeukaryote lineages |
| Q56501801 | High sensitivity of 454 pyrosequencing for detection of rare species in aquatic communities |
| Q46287847 | Impact of sequence processing and taxonomic classification approaches on eukaryotic community structure from environmental samples with emphasis on diatoms. |
| Q33830025 | Inter-annual variability of transparent exopolymer particles in the Arctic Ocean reveals high sensitivity to ecosystem changes |
| Q33798727 | Investigating microbial eukaryotic diversity from a global census: insights from a comparison of pyrotag and full-length sequences of 18S rRNA genes |
| Q34074571 | JAGUC--a software package for environmental diversity analyses. |
| Q41915447 | Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce |
| Q46548719 | Limited sinking of Phaeocystis during a 12 days sediment trap study |
| Q28829509 | Local diversity of heathland Cercozoa explored by in-depth sequencing |
| Q64456633 | Metabarcoding Insights Into the Trophic Behavior and Identity of Intertidal Benthic Foraminifera |
| Q39357553 | Metabarcoding and metabolome analyses of copepod grazing reveal feeding preference and linkage to metabolite classes in dynamic microbial plankton communities |
| Q64241848 | Metabarcoding free-living marine nematodes using curated 18S and CO1 reference sequence databases for species-level taxonomic assignments |
| Q35289939 | Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies. |
| Q35767156 | Microbial life in Bourlyashchy, the hottest thermal pool of Uzon Caldera, Kamchatka. |
| Q34335563 | Microplanktonic community structure in a coastal system relative to a Phaeocystis bloom inferred from morphological and tag pyrosequencing methods |
| Q30392334 | Molecular biomass and MetaTaxogenomic assessment of soil microbial communities as influenced by soil DNA extraction procedure |
| Q91983820 | Network analysis reveals succession of Microcystis genotypes accompanying distinctive microbial modules with recurrent patterns |
| Q34670345 | Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms. |
| Q35628265 | Not all are free-living: high-throughput DNA metabarcoding reveals a diverse community of protists parasitizing soil metazoa. |
| Q60047564 | Novel Widespread Marine Oomycetes Parasitising Diatoms, Including the Toxic Genus : Genetic, Morphological, and Ecological Characterisation |
| Q37117494 | Novel chytrid lineages dominate fungal sequences in diverse marine and freshwater habitats |
| Q28647056 | Open science resources for the discovery and analysis of Tara Oceans data |
| Q58133964 | Patchy-distributed ciliate (Protozoa) diversity of eight polar communities as determined by 454 amplicon pyrosequencing |
| Q34630217 | Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: new insights into the freshwater protist diversity |
| Q35201349 | Picoeukaryote plankton composition off West Spitsbergen at the entrance to the Arctic Ocean. |
| Q45734771 | Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context |
| Q57451199 | Planktonic eukaryote molecular diversity: discrimination of minerotrophic and ombrotrophic peatland pools in Tierra del Fuego (Argentina) |
| Q33963373 | Potential of pmoA amplicon pyrosequencing for methanotroph diversity studies |
| Q57920955 | Protist community composition in the Pacific sector of the Southern Ocean during austral summer 2010 |
| Q29014451 | Protists in Arctic drift and land-fast sea ice |
| Q37323884 | Quantitative analysis of dinoflagellates and diatoms community via Miseq sequencing of actin gene and v9 region of 18S rDNA. |
| Q57947770 | Regional variability in eukaryotic protist communities in the Amundsen Sea |
| Q34764499 | Seasonality and disturbance: annual pattern and response of the bacterial and microbial eukaryotic assemblages in a freshwater ecosystem |
| Q28730952 | Sequencing our way towards understanding global eukaryotic biodiversity |
| Q35155892 | Single cell genome analysis of an uncultured heterotrophic stramenopile. |
| Q46500545 | Spatial Distribution of Eukaryotic Communities Using High-Throughput Sequencing Along a Pollution Gradient in the Arsenic-Rich Creek Sediments of Carnoulès Mine, France |
| Q28818636 | Stable and Variable Parts of Microbial Community in Siberian Deep Subsurface Thermal Aquifer System Revealed in a Long-Term Monitoring Study |
| Q34526847 | Stable composition of the nano- and picoplankton community during the ocean iron fertilization experiment LOHAFEX. |
| Q57079821 | Stimulation of Different Functional Groups of Bacteria by Various Plant Residues as a Driver of Soil Priming Effect |
| Q31151885 | Strengths and Biases of High-Throughput Sequencing Data in the Characterization of Freshwater Ciliate Microbiomes. |
| Q40162665 | Swarm v2: highly-scalable and high-resolution amplicon clustering |
| Q28660613 | Symbiotic prokaryotic communities from different populations of the giant barrel sponge, Xestospongia muta |
| Q35575410 | Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms |
| Q36491346 | The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy |
| Q36289904 | The best of both worlds: A combined approach for analyzing microalgal diversity via metabarcoding and morphology-based methods |
| Q35664774 | Toward accurate molecular identification of species in complex environmental samples: testing the performance of sequence filtering and clustering methods |
| Q57816768 | Unicellular Eukaryotic Community Response to Temperature and Salinity Variation in Mesocosm Experiments |
| Q34397076 | Vertical distribution of microbial communities in a perennially stratified Arctic lake with saline, anoxic bottom waters |
| Q46988573 | Winter-summer succession of unicellular eukaryotes in a meso-eutrophic coastal system. |