Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers

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Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers is …
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scholarly articleQ13442814

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P819ADS bibcode2011PLoSO...617595Y
P356DOI10.1371/JOURNAL.PONE.0017595
P932PMC publication ID3048400
P698PubMed publication ID21390234
P5875ResearchGate publication ID50352216

P50authorXianghua LiQ88015740
Qifa ZhangQ89801220
Caiguo XuQ113208728
Weibo XieQ48037798
P2093author name stringJia Wang
Jinghua Xiao
Huihui Yu
Yongzhong Xing
P2860cites workQTLs for low nitrogen tolerance at seedling stage identified using a recombinant inbred line population derived from an elite rice hybridQ81273551
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Single-feature polymorphism discovery in the barley transcriptomeQ24812525
The impact of next-generation sequencing technology on geneticsQ28268088
R/qtl: QTL mapping in experimental crossesQ29616825
High throughput T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics.Q31095080
Non-random distribution of T-DNA insertions at various levels of the genome hierarchy as revealed by analyzing 13 804 T-DNA flanking sequences from an enhancer-trap mutant libraryQ33270367
Single feature polymorphism discovery in riceQ33279390
Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing.Q33934926
Precision mapping of quantitative trait lociQ33962819
Linking differential domain functions of the GS3 protein to natural variation of grain size in riceQ34320667
Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred linesQ34491797
Allelic diversification at the C (OsC1) locus of wild and cultivated rice: nucleotide changes associated with phenotypesQ34569876
Genetic dissection of an elite rice hybrid revealed that heterozygotes are not always advantageous for performance.Q34616567
Next-generation sequencing transforms today's biologyQ34731728
Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybridQ34807319
Construction of a 10,000-marker ultradense genetic recombination map of potato: providing a framework for accelerated gene isolation and a genomewide physical map.Q34895598
The TIGR Rice Genome Annotation Resource: improvements and new featuresQ35545826
Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in ArabidopsisQ35730032
Array-based high-throughput DNA markers for crop improvementQ37156447
High-throughput genotyping by whole-genome resequencing.Q37222784
Next-generation sequencing technologies and their implications for crop genetics and breedingQ37579399
Genetic and molecular bases of rice yieldQ37700595
A global analysis of QTLs for expression variations in rice shoots at the early seedling stageQ38505778
Single feature polymorphisms between two rice cultivars detected using a median polish methodQ39987084
Large-scale identification of single-feature polymorphisms in complex genomesQ40949524
Quantitative trait locus mapping based on resampling in a vast maize testcross experiment and its relevance to quantitative genetics for complex traitsQ41966909
GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane proteinQ42679495
Rice expression atlas in reproductive developmentQ44536218
Deletion in a gene associated with grain size increased yields during rice domesticationQ44776538
Mutant resources in rice for functional genomics of the grassesQ44944242
Genome-wide association studies of 14 agronomic traits in rice landraces.Q45908136
Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weightQ47206865
Effect of population size on the estimation of QTL: a test using resistance to barley stripe rustQ47367936
A dynamic gene expression atlas covering the entire life cycle of rice.Q51920590
T-DNA insertional mutagenesis for functional genomics in rice.Q54045204
Direct allelic variation scanning of the yeast genome.Q54127504
Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice.Q54534353
Gene expression quantitative trait locus analysis of 16â 000 barley genes reveals a complex pattern of genome-wide transcriptional regulationQ58052946
Development of enhancer trap lines for functional analysis of the rice genomeQ73725840
Characterization of the main effects, epistatic effects and their environmental interactions of QTLs on the genetic basis of yield traits in riceQ78970598
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue3
P407language of work or nameEnglishQ1860
P304page(s)e17595
P577publication date2011-03-03
P1433published inPLOS OneQ564954
P1476titleGains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers
P478volume6

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