| scholarly article | Q13442814 |
| P50 | author | Steven Salzberg | Q7248791 |
| P2093 | author name string | O White | |
| M D Ermolaeva | |||
| P2860 | cites work | A probabilistic learning approach to whole-genome operon prediction. | Q45967324 |
| Yeast "operons". | Q47715859 | ||
| Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes. | Q53932049 | ||
| Exploitation of gene context | Q55136027 | ||
| A historical perspective on gene/protein functional assignment | Q73795623 | ||
| Conserved gene clusters in bacterial genomes provide further support for the primacy of RNA | Q73816106 | ||
| Operons in Escherichia coli: genomic analyses and predictions | Q22066322 | ||
| Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS | Q22122392 | ||
| Lateral gene transfer and the nature of bacterial innovation | Q22122396 | ||
| Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
| Transcription attenuation: once viewed as a novel regulatory strategy | Q24549083 | ||
| The use of gene clusters to infer functional coupling | Q24673189 | ||
| Basic local alignment search tool | Q25938991 | ||
| The complete genome sequence of Escherichia coli K-12 | Q27860542 | ||
| Selfish operons: the evolutionary impact of gene clustering in prokaryotes and eukaryotes | Q28140965 | ||
| Linkage map of Escherichia coli K-12, edition 10: the traditional map | Q34010050 | ||
| Selfish operons and speciation by gene transfer | Q34438888 | ||
| The existence of two genes between infB and rpsO in the Escherichia coli genome: DNA sequencing and S1 nuclease mapping | Q36075178 | ||
| An automated comparative analysis of 17 complete microbial genomes | Q38465443 | ||
| RegulonDB: a database on transcriptional regulation in Escherichia coli | Q39722191 | ||
| The dnaK operon of Bacillus subtilis is heptacistronic | Q39844497 | ||
| Modeling and predicting transcriptional units of Escherichia coli genes using hidden Markov models | Q40771103 | ||
| In vivo evidence that the nusA and infB genes of E. coli are part of the same multi-gene operon which encodes at least four proteins. | Q41382876 | ||
| The mutL repair gene of Escherichia coli K-12 forms a superoperon with a gene encoding a new cell-wall amidase | Q42673927 | ||
| P433 | issue | 5 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 1216-1221 | |
| P577 | publication date | 2001-03-01 | |
| P1433 | published in | Nucleic Acids Research | Q135122 |
| P1476 | title | Prediction of operons in microbial genomes | |
| P478 | volume | 29 |
| Q47177146 | A global analysis of adaptive evolution of operons in cyanobacteria |
| Q24791071 | A novel method for accurate operon predictions in all sequenced prokaryotes |
| Q45195825 | A novel thermostable membrane protease forming an operon with a stomatin homolog from the hyperthermophilic archaebacterium Pyrococcus horikoshii. |
| Q47716328 | A phylogenetic analysis of the pSymB replicon from the Sinorhizobium meliloti genome reveals a complex evolutionary history |
| Q35990883 | A predicted operon map for Mycobacterium tuberculosis |
| Q51851443 | A universal operon predictor for prokaryotic genomes. |
| Q24810297 | A universally applicable method of operon map prediction on minimally annotated genomes using conserved genomic context |
| Q35376567 | Automatic prediction of polysaccharide utilization loci in Bacteroidetes species |
| Q33959470 | Binary particle swarm optimization for operon prediction |
| Q33440046 | Brucella melitensis global gene expression study provides novel information on growth phase-specific gene regulation with potential insights for understanding Brucella:host initial interactions |
| Q33920455 | Burkholderia mallei cellular interactions in a respiratory cell model. |
| Q33557890 | Characterization of novel beta-galactosidase activity that contributes to glycoprotein degradation and virulence in Streptococcus pneumoniae |
| Q33273709 | Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli |
| Q29346584 | Characterization of the CopR regulon of Lactococcus lactis IL1403. |
| Q39688069 | Cloning, purification and preliminary crystallographic analysis of a putative DNA-binding membrane protein, YmfM, from Staphylococcus aureus. |
| Q39615044 | Co-expression pattern from DNA microarray experiments as a tool for operon prediction |
| Q24650630 | Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes |
| Q39860961 | Computational identification of operons in microbial genomes |
| Q38961991 | Computational operon prediction in whole-genomes and metagenomes |
| Q31113360 | Congruent evolution of different classes of non-coding DNA in prokaryotic genomes |
| Q31051729 | Connected gene neighborhoods in prokaryotic genomes |
| Q40249672 | Conservation of adjacency as evidence of paralogous operons |
| Q47615461 | Conservation of gene co-regulation in prokaryotes and eukaryotes |
| Q36022309 | Conserved Units of Co-Expression in Bacterial Genomes: An Evolutionary Insight into Transcriptional Regulation |
| Q50620086 | Construction of a chloroplast protein interaction network and functional mining of photosynthetic proteins in Arabidopsis thaliana. |
| Q39895557 | Construction of a reporter system to study Burkholderia mallei type III secretion and identification of the BopA effector protein function in intracellular survival. |
| Q27650417 | Crystal structure of Tflp: a ferredoxin-like metallo-beta-lactamase superfamily protein from Thermoanaerobacter tengcongensis |
| Q94102815 | Current Awareness on Comparative and Functional Genomics |
| Q37202634 | DOOR: a database for prokaryotic operons |
| Q29029166 | Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners |
| Q88764285 | Effector Gene xopAE of Xanthomonas euvesicatoria 85-10 Is Part of an Operon and Encodes an E3 Ubiquitin Ligase |
| Q35193854 | Elucidation of operon structures across closely related bacterial genomes |
| Q40539684 | Environmental conditions and transcriptional regulation in Escherichia coli: a physiological integrative approach. |
| Q42705155 | Evidence that the essential response regulator YycF in Streptococcus pneumoniae modulates expression of fatty acid biosynthesis genes and alters membrane composition |
| Q24800105 | Evolution of gene order conservation in prokaryotes |
| Q36484284 | Evolutionary dynamics of nematode operons: easy come, slow go. |
| Q62111635 | Expression of an entire bacterial operon in plants |
| Q49423852 | Factor-dependent archaeal transcription termination |
| Q39678795 | Functional and mutational analysis of conjugative transfer region 1 (Tra1) from the IncHI1 plasmid R27. |
| Q42013359 | Functional-genomics-based identification and characterization of open reading frames encoding alpha-glucoside-processing enzymes in the hyperthermophilic archaeon Pyrococcus furiosus. |
| Q85246400 | GC‐rich intra‐operonic spacers in prokaryotes: Possible relation to gene order conservation |
| Q39785189 | GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways. |
| Q42363826 | Gene Expression Analysis of Zobellia galactanivorans during the Degradation of Algal Polysaccharides Reveals both Substrate-Specific and Shared Transcriptome-Wide Responses |
| Q52895002 | Gene selection and cloning approaches for co-expression and production of recombinant protein-protein complexes. |
| Q51380261 | Genome wide identification of DNA binding motifs of NodD-factor in Sinorhizobium meliloti and Mesorhizobium loti. |
| Q24806496 | Genome wide identification of regulatory motifs in Bacillus subtilis |
| Q28593393 | Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi |
| Q33721498 | Genome-wide inference of regulatory networks in Streptomyces coelicolor |
| Q41337769 | Genome-wide operon prediction in Staphylococcus aureus |
| Q35780803 | Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor |
| Q37529405 | Genomic evolution of 11 type strains within family Planctomycetaceae |
| Q33959493 | High accuracy operon prediction method based on STRING database scores. |
| Q24815653 | HinT proteins and their putative interaction partners in Mollicutes and Chlamydiaceae |
| Q28486406 | Identification of Rv3230c as the NADPH oxidoreductase of a two-protein DesA3 acyl-CoA desaturase in Mycobacterium tuberculosis H37Rv |
| Q34233295 | Identification of the syr-syp box in the promoter regions of genes dedicated to syringomycin and syringopeptin production by Pseudomonas syringae pv. syringae B301D |
| Q28473568 | Identifying cognate binding pairs among a large set of paralogs: the case of PE/PPE proteins of Mycobacterium tuberculosis |
| Q51629703 | Improved Algorithms for Finding Gene Teams and Constructing Gene Team Trees |
| Q36856676 | Indirect and suboptimal control of gene expression is widespread in bacteria |
| Q24797198 | Inference of protein function and protein linkages in Mycobacterium tuberculosis based on prokaryotic genome organization: a combined computational approach |
| Q57935199 | Inferring Functional Relationships from Conservation of Gene Order |
| Q31104442 | Inferring genome-wide functional linkages in E. coli by combining improved genome context methods: comparison with high-throughput experimental data |
| Q24810299 | Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication |
| Q37052235 | Investigating Evolutionary Dynamics of RHA1 Operons. |
| Q24814855 | Mathematical design of prokaryotic clone-based microarrays |
| Q47920616 | Microarray analysis and redox control of gene expression in the cyanobacterium Synechocystis sp. PCC 6803. |
| Q24804241 | Microarray analysis of orthologous genes: conservation of the translational machinery across species at the sequence and expression level |
| Q35187767 | Model systems in drug discovery: chemical genetics meets genomics |
| Q33290226 | Novel algorithms reveal streptococcal transcriptomes and clues about undefined genes |
| Q33387158 | Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009. |
| Q25257797 | ODB: a database of operons accumulating known operons across multiple genomes |
| Q25257524 | OpWise: operons aid the identification of differentially expressed genes in bacterial microarray experiments |
| Q28608477 | OperomeDB: A Database of Condition-Specific Transcription Units in Prokaryotic Genomes |
| Q92314731 | Operon Concatenation Is an Ancient Feature That Restricts the Potential to Rearrange Bacterial Chromosomes |
| Q42050891 | Operon formation is driven by co-regulation and not by horizontal gene transfer |
| Q30477624 | Operon information improves gene expression estimation for cDNA microarrays |
| Q33833493 | Operon prediction by comparative genomics: an application to the Synechococcus sp. WH8102 genome |
| Q42940094 | Operon prediction for sequenced bacterial genomes without experimental information |
| Q35567971 | Operon prediction in Pyrococcus furiosus |
| Q35646651 | Operon prediction using both genome-specific and general genomic information |
| Q33379043 | OperonDB: a comprehensive database of predicted operons in microbial genomes |
| Q37418706 | Operons |
| Q33474544 | PairWise Neighbours database: overlaps and spacers among prokaryote genomes. |
| Q24815778 | Phydbac "Gene Function Predictor": a gene annotation tool based on genomic context analysis |
| Q24816387 | Phylogenetic detection of conserved gene clusters in microbial genomes |
| Q41010515 | PredictRegulon: a web server for the prediction of the regulatory protein binding sites and operons in prokaryote genomes. |
| Q38654083 | Predicting Functional Interactions Among Genes in Prokaryotes by Genomic Context. |
| Q33371800 | Predicting protein linkages in bacteria: which method is best depends on task |
| Q24795601 | Prediction of co-regulated genes in Bacillus subtilis on the basis of upstream elements conserved across three closely related species |
| Q24801555 | Prolinks: a database of protein functional linkages derived from coevolution |
| Q33968979 | PromBase: a web resource for various genomic features and predicted promoters in prokaryotic genomes |
| Q37117378 | Protein serine/threonine kinase StkP positively controls virulence and competence in Streptococcus pneumoniae. |
| Q38698565 | Proteogenomics of rare taxonomic phyla: A prospective treasure trove of protein coding genes |
| Q47910928 | ProteomeWeb: A web‐based interface for the display and interrogation of proteomes |
| Q33892913 | Proteomics-based identification of differentially abundant proteins reveals adaptation mechanisms of Xanthomonas citri subsp. citri during Citrus sinensis infection |
| Q37451231 | Pyruvate formate lyase is required for pneumococcal fermentative metabolism and virulence. |
| Q37140286 | Quantitative proteomics of intracellular Porphyromonas gingivalis |
| Q31116999 | REMap: Operon map of M. tuberculosis based on RNA sequence data |
| Q37023784 | Random mutagenesis identifies novel genes involved in the secretion of antimicrobial, cell wall-lytic enzymes by Lactococcus lactis |
| Q43239451 | Reannotation of translational start sites in the genome of Mycobacterium tuberculosis |
| Q31068991 | Reconstruction of the Regulatory Network for Bacillus subtilis and Reconciliation with Gene Expression Data |
| Q37156996 | Regulation of igaA and the Rcs system by the MviA response regulator in Salmonella enterica. |
| Q41014596 | Regulog analysis: detection of conserved regulatory networks across bacteria: application to Staphylococcus aureus |
| Q40403678 | RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12 |
| Q36183872 | RodZ and PgsA Play Intertwined Roles in Membrane Homeostasis of Bacillus subtilis and Resistance to Weak Organic Acid Stress |
| Q33768199 | Role of GlnR in acid-mediated repression of genes encoding proteins involved in glutamine and glutamate metabolism in Streptococcus mutans. |
| Q28486385 | Rv1106c from Mycobacterium tuberculosis is a 3beta-hydroxysteroid dehydrogenase |
| Q35069715 | Statistical bioinformatic methods in microbial genome analysis |
| Q61814300 | Structural and Phylogenetic Diversity of Anaerobic Carbon-Monoxide Dehydrogenases |
| Q34662819 | Structure and function of archaeal RNA polymerases. |
| Q46253521 | Sugar Lego: gene composition of bacterial carbohydrate metabolism genomic loci |
| Q90038371 | The SNAP hypothesis: Chromosomal rearrangements could emerge from positive Selection during Niche Adaptation |
| Q35846941 | The TB Structural Genomics Consortium: a decade of progress |
| Q30374533 | The Thermotoga maritima Trk potassium transporter--from frameshift to function |
| Q25256865 | The UCSC Archaeal Genome Browser |
| Q42047417 | The distinctive signatures of promoter regions and operon junctions across prokaryotes |
| Q33289235 | The entire organization of transcription units on the Bacillus subtilis genome |
| Q42286183 | The evolutionary dynamics of functional modules and the extraordinary plasticity of regulons: the Escherichia coli perspective |
| Q33247453 | The life-cycle of operons |
| Q26801105 | The power of operon rearrangements for predicting functional associations |
| Q37141657 | The relative value of operon predictions. |
| Q27651462 | The solution structure of the C-terminal domain of NfeD reveals a novel membrane-anchored OB-fold |
| Q36282643 | Towards quantitative biology: integration of biological information to elucidate disease pathways and to guide drug discovery |
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| Q37521035 | Transcriptional organization of the Clostridium acetobutylicum genome. |
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| Q29346670 | Transcriptomic and proteomic characterization of the Fur modulon in the metal-reducing bacterium Shewanella oneidensis |
| Q100946079 | Uncovering a superfamily of nickel-dependent hydroxyacid racemases and epimerases |
| Q37354168 | Uncovering the functional constraints underlying the genomic organization of the odorant-binding protein genes. |
| Q39080836 | Xenolog classification |
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