| scholarly article | Q13442814 |
| P50 | author | Adam Arkin | Q37371935 |
| Eric J. Alm | Q88440801 | ||
| P2093 | author name string | Katherine H Huang | |
| Morgan N Price | |||
| P2860 | cites work | A motif co-occurrence approach for genome-wide prediction of transcription-factor-binding sites in Escherichia coli | Q38345092 |
| Co-expression pattern from DNA microarray experiments as a tool for operon prediction | Q39615044 | ||
| DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics | Q40403367 | ||
| Predicting protein function by genomic context: quantitative evaluation and qualitative inferences | Q40414366 | ||
| Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli | Q40901286 | ||
| Distributional profiles of homologous open reading frames among bacterial phyla: implications for vertical and lateral transmission | Q45315110 | ||
| Valyl-tRNA synthetase gene of Escherichia coli K12. Molecular genetic characterization | Q46475472 | ||
| Efficient attenuation of stochasticity in gene expression through post-transcriptional control. | Q52561212 | ||
| Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes. | Q53932049 | ||
| Analysis of the Cellular Functions of Escherichia coli Operons and Their Conservation in Bacillus subtilis | Q57838805 | ||
| Characterization and properties of very large inversions of the E. coli chromosome along the origin-to-terminus axis | Q69926359 | ||
| Genome size and operon content | Q73139060 | ||
| Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655 | Q22065459 | ||
| Operons in Escherichia coli: genomic analyses and predictions | Q22066322 | ||
| CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice | Q24286950 | ||
| Selfish operons: horizontal transfer may drive the evolution of gene clusters | Q24533213 | ||
| The EcoCyc Database | Q24548415 | ||
| The COG database: new developments in phylogenetic classification of proteins from complete genomes | Q24605347 | ||
| The use of gene clusters to infer functional coupling | Q24673189 | ||
| Molecular archaeology of the Escherichia coli genome | Q24681270 | ||
| A novel method for accurate operon predictions in all sequenced prokaryotes | Q24791071 | ||
| Prediction of co-regulated genes in Bacillus subtilis on the basis of upstream elements conserved across three closely related species | Q24795601 | ||
| From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria | Q24795892 | ||
| Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ | Q24797089 | ||
| TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing | Q27860512 | ||
| Selfish operons: the evolutionary impact of gene clustering in prokaryotes and eukaryotes | Q28140965 | ||
| Likelihood-based tests of topologies in phylogenetics | Q28214588 | ||
| A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome | Q28288655 | ||
| Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements | Q29614394 | ||
| Interaction network containing conserved and essential protein complexes in Escherichia coli | Q29615776 | ||
| Conservation of gene order: a fingerprint of proteins that physically interact | Q29616049 | ||
| CDD: a curated Entrez database of conserved domain alignments | Q29618556 | ||
| Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs | Q30002374 | ||
| The Stanford Microarray Database: data access and quality assessment tools | Q30760675 | ||
| Genome-Scale Analysis of the Uses of the Escherichia coli Genome: Model-Driven Analysis of Heterogeneous Data Sets | Q30882392 | ||
| Connected gene neighborhoods in prokaryotic genomes | Q31051729 | ||
| Prediction of operons in microbial genomes | Q33935676 | ||
| Selection and endpoint distribution of bacterial inversion mutations | Q33949633 | ||
| Evidence against the selfish operon theory | Q34547963 | ||
| Factors influencing the identification of transcription factor binding sites by cross-species comparison. | Q35805952 | ||
| Chromosomal organization is shaped by the transcription regulatory network | Q36056176 | ||
| Genomic evolution during a 10,000-generation experiment with bacteria | Q36451882 | ||
| P433 | issue | 6 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | horizontal gene transfer | Q83185 |
| P1104 | number of pages | 11 | |
| P304 | page(s) | 809-819 | |
| P577 | publication date | 2005-06-01 | |
| P1433 | published in | Genome Research | Q5533485 |
| P1476 | title | Operon formation is driven by co-regulation and not by horizontal gene transfer | |
| P478 | volume | 15 |
| Q34525387 | (Meta)genomic insights into the pathogenome of Cellulosimicrobium cellulans |
| Q47177146 | A global analysis of adaptive evolution of operons in cyanobacteria |
| Q24548560 | A metabolic network in the evolutionary context: multiscale structure and modularity |
| Q42552656 | A predictive biophysical model of translational coupling to coordinate and control protein expression in bacterial operons |
| Q40512364 | A quantitative study of the benefits of co-regulation using the spoIIA operon as an example |
| Q21089931 | A test of the coordinated expression hypothesis for the origin and maintenance of the GAL cluster in yeast |
| Q35785434 | An event-driven approach for studying gene block evolution in bacteria |
| Q38312640 | Analysis of gene expression in operons of Streptomyces coelicolor |
| Q35894739 | Antisense transcription as a tool to tune gene expression |
| Q28657639 | Bacterial genome instability |
| Q38675125 | Biosynthesis of polyketides by trans-AT polyketide synthases |
| Q38686543 | Coevolution of the Organization and Structure of Prokaryotic Genomes. |
| Q35546633 | Comparative genomic and phylogenetic analyses of Gammaproteobacterial glg genes traced the origin of the Escherichia coli glycogen glgBXCAP operon to the last common ancestor of the sister orders Enterobacteriales and Pasteurellales. |
| Q41616522 | Comparative genomics and phylogenomic analyses of lysine riboswitch distributions in bacteria. |
| Q30978067 | Conditions for the evolution of gene clusters in bacterial genomes |
| Q36022309 | Conserved Units of Co-Expression in Bacterial Genomes: An Evolutionary Insight into Transcriptional Regulation |
| Q92025938 | Control of nitrogen fixation in bacteria that associate with cereals |
| Q21131620 | Crossing the line: selection and evolution of virulence traits |
| Q33502363 | Evolutionary constraints permeate large metabolic networks |
| Q35060411 | Evolutionary dynamics of overlapped genes in Salmonella |
| Q41244286 | Footprints of optimal protein assembly strategies in the operonic structure of prokaryotes. |
| Q37858621 | From hormones to secondary metabolism: the emergence of metabolic gene clusters in plants |
| Q37293854 | Functional Annotations of Paralogs: A Blessing and a Curse |
| Q89664754 | Functional characterization of an inducible bidirectional promoter from Fusarium oxysporum f. sp. cubense |
| Q35445581 | Functional optimization of gene clusters by combinatorial design and assembly |
| Q34423779 | G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes |
| Q57809038 | Gene Gangs of the Chloroviruses: Conserved Clusters of Collinear Monocistronic Genes |
| Q36321642 | Gene location and DNA density determine transcription factor distributions in Escherichia coli |
| Q36483447 | Genome streamlining and chemical defense in a coral reef symbiosis. |
| Q46922914 | Genome-wide identification, domain architectures and phylogenetic analysis provide new insights into the early evolution of shikimate pathway in prokaryotes |
| Q34785899 | Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum |
| Q37100344 | Genomic context analysis in Archaea suggests previously unrecognized links between DNA replication and translation |
| Q89143503 | Genomic organization underlying deletional robustness in bacterial metabolic systems |
| Q24653367 | Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world |
| Q36673438 | Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli |
| Q33304438 | Horizontal transfer of a nitrate assimilation gene cluster and ecological transitions in fungi: a phylogenetic study |
| Q35642535 | Identification and analysis of the bacterial endosymbiont specialized for production of the chemotherapeutic natural product ET-743. |
| Q35192752 | Identification of host-microbe interaction factors in the genomes of soft rot-associated pathogens Dickeya dadantii 3937 and Pectobacterium carotovorum WPP14 with supervised machine learning. |
| Q34152574 | Inferring Biological Mechanisms by Data-Based Mathematical Modelling: Compartment-Specific Gene Activation during Sporulation in Bacillus subtilis as a Test Case |
| Q34407774 | Interplay of gene expression noise and ultrasensitive dynamics affects bacterial operon organization. |
| Q34549704 | JContextExplorer: a tree-based approach to facilitate cross-species genomic context comparison |
| Q45946813 | LifeStyle-Specific-Islands (LiSSI): Integrated Bioinformatics Platform for Genomic Island Analysis. |
| Q41814570 | Metazoan operons accelerate recovery from growth-arrested states |
| Q41789820 | Minimal effect of gene clustering on expression in Escherichia coli |
| Q41971698 | Natural selection for operons depends on genome size. |
| Q35128127 | Non-canonical CRP sites control competence regulons in Escherichia coli and many other gamma-proteobacteria |
| Q40830862 | Ocean's Twelve: flagellar and biofilm chromids in the multipartite genome of Marinovum algicola DG898 exemplify functional compartmentalization |
| Q41642480 | Ongoing resolution of duplicate gene functions shapes the diversification of a metabolic network |
| Q37418706 | Operons |
| Q36098399 | Origins of flagellar gene operons and secondary flagellar systems |
| Q33313510 | Persistence drives gene clustering in bacterial genomes |
| Q47280089 | Phylogenetic Profiling of Mitochondrial Proteins and Integration Analysis of Bacterial Transcription Units Suggest Evolution of F1Fo ATP Synthase from Multiple Modules |
| Q34233339 | Reconstruction and regulation of the central catabolic pathway in the thermophilic propionate-oxidizing syntroph Pelotomaculum thermopropionicum. |
| Q33408037 | Recurring cluster and operon assembly for Phenylacetate degradation genes |
| Q33527129 | Relationship between operon preference and functional properties of persistent genes in bacterial genomes |
| Q33643748 | Replication-biased genome organisation in the crenarchaeon Sulfolobus |
| Q33616409 | Safety in numbers: multiple occurrences of highly similar homologs among Azotobacter vinelandii carbohydrate metabolism proteins probably confer adaptive benefits |
| Q35966780 | Signal correlations in ecological niches can shape the organization and evolution of bacterial gene regulatory networks |
| Q33459140 | Stochasticity in protein levels drives colinearity of gene order in metabolic operons of Escherichia coli |
| Q37571299 | Supra-operonic clusters of functionally related genes (SOCs) are a source of horizontal gene co-transfers |
| Q21092579 | The evolution of two-component systems in bacteria reveals different strategies for niche adaptation |
| Q33587309 | The evolutionary life cycle of the polysaccharide biosynthetic gene cluster based on the Sphingomonadaceae |
| Q21146027 | The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2 |
| Q33316397 | The impact of horizontal gene transfer in shaping operons and protein interaction networks--direct evidence of preferential attachment |
| Q33247453 | The life-cycle of operons |
| Q26852759 | The precarious prokaryotic chromosome |
| Q37141657 | The relative value of operon predictions. |
| Q21266691 | The transcriptional landscape of the deep-sea bacterium Photobacterium profundum in both a toxR mutant and its parental strain |
| Q37502218 | The transcriptome landscape of Prochlorococcus MED4 and the factors for stabilizing the core genome |
| Q36153034 | Theory of prokaryotic genome evolution |
| Q28478859 | Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris Hildenborough |
| Q36639057 | Two-way AIC: detection of differentially expressed genes from large scale microarray meta-dataset |
| Q35666678 | Uncovering major genomic features of essential genes in Bacteria and a methanogenic Archaea |
| Q37184672 | microRNAs in the Same Clusters Evolve to Coordinately Regulate Functionally Related Genes |
Search more.