| scholarly article | Q13442814 |
| P2093 | author name string | Edward C Cox | |
| Thomas E Kuhlman | |||
| P2860 | cites work | Cis-limited action of the gene-A product of bacteriophage phiX174 and the essential bacterial site (E. coli-electron microscopy-cis-acting protein-specifically-nicked RF). | Q34690431 |
| Imaging individual mRNA molecules using multiple singly labeled probes | Q34833213 | ||
| General properties of transcriptional time series in Escherichia coli | Q35009615 | ||
| How gene order is influenced by the biophysics of transcription regulation | Q35956720 | ||
| Chromosomal organization is shaped by the transcription regulatory network | Q36056176 | ||
| Transcriptional regulation by the numbers: models. | Q36083228 | ||
| Transcriptional regulation by the numbers: applications | Q36083233 | ||
| Spatial effects on the speed and reliability of protein-DNA search | Q36740092 | ||
| Regulation and epigenetic control of transcription at the nuclear periphery | Q36848733 | ||
| Theoretical and experimental approaches to understand morphogen gradients | Q37118479 | ||
| Active transcription of rRNA operons condenses the nucleoid in Escherichia coli: examining the effect of transcription on nucleoid structure in the absence of transertion | Q37232749 | ||
| RNA dynamics in live Escherichia coli cells | Q37388635 | ||
| Morphogen gradient formation | Q37672306 | ||
| Protein mobility in the cytoplasm of Escherichia coli. | Q38330173 | ||
| Quality and position of the three lac operators of E. coli define efficiency of repression. | Q40792607 | ||
| Transcriptional regulation shapes the organization of genes on bacterial chromosomes | Q41299259 | ||
| The two Escherichia coli chromosome arms locate to separate cell halves | Q41884613 | ||
| Coordination of genomic structure and transcription by the main bacterial nucleoid-associated protein HU. | Q42007285 | ||
| Operon formation is driven by co-regulation and not by horizontal gene transfer | Q42050891 | ||
| Bistability of the lac operon during growth of Escherichia coli on lactose and lactose+glucose | Q46774623 | ||
| The function of auxiliary operators | Q47694650 | ||
| Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory. | Q52732418 | ||
| Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions. | Q52732434 | ||
| Preferential cis action of IS10 transposase depends upon its mode of synthesis. | Q54654754 | ||
| An examination of the Cooper-Helmstetter theory of DNA replication in bacteria and its underlying assumptions | Q67064035 | ||
| Tn10 transposase acts preferentially on nearby transposon ends in vivo | Q67274108 | ||
| DNA synthesis during the division cycle of rapidly growing Escherichia coli B/r | Q69834498 | ||
| Diffusion-driven mechanisms of protein translocation on nucleic acids. 2. The Escherichia coli lac repressor-operator interaction: equilibrium measurements | Q72917038 | ||
| Statistical analysis of the spatial distribution of operons in the transcriptional regulation network of Escherichia coli | Q80557203 | ||
| Morphogen gradient formation in a complex environment: an anomalous diffusion model | Q82115733 | ||
| The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized mRNA | Q21145781 | ||
| Dynamic organization of chromosomal DNA in Escherichia coli | Q24610157 | ||
| Isolation of the lac repressor | Q24650471 | ||
| Induction of the lac promoter in the absence of DNA loops and the stoichiometry of induction | Q25257356 | ||
| One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products | Q27860842 | ||
| DNA zip codes control an ancient mechanism for gene targeting to the nuclear periphery | Q27940091 | ||
| A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications | Q28213193 | ||
| A self-associating protein critical for chromosome attachment, division, and polar organization in caulobacter | Q28485823 | ||
| Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements | Q29615996 | ||
| Quantitative and spatio-temporal features of protein aggregation in Escherichia coli and consequences on protein quality control and cellular ageing | Q30493630 | ||
| H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state | Q33279444 | ||
| The stringent response and cell cycle arrest in Escherichia coli | Q33392680 | ||
| On schemes of combinatorial transcription logic | Q33711386 | ||
| Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament. | Q33740115 | ||
| Chromosome Driven Spatial Patterning of Proteins in Bacteria | Q33750217 | ||
| Site-specific chromosomal integration of large synthetic constructs | Q33760274 | ||
| Genomic arrangement of bacterial operons is constrained by biological pathways encoded in the genome | Q33778615 | ||
| Spatial organization of the flow of genetic information in bacteria | Q33959096 | ||
| On the nature of cis-acting regulatory proteins and genetic organization in bacteriophage: the example of gene Q of bacteriophage lambda | Q33991257 | ||
| The three operators of the lac operon cooperate in repression | Q34028027 | ||
| Physical constraints and functional characteristics of transcription factor-DNA interaction. | Q34155055 | ||
| Chromosome replication and the division cycle of Escherichia coli B/r. | Q34220500 | ||
| Temporal dynamics of bacterial aging and rejuvenation | Q34228471 | ||
| Constancy of the ratio of DNA to cell volume in steady-state cultures of Escherichia coli B-r | Q34270421 | ||
| Chromosome and replisome dynamics in E. coli: loss of sister cohesion triggers global chromosome movement and mediates chromosome segregation | Q34278207 | ||
| Real-time kinetics of gene activity in individual bacteria | Q34477297 | ||
| Evidence against the selfish operon theory | Q34547963 | ||
| Escherichia coli sister chromosome separation includes an abrupt global transition with concomitant release of late-splitting intersister snaps. | Q34583046 | ||
| Probing transcription factor dynamics at the single-molecule level in a living cell | Q34631575 | ||
| P921 | main subject | Escherichia coli | Q25419 |
| P304 | page(s) | 610 | |
| P577 | publication date | 2012-01-01 | |
| P1433 | published in | Molecular Systems Biology | Q2261043 |
| P1476 | title | Gene location and DNA density determine transcription factor distributions in Escherichia coli | |
| P478 | volume | 8 |
| Q48245982 | Acceleration of bursty multiprotein target search kinetics on DNA by colocalisation. |
| Q35762450 | An Integrated System for Precise Genome Modification in Escherichia coli |
| Q38185182 | Bacterial growth: global effects on gene expression, growth feedback and proteome partition |
| Q38791509 | Bistability and Nonmonotonic Induction of the lac Operon in the Natural Lactose Uptake System |
| Q36823792 | Cellular organization of the transfer of genetic information. |
| Q35620180 | Chromosomal "stress-response" domains govern the spatiotemporal expression of the bacterial virulence program. |
| Q47399459 | Chromosomal organization of transcription: in a nutshell. |
| Q89747589 | Chromosomal origin of replication coordinates logically distinct types of bacterial genetic regulation |
| Q38388943 | Chromosomal position shift of a regulatory gene alters the bacterial phenotype. |
| Q35865022 | Concentration- and chromosome-organization-dependent regulator unbinding from DNA for transcription regulation in living cells |
| Q64241132 | CrfC Protein, a Nucleoid Partition Factor, Localizes to Nucleoid Poles via the Activities of Specific Nucleoid-Associated Proteins |
| Q40098135 | DNA thermodynamic stability and supercoil dynamics determine the gene expression program during the bacterial growth cycle |
| Q54304022 | DNA-binding-protein inhomogeneity in E. coli modeled as biphasic facilitated diffusion. |
| Q36305822 | Dichotomous noise models of gene switches |
| Q54294539 | Direct measurement of transcription factor dissociation excludes a simple operator occupancy model for gene regulation. |
| Q50962737 | Distance matters: the impact of gene proximity in bacterial gene regulation |
| Q33574360 | Effect of genomic distance on coexpression of coregulated genes in E. coli. |
| Q43050663 | Flexibility and symmetry of prokaryotic genome rearrangement reveal lineage-associated core-gene-defined genome organizational frameworks |
| Q38182184 | Foundations for modeling the dynamics of gene regulatory networks: a multilevel-perspective review |
| Q36897132 | Four-dimensional imaging of E. coli nucleoid organization and dynamics in living cells. |
| Q36280848 | GAAP: Genome-organization-framework-Assisted Assembly Pipeline for prokaryotic genomes |
| Q59127649 | Gene Expression Is Not Random: Scaling, Long-Range Cross-Dependence, and Fractal Characteristics of Gene Regulatory Networks |
| Q46189959 | Gene silencing and large-scale domain structure of the E. coli genome. |
| Q36963303 | Genome conformation capture reveals that the Escherichia coli chromosome is organized by replication and transcription |
| Q27311279 | Genomic location of the major ribosomal protein gene locus determines Vibrio cholerae global growth and infectivity |
| Q26745912 | Hard-Wired Control of Bacterial Processes by Chromosomal Gene Location |
| Q28088609 | Imaging and characterizing cells using tomography |
| Q58700745 | Impact of Chromosomal Architecture on the Function and Evolution of Bacterial Genomes |
| Q39483539 | In vivo kinetics of segregation and polar retention of MS2-GFP-RNA complexes in Escherichia coli |
| Q38114847 | Integration of syntactic and semantic properties of the DNA code reveals chromosomes as thermodynamic machines converting energy into information |
| Q36996756 | Knock-in/Knock-out (KIKO) vectors for rapid integration of large DNA sequences, including whole metabolic pathways, onto the Escherichia coli chromosome at well-characterised loci |
| Q42141297 | Localization of aggregating proteins in bacteria depends on the rate of addition |
| Q21563476 | Localization of protein aggregation in Escherichia coli is governed by diffusion and nucleoid macromolecular crowding effect |
| Q39466038 | Measurement of gene regulation in individual cells reveals rapid switching between promoter states |
| Q33644552 | Measuring mRNA copy number in individual Escherichia coli cells using single-molecule fluorescent in situ hybridization |
| Q27316297 | Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells |
| Q30994296 | Method for the analysis of contribution of sliding and hopping to a facilitated diffusion of DNA-binding protein: Application to in vivo data. |
| Q38680267 | Methods for studying RNA localization in bacteria |
| Q34735366 | Non-equilibrium polar localization of proteins in bacterial cells |
| Q30546230 | Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization. |
| Q28468461 | On the Spatial Organization of mRNA, Plasmids, and Ribosomes in a Bacterial Host Overexpressing Membrane Proteins |
| Q37518583 | Quantitative influence of macromolecular crowding on gene regulation kinetics. |
| Q40995655 | Real sequence effects on the search dynamics of transcription factors on DNA. |
| Q37065183 | Real-time transposable element activity in individual live cells. |
| Q47293875 | Recruitment of UvrBC complexes to UV-induced damage in the absence of UvrA increases cell survival. |
| Q41634547 | Ribosome biogenesis in replicating cells: Integration of experiment and theory |
| Q33893662 | Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus |
| Q35410976 | Space-induced bifurcation in repression-based transcriptional circuits |
| Q37200010 | Spatial organization of bacterial transcription and translation |
| Q36921874 | Spatial organization shapes the turnover of a bacterial transcriptome |
| Q33707494 | Statistical mechanical model of coupled transcription from multiple promoters due to transcription factor titration |
| Q55384281 | Structure-guided approach to site-specific fluorophore labeling of the lac repressor LacI. |
| Q41656608 | The MqsR/MqsA toxin/antitoxin system protects Escherichia coli during bile acid stress. |
| Q58561115 | The effect of macromolecular crowding on mobility of biomolecules, association kinetics, and gene expression in living cells |
| Q35004798 | The influence of transcription factor competition on the relationship between occupancy and affinity |
| Q26802027 | The spatial biology of transcription and translation in rapidly growing Escherichia coli |
| Q30582620 | The transcription factor titration effect dictates level of gene expression |
| Q48560879 | Tracking Low-Copy Transcription Factors in Living Bacteria: The Case of the lac Repressor. |
| Q36688311 | Whole Cell Modeling: From Single Cells to Colonies |
Search more.