| scholarly article | Q13442814 |
| P50 | author | Zeba Wunderlich | Q60033224 |
| P2093 | author name string | Leonid A Mirny | |
| P2860 | cites work | Selfish operons: horizontal transfer may drive the evolution of gene clusters | Q24533213 |
| How do site-specific DNA-binding proteins find their targets? | Q24563835 | ||
| EcoCyc: a comprehensive database resource for Escherichia coli | Q24796847 | ||
| The complete genome sequence of Escherichia coli K-12 | Q27860542 | ||
| Stochastic gene expression in a single cell | Q28131784 | ||
| The lac repressor-operator interaction. 3. Kinetic studies | Q28247930 | ||
| Control of stochasticity in eukaryotic gene expression | Q29615955 | ||
| Regulation of noise in the expression of a single gene | Q29616626 | ||
| A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA. | Q30477242 | ||
| Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA. | Q34091428 | ||
| High local protein concentrations at promoters: strategies in prokaryotic and eukaryotic cells | Q34136109 | ||
| Non-specific DNA binding of genome regulating proteins as a biological control mechanism: I. The lac operon: equilibrium aspects | Q34214782 | ||
| Real-time kinetics of gene activity in individual bacteria | Q34477297 | ||
| How proteins search for their specific sites on DNA: the role of DNA conformation | Q34481582 | ||
| Probing transcription factor dynamics at the single-molecule level in a living cell | Q34631575 | ||
| Gene Organization: Selection, Selfishness, and Serendipity | Q35550588 | ||
| Strong physical constraints on sequence-specific target location by proteins on DNA molecules. | Q35828558 | ||
| How gene order is influenced by the biophysics of transcription regulation | Q35956720 | ||
| Chromosomal organization is shaped by the transcription regulatory network | Q36056176 | ||
| Transcriptional regulation by the numbers: models. | Q36083228 | ||
| Transcriptional regulation by the numbers: applications | Q36083233 | ||
| The choreographed dynamics of bacterial chromosomes | Q36113291 | ||
| Living with noisy genes: how cells function reliably with inherent variability in gene expression | Q36810344 | ||
| In vivo DNA-binding properties of a yeast transcription activator protein | Q36921261 | ||
| Protein mobility in the cytoplasm of Escherichia coli. | Q38330173 | ||
| Diffusion controlled reaction rates in spheroidal geometry. Application to repressor--operator association and membrane bound enzymes | Q38360980 | ||
| Protein motion from non-specific to specific DNA by three-dimensional routes aided by supercoiling | Q39738169 | ||
| Kinetics of target site localization of a protein on DNA: a stochastic approach. | Q40295799 | ||
| Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential | Q40308402 | ||
| Quality and position of the three lac operators of E. coli define efficiency of repression. | Q40792607 | ||
| Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. | Q41594893 | ||
| Diffusion of transcription factors can drastically enhance the noise in gene expression | Q42989484 | ||
| Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory. | Q52732418 | ||
| Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions. | Q52732434 | ||
| Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes. | Q54502915 | ||
| Stochastic protein expression in individual cells at the single molecule level | Q57534158 | ||
| Diffusion-driven mechanisms of protein translocation on nucleic acids. 2. The Escherichia coli lac repressor-operator interaction: equilibrium measurements | Q72917038 | ||
| One-dimensional diffusion of proteins along DNA. Its biological and chemical significance revealed by single-molecule measurements | Q77772073 | ||
| How does a protein search for the specific site on DNA: The role of disorder | Q79199985 | ||
| Linking stochastic dynamics to population distribution: an analytical framework of gene expression | Q79418042 | ||
| Single molecule measurements of repressor protein 1D diffusion on DNA | Q80108659 | ||
| Statistical analysis of the spatial distribution of operons in the transcriptional regulation network of Escherichia coli | Q80557203 | ||
| Micromechanical analysis of the binding of DNA-bending proteins HMGB1, NHP6A, and HU reveals their ability to form highly stable DNA-protein complexes | Q80905930 | ||
| Optimal target search on a fast-folding polymer chain with volume exchange | Q82590729 | ||
| Thermodynamic origins of specificity in the lac repressor-operator interaction. Adaptability in the recognition of mutant operator sites | Q93673836 | ||
| P433 | issue | 11 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 3570-3578 | |
| P577 | publication date | 2008-05-03 | |
| P1433 | published in | Nucleic Acids Research | Q135122 |
| P1476 | title | Spatial effects on the speed and reliability of protein-DNA search | |
| P478 | volume | 36 |
| Q41997484 | A comprehensive computational model of facilitated diffusion in prokaryotes |
| Q33732793 | Abduction and asylum in the lives of transcription factors |
| Q37265699 | Accelerated search kinetics mediated by redox reactions of DNA repair enzymes |
| Q48245982 | Acceleration of bursty multiprotein target search kinetics on DNA by colocalisation. |
| Q30367987 | An integrated model of transcription factor diffusion shows the importance of intersegmental transfer and quaternary protein structure for target site finding. |
| Q90317374 | Argonaute bypasses cellular obstacles without hindrance during target search |
| Q41910033 | Charge-transport-mediated recruitment of DNA repair enzymes |
| Q34162148 | Complexity: against systems |
| Q33556999 | Computational models for large-scale simulations of facilitated diffusion |
| Q36635529 | Coordinated induction of multi-gene pathways in Saccharomyces cerevisiae |
| Q54304022 | DNA-binding-protein inhomogeneity in E. coli modeled as biphasic facilitated diffusion. |
| Q50962737 | Distance matters: the impact of gene proximity in bacterial gene regulation. |
| Q33908429 | Dynamic strategies for target-site search by DNA-binding proteins |
| Q58087149 | Facilitated Diffusion Mechanisms in DNA Base Excision Repair and Transcriptional Activation |
| Q43025109 | Facilitated diffusion buffers noise in gene expression |
| Q34099729 | First-passage time analysis of a one-dimensional diffusion-reaction model: application to protein transport along DNA. |
| Q38182184 | Foundations for modeling the dynamics of gene regulatory networks: a multilevel-perspective review |
| Q37061828 | Fungal genes in context: genome architecture reflects regulatory complexity and function |
| Q41891483 | GRiP: a computational tool to simulate transcription factor binding in prokaryotes |
| Q36321642 | Gene location and DNA density determine transcription factor distributions in Escherichia coli |
| Q50670964 | Hill function-based models of transcriptional switches: impact of specific, nonspecific, functional and nonfunctional binding. |
| Q30484241 | How DNA coiling enhances target localization by proteins |
| Q37262523 | How do proteins locate specific targets in DNA? |
| Q35956720 | How gene order is influenced by the biophysics of transcription regulation |
| Q42629846 | How subdiffusion changes the kinetics of binding to a surface. |
| Q34562478 | In vivo facilitated diffusion model |
| Q37932415 | Intrinsically disordered regions as affinity tuners in protein-DNA interactions |
| Q36205485 | Macromolecular Crowding Regulates the Gene Expression Profile by Limiting Diffusion |
| Q27938491 | Massively parallel measurements of molecular interaction kinetics on a microfluidic platform |
| Q37590028 | Mechanisms and evolution of control logic in prokaryotic transcriptional regulation. |
| Q30994296 | Method for the analysis of contribution of sliding and hopping to a facilitated diffusion of DNA-binding protein: Application to in vivo data. |
| Q51602387 | On the impact of the distance between two genes on their interaction curve. |
| Q54400678 | Packaging effects on site-specific DNA-protein interactions. |
| Q38735778 | Physical constraints determine the logic of bacterial promoter architectures. |
| Q34657800 | Promoter sequence determines the relationship between expression level and noise |
| Q57979131 | Protein motion in the nucleus: from anomalous diffusion to weak interactions |
| Q36932804 | Protein sliding and hopping kinetics on DNA. |
| Q51821398 | Quantifying hopping and jumping in facilitated diffusion of DNA-binding proteins. |
| Q64950479 | Quantifying the two-state facilitated diffusion model of protein-DNA interactions. |
| Q37518583 | Quantitative influence of macromolecular crowding on gene regulation kinetics. |
| Q37340789 | Redox signaling between DNA repair proteins for efficient lesion detection |
| Q37348683 | Regulation by transcription factors in bacteria: beyond description |
| Q37635330 | Single molecule approaches to transcription factor kinetics in living cells |
| Q34408678 | System size reduction in stochastic simulations of the facilitated diffusion mechanism |
| Q54631150 | Target search on a dynamic DNA molecule. |
| Q33767656 | Tethered-hopping model for protein-DNA binding and unbinding based on Sox2-Oct1-Hoxb1 ternary complex simulations |
| Q42656948 | The Role of Chromatin Density in Cell Population Heterogeneity during Stem Cell Differentiation |
| Q36197664 | The bZIP dimer localizes at DNA full-sites where each basic region can alternately translocate and bind to subsites at the half-site |
| Q42872252 | The effects of transcription factor competition on gene regulation |
| Q41902804 | The promoter-search mechanism of Escherichia coli RNA polymerase is dominated by three-dimensional diffusion |
| Q35218272 | Theoretical and computational modeling of target-site search kinetics in vitro and in vivo |
| Q59306602 | Theory of Site-Specific DNA-Protein Interactions in the Presence of Nucleosome Roadblocks |
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