In vivo facilitated diffusion model

scientific article

In vivo facilitated diffusion model is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode2013PLoSO...853956B
P818arXiv ID1301.5502
P356DOI10.1371/JOURNAL.PONE.0053956
P932PMC publication ID3548819
P698PubMed publication ID23349772
P5875ResearchGate publication ID235372127

P50authorRalf MetzlerQ42144273
P2093author name stringMaximilian Bauer
P2860cites workBacterial Chromosomal Loci Move Subdiffusively through a Viscoelastic CytoplasmQ27321158
Spatial and topological organization of DNA chains induced by gene co-localizationQ27335092
The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological mediaQ28209077
The lac repressor-operator interaction. 3. Kinetic studiesQ28247930
How DNA coiling enhances target localization by proteinsQ30484241
Entropy as the driver of chromosome segregationQ30503131
A Geometrical Model for DNA Organization in BacteriaQ33749733
Protein diffusion in mammalian cell cytoplasmQ34008764
Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA.Q34091428
Anomalous subdiffusion is a measure for cytoplasmic crowding in living cellsQ34187794
Effects of macromolecular crowding on genetic networksQ34243680
Target search of N sliding proteins on a DNAQ34350892
Probing transcription factor dynamics at the single-molecule level in a living cellQ34631575
Rapid search for specific sites on DNA through conformational switch of nonspecifically bound proteinsQ35008277
Theoretical and computational modeling of target-site search kinetics in vitro and in vivoQ35218272
Rapid and sequential movement of individual chromosomal loci to specific subcellular locations during bacterial DNA replicationQ35316481
A model for Escherichia coli chromosome packaging supports transcription factor-induced DNA domain formationQ35740517
How gene order is influenced by the biophysics of transcription regulationQ35956720
Topological domain structure of the Escherichia coli chromosomeQ36661286
Spatial effects on the speed and reliability of protein-DNA searchQ36740092
Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.Q36777856
Facilitated diffusion with DNA coiling.Q37208544
The organization of the bacterial genome.Q37208839
The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbationQ37418606
Physics of protein–DNA interactions: mechanisms of facilitated target searchQ37813036
Classes of fast and specific search mechanisms for proteins on DNA.Q38025896
Crowding and confinement effects on protein diffusion in vivoQ38501075
Kinetics of target site localization of a protein on DNA: a stochastic approach.Q40295799
Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potentialQ40308402
Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopyQ40773408
Internal structure and dynamics of isolated Escherichia coli nucleoids assessed by fluorescence correlation spectroscopyQ41943695
Generalized facilitated diffusion model for DNA-binding proteins with search and recognition statesQ42171094
Anomalous diffusion of proteins due to molecular crowding.Q42183795
Sampling the cell with anomalous diffusion - the discovery of slownessQ42810228
In vivo anomalous diffusion and weak ergodicity breaking of lipid granules.Q50685234
Narrow escape for a stochastically gated Brownian ligand.Q51594353
The effects of intersegmental transfers on target location by proteins.Q51856018
Physical nature of bacterial cytoplasm.Q52569911
Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.Q52732418
Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.Q52732434
The lac repressor displays facilitated diffusion in living cells.Q54333953
The random walk's guide to anomalous diffusion: a fractional dynamics approachQ57259133
Facilitated Diffusion of Proteins on ChromatinQ57318571
Single molecule measurements of repressor protein 1D diffusion on DNAQ80108659
Subdiffusion and weak ergodicity breaking in the presence of a reactive boundaryQ80742172
Facilitated diffusion on confined DNAQ83776058
Geometry-controlled kineticsQ84272328
Universality classes of first-passage-time distribution in confined mediaQ84505718
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue1
P407language of work or nameEnglishQ1860
P304page(s)e53956
P577publication date2013-01-18
P1433published inPLOS OneQ564954
P1476titleIn vivo facilitated diffusion model
P478volume8