Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns.

scientific article

Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1101/GR.101535.109
P932PMC publication ID2892098
P698PubMed publication ID20488932
P5875ResearchGate publication ID44617487

P50authorAnne H O'Donnell-LuriaQ57174270
P2093author name stringHanina Hibshoosh
Tao Su
Timothy H Bestor
Yutao Fu
Fatemeh Haghighi
Jay A Gingrich
John R Edwards
Robert A Rollins
Heather E Peckham
Maria H Milekic
Clarence Lee
Benjamin Chanrion
Robert Nutter
P2860cites workComprehensive high-throughput arrays for relative methylation (CHARM).Q42155651
Large-scale structure of genomic methylation patternsQ42186756
DNA methylation directs a time-dependent repression of transcription initiationQ48961033
Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors.Q51956004
DNA methylation represses FMR-1 transcription in fragile X syndromeQ52042005
Direct estimates of human per nucleotide mutation rates at 20 loci causing Mendelian diseasesQ78705444
Chromosome instability and immunodeficiency syndrome caused by mutations in a DNA methyltransferase geneQ22011158
DNA methylation profiling of human chromosomes 6, 20 and 22Q24607522
Genome-scale DNA methylation maps of pluripotent and differentiated cellsQ24621431
Genome-wide maps of chromatin state in pluripotent and lineage-committed cellsQ24632506
Human DNA methylomes at base resolution show widespread epigenomic differencesQ24633677
DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNAQ24645346
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysisQ24651226
High-resolution profiling of histone methylations in the human genomeQ27860906
Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 geneQ28145754
CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locusQ28145756
Histone modifications at human enhancers reflect global cell-type-specific gene expressionQ28238467
High-resolution mapping and characterization of open chromatin across the genomeQ28266995
MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germlineQ28507423
Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genomeQ29616819
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marksQ33371693
De novo methylation of the MyoD1 CpG island during the establishment of immortal cell linesQ33738027
An embryonic demethylation mechanism involving binding of transcription factors to replicating DNAQ33888429
Regulation of RNA splicing by the methylation-dependent transcriptional repressor methyl-CpG binding protein 2.Q34098728
The marks, mechanisms and memory of epigenetic states in mammalsQ34241071
Directional cloning of DNA fragments at a large distance from an initial probe: a circularization methodQ34245481
The somatic replication of DNA methylationQ34252488
Differential expression of a new dominant agouti allele (Aiapy) is correlated with methylation state and is influenced by parental lineageQ34323420
Cytosine methylation and mammalian developmentQ35186394
Distribution and characterization of regulatory elements in the human genomeQ35807015
In vitro methylation of the hamster adenine phosphoribosyltransferase gene inhibits its expression in mouse L cellsQ36297565
Modulation of DNA binding protein affinity directly affects target site demethylationQ39451604
DNA methylation density influences the stability of an epigenetic imprint and Dnmt3a/b-independent de novo methylation.Q39681641
P433issue7
P304page(s)972-980
P577publication date2010-05-20
P1433published inGenome ResearchQ5533485
P1476titleChromatin and sequence features that define the fine and gross structure of genomic methylation patterns
P478volume20

Reverse relations

cites work (P2860)
Q28481336A downstream CpG island controls transcript initiation and elongation and the methylation state of the imprinted Airn macro ncRNA promoter
Q36154766Advances in Genome-Wide DNA Methylation Analysis
Q48621071Age-related sperm DNA methylation changes are transmitted to offspring and associated with abnormal behavior and dysregulated gene expression.
Q36402756Agglomerates of aberrant DNA methylation are associated with toxicant-induced malignant transformation
Q34064494An integrated analysis of miRNA and mRNA expressions in non-small cell lung cancers
Q92214916Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition
Q35348043Cancer epigenetics: linking basic biology to clinical medicine.
Q36447319Characterization of CpG island DNA methylation of impairment-related genes in a rat model of cognitive aging
Q35094123Chromosome-wide DNA methylation analysis predicts human tissue-specific X inactivation
Q28252625Combining MeDIP-seq and MRE-seq to investigate genome-wide CpG methylation
Q90228357Conflicts of CpG density and DNA methylation are proximally and distally involved in gene regulation in human and mouse tissues
Q39452472Connecting the Dots Between Fatty Acids, Mitochondrial Function, and DNA Methylation in Atherosclerosis
Q30471505Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks
Q30560764CpG_MPs: identification of CpG methylation patterns of genomic regions from high-throughput bisulfite sequencing data
Q39003554Current and Emerging Technologies for the Analysis of the Genome-Wide and Locus-Specific DNA Methylation Patterns
Q92454584DNA Hydroxymethylation at the Interface of the Environment and Nonalcoholic Fatty Liver Disease
Q33651436DNA methylation and DNA methyltransferases.
Q42826399DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs
Q37021507DNA methylation in human epigenomes depends on local topology of CpG sites
Q52722157DNA methylation loss in late-replicating domains is linked to mitotic cell division.
Q33803762DNA methylation of the first exon is tightly linked to transcriptional silencing
Q26795714DNA methylation pathways and their crosstalk with histone methylation
Q37365439DNA methylation, a hand behind neurodegenerative diseases
Q35097146DNA sequence explains seemingly disordered methylation levels in partially methylated domains of Mammalian genomes.
Q36906176DNMT gene expression and methylome in Marek's disease resistant and susceptible chickens prior to and following infection by MDV.
Q38947913DNMT inhibitors reverse a specific signature of aberrant promoter DNA methylation and associated gene silencing in AML
Q28484353Deposition of histone variant H2A.Z within gene bodies regulates responsive genes
Q36759643Developmentally programmed 3' CpG island methylation confers tissue- and cell-type-specific transcriptional activation
Q35154309Diabetic embryopathy: a role for the epigenome?
Q92501574Diabetic kidney disease: A systematic review on the role of epigenetics as diagnostic and prognostic marker
Q21135559Different binding properties and function of CXXC zinc finger domains in Dnmt1 and Tet1
Q37080416Discovering high-resolution patterns of differential DNA methylation that correlate with gene expression changes
Q50318225Distinct histone modifications denote early stress-induced drug tolerance in cancer
Q28542556Do breast cancer cell lines provide a relevant model of the patient tumor methylome?
Q36280667Dynamic hydroxymethylation of deoxyribonucleic acid marks differentiation-associated enhancers
Q34199327Dynamic instability of genomic methylation patterns in pluripotent stem cells
Q35816712Engineering of a Histone-Recognition Domain in Dnmt3a Alters the Epigenetic Landscape and Phenotypic Features of Mouse ESCs.
Q33585930Epigenetic activation of the prostaglandin receptor EP4 promotes resistance to endocrine therapy for breast cancer
Q41430915Epigenetic interplay between mouse endogenous retroviruses and host genes
Q34302493Epigenetic mechanisms of depression and antidepressant action
Q24630926Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers
Q34051535Epigenome Mapping in Normal and Disease States
Q28710498Epigenome-wide association studies for common human diseases
Q38097110Epigenomics and the regulation of aging
Q37197814Estrogen receptor α can selectively repress dioxin receptor-mediated gene expression by targeting DNA methylation
Q33908086Expanded methyl-sensitive cut counting reveals hypomethylation as an epigenetic state that highlights functional sequences of the genome
Q38016516Functions of DNA methyltransferase 3-like in germ cells and beyond
Q36676606GC skew is a conserved property of unmethylated CpG island promoters across vertebrates
Q34471361Gene body methylation can alter gene expression and is a therapeutic target in cancer.
Q28481765Gene reactivation by 5-aza-2'-deoxycytidine-induced demethylation requires SRCAP-mediated H2A.Z insertion to establish nucleosome depleted regions
Q59297586Genome-Wide Epigenetic Studies in Chicken: A Review
Q51848794Genome-wide dynamic changes of DNA methylation of repetitive elements in human embryonic stem cells and fetal fibroblasts.
Q36194658High-Throughput Deep Sequencing for Mapping Mammalian DNA Methylation
Q36732444High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice
Q30301007Histone variants and epigenetics
Q92115848Identification of DNA motifs that regulate DNA methylation
Q38645698Implications of DNA Methylation in Parkinson's Disease.
Q57050209In Utero Heat Stress Alters the Offspring Epigenome
Q26998850Linking genome to epigenome
Q35581554Locus- and domain-dependent control of DNA methylation at mouse B1 retrotransposons during male germ cell development
Q42718487Loss of the polycomb mark from bivalent promoters leads to activation of cancer-promoting genes in colorectal tumors
Q64255786ME-Class2 reveals context dependent regulatory roles for 5-hydroxymethylcytosine
Q33936053Methyl-Analyzer--whole genome DNA methylation profiling
Q40394826Methylation Abnormalities in Mammary Carcinoma: The Methylation Suicide Hypothesis
Q35630756MethylomeDB: a database of DNA methylation profiles of the brain.
Q28728358Molecular genomic research designs
Q35699435Notes on the role of dynamic DNA methylation in mammalian development
Q39327365Possible role of intragenic DNA hypermethylation in gene silencing of the tumor suppressor gene NR4A3 in acute myeloid leukemia.
Q41627739Prediction of genome-wide DNA methylation in repetitive elements
Q30010218Proteome-wide detection of Abl1 SH3-binding peptides by integrating computational prediction and peptide microarray
Q24598562QDMR: a quantitative method for identification of differentially methylated regions by entropy
Q35876041Retrotransposition creates sloping shores: a graded influence of hypomethylated CpG islands on flanking CpG sites
Q34042729Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms
Q37179159Role of CpG context and content in evolutionary signatures of brain DNA methylation.
Q33764713Role of epigenetics in pulmonary hypertension
Q34154619Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine
Q35499095Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates
Q38065303The emerging role of DNA methylation in epileptogenesis
Q40467056The epigenetic landscape of Alu repeats delineates the structural and functional genomic architecture of colon cancer cells.
Q64899742The histone variant H2A.Z in gene regulation.
Q28727710The role of longitudinal cohort studies in epigenetic epidemiology: challenges and opportunities
Q38192573Transposable elements and psychiatric disorders
Q47228052Unlinking the methylome pattern from nucleotide sequence, revealed by large-scale in vivo genome engineering and methylome editing in medaka fish
Q36253242∆ DNMT3B4-del Contributes to Aberrant DNA Methylation Patterns in Lung Tumorigenesis

Search more.