Evaluation of the Consensus of Four Peptide Identification Algorithms for Tandem Mass Spectrometry Based Proteomics.

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Evaluation of the Consensus of Four Peptide Identification Algorithms for Tandem Mass Spectrometry Based Proteomics. is …
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scholarly articleQ13442814

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P356DOI10.4172/JPB.1000119
P932PMC publication ID2892992
P698PubMed publication ID20589240
P5875ResearchGate publication ID44853188

P50authorJames Lyons-WeilerQ48080773
Ruben K. DagdaQ57708033
P2093author name stringTamanna Sultana
P2860cites workOptimization of the Use of Consensus Methods for the Detection and Putative Identification of Peptides via Mass Spectrometry Using Protein Standard MixturesQ37358911
Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomicsQ40540118
An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysisQ42663473
Probability-based validation of protein identifications using a modified SEQUEST algorithmQ43884672
Qscore: an algorithm for evaluating SEQUEST database search resultsQ44727403
The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra.Q50993792
Probability-based protein identification by searching sequence databases using mass spectrometry dataQ27860736
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein databaseQ27861106
A statistical model for identifying proteins by tandem mass spectrometryQ28186251
OLAV: towards high-throughput tandem mass spectrometry data identificationQ28202185
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database searchQ28211385
TANDEM: matching proteins with tandem mass spectraQ29615238
Comparison of Mascot and X!Tandem performance for low and high accuracy mass spectrometry and the development of an adjusted Mascot thresholdQ30486531
SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database.Q30693039
OLAV-PMF: a novel scoring scheme for high-throughput peptide mass fingerprintingQ30758060
Evaluation of algorithms for protein identification from sequence databases using mass spectrometry dataQ30909732
Large scale analysis of MASCOT results using a Mass Accuracy-based THreshold (MATH) effectively improves data interpretationQ30998525
Comparative evaluation of tandem MS search algorithms using a target-decoy search strategyQ33285992
Large-scale database searching using tandem mass spectra: looking up the answer in the back of the bookQ36079215
P921main subjectalgorithmQ8366
P304page(s)39-47
P577publication date2010-02-01
P1433published inJournal of Proteomics and BioinformaticsQ24039997
P1476titleEvaluation of the Consensus of Four Peptide Identification Algorithms for Tandem Mass Spectrometry Based Proteomics
P478volume3