Optimization of the Use of Consensus Methods for the Detection and Putative Identification of Peptides via Mass Spectrometry Using Protein Standard Mixtures

scientific article published on June 2009

Optimization of the Use of Consensus Methods for the Detection and Putative Identification of Peptides via Mass Spectrometry Using Protein Standard Mixtures is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.4172/JPB.1000085
P932PMC publication ID2749508
P698PubMed publication ID19779596
P5875ResearchGate publication ID26836515

P50authorJames Lyons-WeilerQ48080773
P2093author name stringRick Jordan
Tamanna Sultana
P2860cites workProbability-based protein identification by searching sequence databases using mass spectrometry dataQ27860736
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein databaseQ27861106
A statistical model for identifying proteins by tandem mass spectrometryQ28186251
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database searchQ28211385
TANDEM: matching proteins with tandem mass spectraQ29615238
Enhancing peptide identification confidence by combining search methodsQ30486606
Evaluation of algorithms for protein identification from sequence databases using mass spectrometry dataQ30909732
Large scale analysis of MASCOT results using a Mass Accuracy-based THreshold (MATH) effectively improves data interpretationQ30998525
Comparative evaluation of tandem MS search algorithms using a target-decoy search strategyQ33285992
Optimization of filtering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomicsQ33296109
Informatics for protein identification by mass spectrometryQ36049609
Large-scale database searching using tandem mass spectra: looking up the answer in the back of the bookQ36079215
Verification of single-peptide protein identifications by the application of complementary database search algorithms.Q36661261
Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomicsQ40540118
An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysisQ42663473
Standards of excellence and open questions in cancer biomarker research: an informatics perspective.Q43160410
Probability-based validation of protein identifications using a modified SEQUEST algorithmQ43884672
Qscore: an algorithm for evaluating SEQUEST database search resultsQ44727403
High-throughput identification of proteins and unanticipated sequence modifications using a mass-based alignment algorithm for MS/MS de novo sequencing results.Q47776790
Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologiesQ47992982
P433issue6
P407language of work or nameEnglishQ1860
P304page(s)262-273
P577publication date2009-06-01
P1433published inJournal of Proteomics and BioinformaticsQ24039997
P1476titleOptimization of the Use of Consensus Methods for the Detection and Putative Identification of Peptides via Mass Spectrometry Using Protein Standard Mixtures
P478volume2

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cites work (P2860)
Q30987650Coherent pipeline for biomarker discovery using mass spectrometry and bioinformatics
Q60347235Combining High-Resolution and Exact Calibration To Boost Statistical Power: A Well-Calibrated Score Function for High-Resolution MS2 Data
Q37160902Combining results of multiple search engines in proteomics
Q34616750Discovery of mouse spleen signaling responses to anthrax using label-free quantitative phosphoproteomics via mass spectrometry
Q33944444Evaluation of the Consensus of Four Peptide Identification Algorithms for Tandem Mass Spectrometry Based Proteomics.
Q35083919MSblender: A probabilistic approach for integrating peptide identifications from multiple database search engines
Q42960165Practical and Efficient Searching in Proteomics: A Cross Engine Comparison

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