| scholarly article | Q13442814 |
| P50 | author | Alexey I. Nesvizhskii | Q37382438 |
| Eric W Deutsch | Q53584947 | ||
| P2093 | author name string | David Shteynberg | |
| Robert L Moritz | |||
| P2860 | cites work | The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search | Q35006588 |
| MSblender: A probabilistic approach for integrating peptide identifications from multiple database search engines | Q35083919 | ||
| A face in the crowd: recognizing peptides through database search | Q35579654 | ||
| File formats commonly used in mass spectrometry proteomics | Q36455695 | ||
| Optimization of the Use of Consensus Methods for the Detection and Putative Identification of Peptides via Mass Spectrometry Using Protein Standard Mixtures | Q37358911 | ||
| FDRAnalysis: a tool for the integrated analysis of tandem mass spectrometry identification results from multiple search engines | Q41847944 | ||
| An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis | Q42663473 | ||
| General framework for developing and evaluating database scoring algorithms using the TANDEM search engine | Q42693187 | ||
| Implementation and uses of automated de novo peptide sequencing by tandem mass spectrometry | Q43637771 | ||
| InsPecT: identification of posttranslationally modified peptides from tandem mass spectra | Q46259455 | ||
| Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies | Q47992982 | ||
| Semisupervised model-based validation of peptide identifications in mass spectrometry-based proteomics. | Q51897865 | ||
| Performance evaluation of existing de novo sequencing algorithms. | Q51929619 | ||
| Probabilistic Consensus Scoring Improves Tandem Mass Spectrometry Peptide Identification | Q57011814 | ||
| Global Survey of Human T Leukemic Cells by Integrating Proteomics and Transcriptomics Profiling | Q61631451 | ||
| OpenMS - an open-source software framework for mass spectrometry | Q21284208 | ||
| MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis | Q24657366 | ||
| Probability-based protein identification by searching sequence databases using mass spectrometry data | Q27860736 | ||
| An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database | Q27861106 | ||
| Integrated phosphoproteomics analysis of a signaling network governing nutrient response and peroxisome induction | Q27940381 | ||
| Mass spectrometry-based proteomics | Q28182890 | ||
| A statistical model for identifying proteins by tandem mass spectrometry | Q28186251 | ||
| PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry | Q28209613 | ||
| Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search | Q28211385 | ||
| Statistical validation of peptide identifications in large-scale proteomics using the target-decoy database search strategy and flexible mixture modeling | Q28260951 | ||
| Open mass spectrometry search algorithm | Q28286936 | ||
| The mzIdentML data standard for mass spectrometry-based proteomics results | Q28727227 | ||
| TANDEM: matching proteins with tandem mass spectra | Q29615238 | ||
| PEAKS DB: De Novo Sequencing Assisted Database Search for Sensitive and Accurate Peptide Identification | Q30053602 | ||
| A uniform proteomics MS/MS analysis platform utilizing open XML file formats | Q30478423 | ||
| Enhancing peptide identification confidence by combining search methods | Q30486606 | ||
| A guided tour of the Trans-Proteomic Pipeline | Q30497827 | ||
| Using annotated peptide mass spectrum libraries for protein identification | Q33252895 | ||
| Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries | Q33253787 | ||
| Development and validation of a spectral library searching method for peptide identification from MS/MS. | Q33273391 | ||
| Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics | Q33315747 | ||
| Data maximization by multipass analysis of protein mass spectra | Q33524863 | ||
| Computational analysis of unassigned high-quality MS/MS spectra in proteomic data sets | Q33573758 | ||
| Evaluation of the Consensus of Four Peptide Identification Algorithms for Tandem Mass Spectrometry Based Proteomics. | Q33944444 | ||
| iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates | Q34005153 | ||
| A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics | Q34207316 | ||
| Comet: an open-source MS/MS sequence database search tool | Q34311405 | ||
| PepNovo: de novo peptide sequencing via probabilistic network modeling | Q34414526 | ||
| P433 | issue | 9 | |
| P304 | page(s) | 2383-2393 | |
| P577 | publication date | 2013-05-29 | |
| P1433 | published in | Molecular & Cellular Proteomics | Q6895932 |
| P1476 | title | Combining results of multiple search engines in proteomics | |
| P478 | volume | 12 |
| Q30953835 | A Scalable Approach for Protein False Discovery Rate Estimation in Large Proteomic Data Sets |
| Q35950761 | A first dataset toward a standardized community-driven global mapping of the human immunopeptidome |
| Q39710865 | A multi-model statistical approach for proteomic spectral count quantitation |
| Q37432423 | A multicenter study benchmarks software tools for label-free proteome quantification |
| Q35724973 | A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies |
| Q36393100 | A tool for integrating genetic and mass spectrometry-based peptide data: Proteogenomics Viewer: PV: A genome browser-like tool, which includes MS data visualization and peptide identification parameters |
| Q37714211 | A turn-key approach for large-scale identification of complex posttranslational modifications |
| Q38686132 | Algorithms and design strategies towards automated glycoproteomics analysis. |
| Q35659656 | Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level. |
| Q42778374 | An Accessible Proteogenomics Informatics Resource for Cancer Researchers |
| Q31029234 | An evolving computational platform for biological mass spectrometry: workflows, statistics and data mining with MASSyPup64 |
| Q28546655 | An open-source computational and data resource to analyze digital maps of immunopeptidomes |
| Q36604367 | Analysis of Major Histocompatibility Complex (MHC) Immunopeptidomes Using Mass Spectrometry |
| Q35948036 | Analysis of the Cerebrospinal Fluid Proteome in Alzheimer's Disease |
| Q40267036 | Analyzing trapped protein complexes by Virotrap and SFINX. |
| Q47680249 | Anatomy and evolution of database search engines-a central component of mass spectrometry based proteomic workflows |
| Q30891496 | Building high-quality assay libraries for targeted analysis of SWATH MS data |
| Q41196636 | Cell wall proteomic of Brachypodium distachyon grains: A focus on cell wall remodeling proteins |
| Q30864255 | DIANA--algorithmic improvements for analysis of data-independent acquisition MS data |
| Q39099931 | Database Search Engines: Paradigms, Challenges and Solutions |
| Q28553927 | Demonstration of Protein-Based Human Identification Using the Hair Shaft Proteome |
| Q36566409 | Effective Leveraging of Targeted Search Spaces for Improving Peptide Identification in Tandem Mass Spectrometry Based Proteomics |
| Q38392041 | Exome-based proteogenomics of HEK-293 human cell line: Coding genomic variants identified at the level of shotgun proteome. |
| Q56983803 | Fast Open Modification Spectral Library Searching through Approximate Nearest Neighbor Indexing |
| Q57019435 | Future Prospects of Spectral Clustering Approaches in Proteomics |
| Q57804186 | Global Identification of Post-Translationally Spliced Peptides with Neo-Fusion |
| Q36948605 | Identification of Quantitative Proteomic Differences between Mycobacterium tuberculosis Lineages with Altered Virulence |
| Q64927142 | In-depth proteomic characterization of Schistosoma haematobium: Towards the development of new tools for elimination. |
| Q34635037 | JUMP: a tag-based database search tool for peptide identification with high sensitivity and accuracy |
| Q30787979 | MSDA, a proteomics software suite for in-depth Mass Spectrometry Data Analysis using grid computing. |
| Q38170020 | Machine learning applications in proteomics research: how the past can boost the future |
| Q36224324 | Methods to Calculate Spectrum Similarity |
| Q36600047 | Mining Missing Membrane Proteins by High-pH Reverse-Phase StageTip Fractionation and Multiple Reaction Monitoring Mass Spectrometry |
| Q47672176 | Misidentification of transthyretin and immunoglobulin variants by proteomics due to methyl lysine formation in formalin-fixed paraffin-embedded amyloid tissue |
| Q30372321 | Most highly expressed protein-coding genes have a single dominant isoform. |
| Q33771026 | N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana |
| Q30911195 | Navigating through metaproteomics data: a logbook of database searching |
| Q92820037 | Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages |
| Q30994995 | Optimization of Search Engines and Postprocessing Approaches to Maximize Peptide and Protein Identification for High-Resolution Mass Data |
| Q49024658 | PeptideShaker enables reanalysis of MS-derived proteomics data sets. |
| Q28083305 | Peptidomics for the discovery and characterization of neuropeptides and hormones |
| Q89874403 | Proline: an efficient and user-friendly software suite for large-scale proteomics |
| Q39501630 | Proteogenomic analysis of the total and surface-exposed proteomes of Plasmodium vivax salivary gland sporozoites |
| Q28649850 | Proteogenomics: concepts, applications and computational strategies |
| Q56985284 | Proteome and transcriptome profiling of equine myofibrillar myopathy identifies diminished peroxiredoxin 6 and altered cysteine metabolic pathways |
| Q91976646 | Proteomic Analysis for the Diagnosis of Fibrinogen Aα-chain Amyloidosis |
| Q36604303 | Proteomic Analysis of Engineered Cartilage |
| Q47318874 | Proteomic Cinderella: Customized analysis of bulky MS/MS data in one night |
| Q38419611 | Proteomic analysis of three Borrelia burgdorferi sensu lato native species and disseminating clones: relevance for Lyme vaccine design |
| Q63352285 | Quantitative Proteomics Data in the Public Domain: Challenges and Opportunities |
| Q30375585 | Quantitative proteomic analysis of histone modifications |
| Q38398091 | Rescuing discarded spectra: Full comprehensive analysis of a minimal proteome |
| Q42611907 | Site-specific identification and quantitation of endogenous SUMO modifications under native conditions. |
| Q57450501 | Snake Venom Proteopeptidomics: What Lies Behind the Curtain |
| Q37632829 | State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology- and disease-driven Human Proteome Project |
| Q38442888 | TUBEs-Mass Spectrometry for Identification and Analysis of the Ubiquitin-Proteome |
| Q34508052 | The 5300-year-old Helicobacter pylori genome of the Iceman |
| Q91343733 | The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases |
| Q41990341 | The SysteMHC Atlas project |
| Q39348860 | The impact of sequence database choice on metaproteomic results in gut microbiota studies |
| Q36519026 | The potential clinical impact of the release of two drafts of the human proteome |
| Q37395945 | Tiered Human Integrated Sequence Search Databases for Shotgun Proteomics |
| Q91045172 | Transcriptomics and proteomics reveal two waves of translational repression during the maturation of malaria parasite sporozoites |
| Q36232641 | Visualizing and comparing results of different peptide identification methods. |
| Q35792448 | reSpect: software for identification of high and low abundance ion species in chimeric tandem mass spectra |
Search more.