| scholarly article | Q13442814 |
| P50 | author | Alexey I. Nesvizhskii | Q37382438 |
| P2093 | author name string | Kang Ning | |
| Damian Fermin | |||
| P2860 | cites work | Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomics | Q40540118 |
| Identification of post-translational modifications by blind search of mass spectra. | Q42674213 | ||
| General framework for developing and evaluating database scoring algorithms using the TANDEM search engine | Q42693187 | ||
| Novel peptide identification from tandem mass spectra using ESTs and sequence database compression | Q42801019 | ||
| Prediction of low-energy collision-induced dissociation spectra of peptides | Q46153832 | ||
| InsPecT: identification of posttranslationally modified peptides from tandem mass spectra | Q46259455 | ||
| Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies | Q47992982 | ||
| Improved validation of peptide MS/MS assignments using spectral intensity prediction. | Q51124615 | ||
| SPIDER: software for protein identification from sequence tags with de novo sequencing error. | Q51966249 | ||
| Mining a tandem mass spectrometry database to determine the trends and global factors influencing peptide fragmentation. | Q52008068 | ||
| Global Survey of Human T Leukemic Cells by Integrating Proteomics and Transcriptomics Profiling | Q61631451 | ||
| Extent of Modifications in Human Proteome Samples and Their Effect on Dynamic Range of Analysis in Shotgun Proteomics | Q61788057 | ||
| dbSNP: the NCBI database of genetic variation | Q24608672 | ||
| BLAT—The BLAST-Like Alignment Tool | Q24682492 | ||
| Probability-based protein identification by searching sequence databases using mass spectrometry data | Q27860736 | ||
| An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database | Q27861106 | ||
| A statistical model for identifying proteins by tandem mass spectrometry | Q28186251 | ||
| PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry | Q28209613 | ||
| Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search | Q28211385 | ||
| Statistical validation of peptide identifications in large-scale proteomics using the target-decoy database search strategy and flexible mixture modeling | Q28260951 | ||
| Automated protein identification by tandem mass spectrometry: issues and strategies | Q28281533 | ||
| Error-tolerant identification of peptides in sequence databases by peptide sequence tags | Q28306769 | ||
| The International Protein Index: an integrated database for proteomics experiments | Q29614533 | ||
| TANDEM: matching proteins with tandem mass spectra | Q29615238 | ||
| Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics | Q30477869 | ||
| Interrogating the human genome using uninterpreted mass spectrometry data | Q30664317 | ||
| Method for screening peptide fragment ion mass spectra prior to database searching | Q30865545 | ||
| Analysis and validation of proteomic data generated by tandem mass spectrometry | Q31131394 | ||
| Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: II. New developments in Protein Prospector allow for reliab | Q33216495 | ||
| ProbIDtree: an automated software program capable of identifying multiple peptides from a single collision-induced dissociation spectrum collected by a tandem mass spectrometer | Q33224301 | ||
| Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides | Q33229418 | ||
| Improving the reliability and throughput of mass spectrometry-based proteomics by spectrum quality filtering | Q33235552 | ||
| Using annotated peptide mass spectrum libraries for protein identification | Q33252895 | ||
| Development and validation of a spectral library searching method for peptide identification from MS/MS. | Q33273391 | ||
| DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra | Q33321473 | ||
| Building consensus spectral libraries for peptide identification in proteomics | Q33370900 | ||
| A simulated MS/MS library for spectrum-to-spectrum searching in large scale identification of proteins | Q33395570 | ||
| Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma | Q33794491 | ||
| PepNovo: de novo peptide sequencing via probabilistic network modeling | Q34414526 | ||
| Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20. | Q35162038 | ||
| Improving gene annotation using peptide mass spectrometry | Q35608692 | ||
| P433 | issue | 14 | |
| P304 | page(s) | 2712-2718 | |
| P577 | publication date | 2010-07-01 | |
| P1433 | published in | Proteomics | Q15614164 |
| P1476 | title | Computational analysis of unassigned high-quality MS/MS spectra in proteomic data sets | |
| P478 | volume | 10 |
| Q34061933 | A semi-empirical approach for predicting unobserved peptide MS/MS spectra from spectral libraries |
| Q34207316 | A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics |
| Q35058833 | A survey of molecular descriptors used in mass spectrometry based proteomics |
| Q37945792 | Algorithms for the de novo sequencing of peptides from tandem mass spectra |
| Q33806695 | Building and searching tandem mass (MS/MS) spectral libraries for peptide identification in proteomics |
| Q34013376 | Building and searching tandem mass spectral libraries for peptide identification |
| Q37160902 | Combining results of multiple search engines in proteomics |
| Q38669393 | Common errors in mass spectrometry-based analysis of post-translational modifications |
| Q37116117 | Comparison of protein expression ratios observed by sixplex and duplex TMT labeling method |
| Q37072907 | Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq |
| Q39104627 | Forensic proteomics of poxvirus production |
| Q34719011 | Improving peptide identification sensitivity in shotgun proteomics by stratification of search space |
| Q35162490 | Integrating genomic, transcriptomic, and interactome data to improve Peptide and protein identification in shotgun proteomics |
| Q30372969 | MALDI-TOF MS and CD spectral analysis for identification and structure prediction of a purified, novel, organic solvent stable, fibrinolytic metalloprotease from Bacillus cereus B80 |
| Q30787979 | MSDA, a proteomics software suite for in-depth Mass Spectrometry Data Analysis using grid computing. |
| Q38844572 | MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry-based proteomics |
| Q35083919 | MSblender: A probabilistic approach for integrating peptide identifications from multiple database search engines |
| Q43513828 | Mass spectrum sequential subtraction speeds up searching large peptide MS/MS spectra datasets against large nucleotide databases for proteogenomics. |
| Q31112255 | Metaproteomic data analysis at a glance: advances in computational microbial community proteomics |
| Q47624929 | Post-translational modifications as key regulators of apicomplexan biology: insights from proteome-wide studies. |
| Q38918710 | Proteogenomic studies on cancer drug resistance: towards biomarker discovery and target identification |
| Q38660073 | Proteogenomics approaches for studying cancer biology and their potential in the identification of acute myeloid leukemia biomarkers |
| Q37190570 | Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation |
| Q28649850 | Proteogenomics: concepts, applications and computational strategies |
| Q58886178 | Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides. |
| Q42127370 | ScanRanker: Quality assessment of tandem mass spectra via sequence tagging |
| Q39610972 | Sequence tagging reveals unexpected modifications in toxicoproteomics |
| Q35855111 | Spectral library searching in proteomics |
| Q33885563 | Spectrum-to-spectrum searching using a proteome-wide spectral library |
| Q31020487 | The need to revisit published data: A concept and framework for complementary proteomics |
| Q33776304 | The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment |
| Q33813831 | Understanding the improved sensitivity of spectral library searching over sequence database searching in proteomics data analysis |
Search more.