| scholarly article | Q13442814 |
| P50 | author | Debashis Ghosh | Q30004042 |
| Alexey I. Nesvizhskii | Q37382438 | ||
| Choi Hyungwon | Q56801152 | ||
| P433 | issue | 1 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | database | Q8513 |
| statistics | Q12483 | ||
| P304 | page(s) | 286-92 | |
| P577 | publication date | 2008-01-01 | |
| P1433 | published in | Journal of Proteome Research | Q3186939 |
| P1476 | title | Statistical validation of peptide identifications in large-scale proteomics using the target-decoy database search strategy and flexible mixture modeling | |
| P478 | volume | 7 |
| Q30497827 | A guided tour of the Trans-Proteomic Pipeline |
| Q34061933 | A semi-empirical approach for predicting unobserved peptide MS/MS spectra from spectral libraries |
| Q35539344 | A statistical method for assessing peptide identification confidence in accurate mass and time tag proteomics |
| Q34486639 | A statistical model-building perspective to identification of MS/MS spectra with PeptideProphet |
| Q34207316 | A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics |
| Q37412779 | A systems biology approach to study the phagosomal proteome modulated by mycobacterial infections. |
| Q37097028 | Adaptive discriminant function analysis and reranking of MS/MS database search results for improved peptide identification in shotgun proteomics |
| Q37113889 | Bayesian nonparametric model for the validation of peptide identification in shotgun proteomics |
| Q30381459 | Beyond the E-Value: Stratified Statistics for Protein Domain Prediction. |
| Q37160902 | Combining results of multiple search engines in proteomics |
| Q33573758 | Computational analysis of unassigned high-quality MS/MS spectra in proteomic data sets |
| Q35751671 | Direct maximization of protein identifications from tandem mass spectra |
| Q37072907 | Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq |
| Q50642417 | Doubling down on phosphorylation as a variable peptide modification. |
| Q30939895 | EBprot: Statistical analysis of labeling-based quantitative proteomics data. |
| Q90676203 | Effects of cre1 modification in the white-rot fungus Pleurotus ostreatus PC9: altering substrate preference during biological pretreatment |
| Q30621030 | Evaluation and optimization of mass spectrometric settings during data-dependent acquisition mode: focus on LTQ-Orbitrap mass analyzers |
| Q36019660 | Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification. |
| Q58613502 | Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences |
| Q33607524 | IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering |
| Q37621025 | Identification of a novel BET bromodomain inhibitor-sensitive, gene regulatory circuit that controls Rituximab response and tumour growth in aggressive lymphoid cancers. |
| Q37097041 | Improved sequence tag generation method for peptide identification in tandem mass spectrometry |
| Q33433611 | Improvements to the percolator algorithm for Peptide identification from shotgun proteomics data sets |
| Q34156604 | In-silico studies in Chinese herbal medicines' research: evaluation of in-silico methodologies and phytochemical data sources, and a review of research to date |
| Q36399003 | Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS. |
| Q33688301 | Integrated data management and validation platform for phosphorylated tandem mass spectrometry data |
| Q33421651 | Integrating shotgun proteomics and mRNA expression data to improve protein identification |
| Q37626189 | Large-scale mass spectrometric detection of variant peptides resulting from nonsynonymous nucleotide differences |
| Q34983181 | Liquid Chromatography Mass Spectrometry-Based Proteomics: Biological and Technological Aspects |
| Q38844572 | MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry-based proteomics |
| Q33636054 | Mapping protein abundance patterns in the brain using voxelation combined with liquid chromatography and mass spectrometry |
| Q43079229 | Mascot-derived false positive peptide identifications revealed by manual analysis of tandem mass spectra |
| Q37027481 | Modes of inference for evaluating the confidence of peptide identifications |
| Q38836058 | Non-linear classification for on-the-fly fractional mass filtering and targeted precursor fragmentation in mass spectrometry experiments |
| Q42005545 | Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry |
| Q98192776 | NuRD subunit CHD4 regulates super-enhancer accessibility in Rhabdomyosarcoma and represents a general tumor dependency |
| Q40741382 | On using samples of known protein content to assess the statistical calibration of scores assigned to peptide-spectrum matches in shotgun proteomics |
| Q30994995 | Optimization of Search Engines and Postprocessing Approaches to Maximize Peptide and Protein Identification for High-Resolution Mass Data |
| Q43700983 | PepDistiller: A quality control tool to improve the sensitivity and accuracy of peptide identifications in shotgun proteomics |
| Q34600986 | Protein analysis by shotgun/bottom-up proteomics |
| Q37988996 | Protein inference: a review. |
| Q57909981 | Quality assessments of peptide-spectrum matches in shotgun proteomics |
| Q37294428 | Rapid validation of Mascot search results via stable isotope labeling, pair picking, and deconvolution of fragmentation patterns |
| Q37029033 | Refining comparative proteomics by spectral counting to account for shared peptides and multiple search engines |
| Q30542917 | SAINT-MS1: protein-protein interaction scoring using label-free intensity data in affinity purification-mass spectrometry experiments |
| Q41906679 | Simplified validation of borderline hits of database searches |
| Q38616270 | Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses |
| Q64078109 | The Dual Prey-Inactivation Strategy of Spiders-In-Depth Venomic Analysis of |
| Q37214717 | The GlycoFilter: a simple and comprehensive sample preparation platform for proteomics, N-glycomics and glycosylation site assignment |
| Q33524864 | Trans-Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets |
| Q94517802 | Transfer posterior error probability estimation for peptide identification |
| Q33583201 | Transferred subgroup false discovery rate for rare post-translational modifications detected by mass spectrometry |
| Q33813831 | Understanding the improved sensitivity of spectral library searching over sequence database searching in proteomics data analysis |
| Q31104498 | Untargeted, spectral library-free analysis of data-independent acquisition proteomics data generated using Orbitrap mass spectrometers |
| Q34005153 | iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates |
Search more.