Non-linear classification for on-the-fly fractional mass filtering and targeted precursor fragmentation in mass spectrometry experiments

scientific article published on 4 February 2010

Non-linear classification for on-the-fly fractional mass filtering and targeted precursor fragmentation in mass spectrometry experiments is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bioinformatics/KirchnerTFWS10
P356DOI10.1093/BIOINFORMATICS/BTQ036
P932PMC publication ID3202308
P698PubMed publication ID20134030
P5875ResearchGate publication ID41408880

P50authorPhiline WangemannQ124360509
P2093author name stringHanno Steen
Wiebke Timm
Peying Fong
Marc Kirchner
P2860cites work"Mass defect" tags for biomolecular mass spectrometryQ73851832
MSE with mass defect filtering for in vitro and in vivo metabolite identificationQ80061884
Fractional mass filtering as a means to assess circulating metabolites in early human clinical studiesQ82289471
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteinsQ24676525
Statistical validation of peptide identifications in large-scale proteomics using the target-decoy database search strategy and flexible mixture modelingQ28260951
Mass spectrometric analysis of a UV-cross-linked protein-DNA complex: tryptophans 54 and 88 of E. coli SSB cross-link to DNAQ28359782
Probabilistic enrichment of phosphopeptides by their mass defectQ28757060
Analytical model of peptide mass cluster centres with applicationsQ28767077
Enhanced peptide mass fingerprinting through high mass accuracy: Exclusion of non-peptide signals based on residual massQ33242223
Application of fractional mass for the identification of peptide-oligonucleotide cross-links by mass spectrometryQ33322570
NITPICK: peak identification for mass spectrometry dataQ33364583
Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry dataQ33418947
Accessible proteomics space and its implications for peak capacity for zero-, one- and two-dimensional separations coupled with FT-ICR and TOF mass spectrometryQ36421814
Improved detection of reactive metabolites with a bromine-containing glutathione analog using mass defect and isotope pattern matchingQ43099917
Analysis of bromotryptophan and hydroxyproline modifications by high-resolution, high-accuracy precursor ion scanning utilizing fragment ions with mass-deficient mass tagsQ44268443
Mass defect profiles of biological matrices and the general applicability of mass defect filtering for metabolite detectionQ46567499
Automatic deconvolution of isotope-resolved mass spectra using variable selection and quantized peptide mass distribution.Q51941915
Strategy for the Identification of Sites of Phosphorylation in Proteins: Neutral Loss Triggered Electron Capture DissociationQ62564198
The information encrypted in accurate peptide masses-improved protein identification and assistance in glycopeptide identification and characterizationQ73291174
P433issue6
P407language of work or nameEnglishQ1860
P1104number of pages7
P304page(s)791-797
P577publication date2010-02-04
P1433published inBioinformaticsQ4914910
P1476titleNon-linear classification for on-the-fly fractional mass filtering and targeted precursor fragmentation in mass spectrometry experiments
P478volume26

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cites work (P2860)
Q36742387A classifier based on accurate mass measurements to aid large scale, unbiased glycoproteomics
Q39223438Application of the half decimal place rule to increase the peptide identification rate
Q33606469Bioassay-directed fractionation for discovery of bioactive neutral lipids guided by relative mass defect filtering and multiplexed collision-induced dissociation.
Q50117543Case studies in reproducibility
Q51028814Feature selection and classification of leukocytes using random forest.
Q59811157Intelligence Algorithms for Protein Classification by Mass Spectrometry
Q35896436The use of classification trees for bioinformatics
Q34523139Towards automated discrimination of lipids versus peptides from full scan mass spectra
Q31104498Untargeted, spectral library-free analysis of data-independent acquisition proteomics data generated using Orbitrap mass spectrometers

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