The mzIdentML data standard for mass spectrometry-based proteomics results

scientific article (publication date: July 2012)

The mzIdentML data standard for mass spectrometry-based proteomics results is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1074/MCP.M111.014381
P3181OpenCitations bibliographic resource ID686297
P932PMC publication ID3394945
P698PubMed publication ID22375074

P50authorHenning HermjakobQ28833307
Simon J. HubbardQ39451789
Andrew JonesQ42825384
Oliver KohlbacherQ29998906
Juan Antonio VizcaínoQ29998931
Florian ReisingerQ29998937
Johannes GrissQ29998980
Angel PizarroQ30528096
Pierre-Alain BinzQ48767863
Gerhard MayerQ53584882
Julian N SelleyQ53584903
Eric W DeutschQ53584947
Martin EisenacherQ90124535
James ShofstahlQ114313911
P2093author name stringBrian C Searle
Sean L Seymour
Randall Julian
Matthew Chambers
David Creasy
Jennifer Siepen
P2860cites workOpenMS - an open-source software framework for mass spectrometryQ21284208
PRIDE: a public repository of protein and peptide identifications for the proteomics communityQ25256918
The PeptideAtlas projectQ25257813
Probability-based protein identification by searching sequence databases using mass spectrometry dataQ27860736
A statistical model for identifying proteins by tandem mass spectrometryQ28186251
OLAV: towards high-throughput tandem mass spectrometry data identificationQ28202185
PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometryQ28209613
Open mass spectrometry search algorithmQ28286936
mzML: a single, unifying data format for mass spectrometer outputQ28288469
Error-tolerant identification of peptides in sequence databases by peptide sequence tagsQ28306769
mzML--a community standard for mass spectrometry dataQ28743778
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometryQ29547311
Proteomics and Beyond: a report on the 3rd Annual Spring Workshop of the HUPO-PSI 21-23 April 2006, San Francisco, CA, USA.Q38443331
Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search enginesQ41822004
Implementation and uses of automated de novo peptide sequencing by tandem mass spectrometryQ43637771
Probability-based validation of protein identifications using a modified SEQUEST algorithmQ43884672
The minimum information about a proteomics experiment (MIAPE)Q29615391
A uniform proteomics MS/MS analysis platform utilizing open XML file formatsQ30478423
Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles)Q30485191
A systematic approach to modeling, capturing, and disseminating proteomics experimental dataQ30773113
ProFound: an expert system for protein identification using mass spectrometric peptide mapping informationQ30880899
Open source system for analyzing, validating, and storing protein identification dataQ30978337
Automated reprocessing pipeline for searching heterogeneous mass spectrometric data of the HUPO Brain Proteome Project pilot phaseQ31056380
An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics dataQ31141751
Using annotated peptide mass spectrum libraries for protein identificationQ33252895
Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactionsQ33302066
Using BiblioSpec for creating and searching tandem MS peptide librariesQ33329957
ProteoWizard: open source software for rapid proteomics tools developmentQ33349681
Building consensus spectral libraries for peptide identification in proteomicsQ33370900
The PSI semantic validator: a framework to check MIAPE compliance of proteomics dataQ33510960
A community standard format for the representation of protein affinity reagentsQ33597942
A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemesQ34182025
PepNovo: de novo peptide sequencing via probabilistic network modelingQ34414526
TOPP--the OpenMS proteomics pipelineQ34604124
The PSI formal document process and its implementation on the PSI websiteQ36849890
The minimum information required for reporting a molecular interaction experiment (MIMIx).Q36905469
Assigning significance to peptides identified by tandem mass spectrometry using decoy databasesQ37027478
InsPecT: identification of posttranslationally modified peptides from tandem mass spectraQ46259455
Unimod: Protein modifications for mass spectrometryQ47403412
The need for guidelines in publication of peptide and protein identification data: Working Group on Publication Guidelines for Peptide and Protein Identification DataQ47788235
Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologiesQ47992982
The HUPO pre-congress Proteomics Standards Initiative workshop. HUPO 5th annual World Congress. Long Beach, CA, USA 28 October-1 November 2006.Q50799889
The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra.Q50993792
Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles).Q50994907
Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles).Q50995899
Annual spring meeting of the Proteomics Standards Initiative 23-25 April 2008, Toledo, Spain.Q51123043
Reporting protein identification data: the next generation of guidelines.Q55041930
Guidelines for reporting the use of mass spectrometry in proteomics.Q55050369
Guidelines for reporting the use of mass spectrometry informatics in proteomics.Q55050371
Guidelines for reporting the use of gel electrophoresis in proteomics.Q55050375
The PSI-MOD community standard for representation of protein modification data.Q55050379
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomicsQ56889083
Autumn 2005 Workshop of the Human Proteome Organisation Proteomics Standards Initiative (HUPO-PSI) Geneva, September, 4–6, 2005Q56891308
Probabilistic Consensus Scoring Improves Tandem Mass Spectrometry Peptide IdentificationQ57011814
Credit where credit is overdueQ84197862
P433issue7
P407language of work or nameEnglishQ1860
P921main subjectdata standardQ45941145
P304page(s)M111.014381
P577publication date2012-07-01
P1433published inMolecular & Cellular ProteomicsQ6895932
P1476titleThe mzIdentML data standard for mass spectrometry-based proteomics results
P478volume11

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