| P2093 | author name string | Alexey I Nesvizhskii | |
| | Avinash K Shanmugam | |
| P2860 | cites work | Ensembl 2014 | Q24567767 |
| | TopHat: discovering splice junctions with RNA-Seq | Q24655505 |
| | The PeptideAtlas project | Q25257813 |
| | Fast gapped-read alignment with Bowtie 2 | Q27860699 |
| | Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search | Q28211385 |
| | Proteogenomics: concepts, applications and computational strategies | Q28649850 |
| | Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses | Q29547647 |
| | TANDEM: matching proteins with tandem mass spectra | Q29615238 |
| | A guided tour of the Trans-Proteomic Pipeline | Q30497827 |
| | The CRAPome: a contaminant repository for affinity purification-mass spectrometry data | Q30660043 |
| | customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search | Q30668844 |
| | The use of proteotypic peptide libraries for protein identification | Q30854911 |
| | DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics | Q30884914 |
| | Open source system for analyzing, validating, and storing protein identification data | Q30978337 |
| | Interpretation of shotgun proteomic data: the protein inference problem | Q30993883 |
| | Data maximization by multipass analysis of protein mass spectra | Q33524863 |
| | Understanding the improved sensitivity of spectral library searching over sequence database searching in proteomics data analysis | Q33813831 |
| | iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates | Q34005153 |
| | Protein identification using customized protein sequence databases derived from RNA-Seq data | Q34079606 |
| | Utility of RNA-seq and GPMDB protein observation frequency for improving the sensitivity of protein identification by tandem MS | Q34141742 |
| | Comparative analysis of different label-free mass spectrometry based protein abundance estimates and their correlation with RNA-Seq gene expression data | Q34157419 |
| | Computing exact p-values for a cross-correlation shotgun proteomics score function | Q34157708 |
| | A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics | Q34207316 |
| | Comet: an open-source MS/MS sequence database search tool | Q34311405 |
| | The Q Exactive HF, a Benchtop mass spectrometer with a pre-filter, high-performance quadrupole and an ultra-high-field Orbitrap analyzer | Q34635058 |
| | Combining results of multiple search engines in proteomics | Q37160902 |
| | MS-GF+ makes progress towards a universal database search tool for proteomics | Q37283260 |
| | Addressing statistical biases in nucleotide-derived protein databases for proteogenomic search strategies | Q41894428 |
| | Deep coverage of the Escherichia coli proteome enables the assessment of false discovery rates in simple proteogenomic experiments | Q42917663 |
| | Semisupervised model-based validation of peptide identifications in mass spectrometry-based proteomics. | Q51897865 |
| | Computational prediction of proteotypic peptides for quantitative proteomics. | Q51925913 |
| P433 | issue | 12 | |
| P921 | main subject | RNA sequencing | Q2542347 |
| P304 | page(s) | 5169-5178 | |
| P577 | publication date | 2015-11-16 | |
| P1433 | published in | Journal of Proteome Research | Q3186939 |
| P1476 | title | Effective Leveraging of Targeted Search Spaces for Improving Peptide Identification in Tandem Mass Spectrometry Based Proteomics | |
| P478 | volume | 14 | |