Global Identification of Post-Translationally Spliced Peptides with Neo-Fusion

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Global Identification of Post-Translationally Spliced Peptides with Neo-Fusion is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1021/ACS.JPROTEOME.8B00651
P932PMC publication ID6465104
P698PubMed publication ID30346791

P50authorStefan K SolntsevQ56224030
Brian L FreyQ88173747
Zach RolfsQ88790543
P2093author name stringLloyd M Smith
Michael R Shortreed
P2860cites workThe PeptideAtlas projectQ25257813
WebLogo: A Sequence Logo GeneratorQ27860646
PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometryQ28209613
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013Q28710185
Universal sample preparation method for proteome analysisQ29615662
Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen PresentationQ30002365
Application of de Novo Sequencing to Large-Scale Complex Proteomics Data SetsQ31035849
Sequence-specific retention calculator. Algorithm for peptide retention prediction in ion-pair RP-HPLC: application to 300- and 100-A pore size C18 sorbentsQ33263558
Global Post-Translational Modification DiscoveryQ33551556
The 20S proteasome splicing activity discovered by SpliceMetQ33627497
Pathways of antigen processingQ33631854
An antigenic peptide produced by reverse splicing and double asparagine deamidationQ34192290
An antigenic peptide produced by peptide splicing in the proteasomeQ34303301
An antigen produced by splicing of noncontiguous peptides in the reverse order.Q34564542
Definition of Proteasomal Peptide Splicing Rules for High-Efficiency Spliced Peptide Presentation by MHC Class I MoleculesQ35786206
Global Identification of Protein Post-translational Modifications in a Single-Pass Database SearchQ36272452
A proteomics search algorithm specifically designed for high-resolution tandem mass spectraQ36650680
Proteasomes generate spliced epitopes by two different mechanisms and as efficiently as non-spliced epitopesQ36769053
Pathogenic CD4 T cells in type 1 diabetes recognize epitopes formed by peptide fusionQ36945852
Combining results of multiple search engines in proteomicsQ37160902
MHC class I-associated peptides derive from selective regions of the human genomeQ37452154
A large fraction of HLA class I ligands are proteasome-generated spliced peptides.Q38730967
The Role of Neoantigens in Naturally Occurring and Therapeutically Induced Immune Responses to CancerQ38753386
MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry-based proteomicsQ38844572
A spliced antigenic peptide comprising a single spliced amino acid is produced in the proteasome by reverse splicing of a longer peptide fragment followed by trimming.Q39031562
Origin of Disagreements in Tandem Mass Spectra Interpretation by Search Engines.Q39444180
Splicing of distant peptide fragments occurs in the proteasome by transpeptidation and produces the spliced antigenic peptide derived from fibroblast growth factor-5.Q39739694
Post-Translational Peptide Splicing and T Cell ResponsesQ40083920
Immune recognition of a human renal cancer antigen through post-translational protein splicing.Q40599136
Peptide Splicing in the Proteasome Creates a Novel Type of Antigen with an Isopeptide Linkage.Q41837849
The SysteMHC Atlas projectQ41990341
Antigen presentation profiling reveals recognition of lymphoma immunoglobulin neoantigens.Q46398502
The role of mass spectrometry and proteogenomics in the advancement of HLA epitope predictionQ47190955
Neoantigen Targeting-Dawn of a New Era in Cancer Immunotherapy?Q47221163
NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity DataQ47696633
pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning.Q48049267
Analysis of the resolution limitations of peptide identification algorithmsQ49045543
An insulin-IAPP hybrid peptide is an endogenous antigen for CD4 T cells in the non-obese diabetic mouse.Q51350685
Enhanced Global Post-translational Modification Discovery with MetaMorpheus.Q53834938
A method for reducing the time required to match protein sequences with tandem mass spectraQ79163113
CharmeRT: Boosting Peptide Identifications by Chimeric Spectra Identification and Retention Time PredictionQ88971547
Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-I LigandomeQ91254308
P433issue1
P407language of work or nameEnglishQ1860
P304page(s)349-358
P577publication date2018-10-31
P1433published inJournal of Proteome ResearchQ3186939
P1476titleGlobal Identification of Post-Translationally Spliced Peptides with Neo-Fusion
P478volume18

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cites work (P2860)
Q91707889An in silico-in vitro Pipeline Identifying an HLA-A*02:01+ KRAS G12V+ Spliced Epitope Candidate for a Broad Tumor-Immune Response in Cancer Patients
Q92667291Comment on "A subset of HLA-I peptides are not genomically templated: Evidence for cis- and trans-spliced peptide ligands"
Q90749878Identification of Hybrid Insulin Peptides (HIPs) in Mouse and Human Islets by Mass Spectrometry
Q90552077MHCquant: Automated and Reproducible Data Analysis for Immunopeptidomics