scholarly article | Q13442814 |
P50 | author | Stefan K Solntsev | Q56224030 |
Brian L Frey | Q88173747 | ||
Zach Rolfs | Q88790543 | ||
P2093 | author name string | Lloyd M Smith | |
Michael R Shortreed | |||
P2860 | cites work | The PeptideAtlas project | Q25257813 |
WebLogo: A Sequence Logo Generator | Q27860646 | ||
PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry | Q28209613 | ||
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013 | Q28710185 | ||
Universal sample preparation method for proteome analysis | Q29615662 | ||
Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation | Q30002365 | ||
Application of de Novo Sequencing to Large-Scale Complex Proteomics Data Sets | Q31035849 | ||
Sequence-specific retention calculator. Algorithm for peptide retention prediction in ion-pair RP-HPLC: application to 300- and 100-A pore size C18 sorbents | Q33263558 | ||
Global Post-Translational Modification Discovery | Q33551556 | ||
The 20S proteasome splicing activity discovered by SpliceMet | Q33627497 | ||
Pathways of antigen processing | Q33631854 | ||
An antigenic peptide produced by reverse splicing and double asparagine deamidation | Q34192290 | ||
An antigenic peptide produced by peptide splicing in the proteasome | Q34303301 | ||
An antigen produced by splicing of noncontiguous peptides in the reverse order. | Q34564542 | ||
Definition of Proteasomal Peptide Splicing Rules for High-Efficiency Spliced Peptide Presentation by MHC Class I Molecules | Q35786206 | ||
Global Identification of Protein Post-translational Modifications in a Single-Pass Database Search | Q36272452 | ||
A proteomics search algorithm specifically designed for high-resolution tandem mass spectra | Q36650680 | ||
Proteasomes generate spliced epitopes by two different mechanisms and as efficiently as non-spliced epitopes | Q36769053 | ||
Pathogenic CD4 T cells in type 1 diabetes recognize epitopes formed by peptide fusion | Q36945852 | ||
Combining results of multiple search engines in proteomics | Q37160902 | ||
MHC class I-associated peptides derive from selective regions of the human genome | Q37452154 | ||
A large fraction of HLA class I ligands are proteasome-generated spliced peptides. | Q38730967 | ||
The Role of Neoantigens in Naturally Occurring and Therapeutically Induced Immune Responses to Cancer | Q38753386 | ||
MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry-based proteomics | Q38844572 | ||
A spliced antigenic peptide comprising a single spliced amino acid is produced in the proteasome by reverse splicing of a longer peptide fragment followed by trimming. | Q39031562 | ||
Origin of Disagreements in Tandem Mass Spectra Interpretation by Search Engines. | Q39444180 | ||
Splicing of distant peptide fragments occurs in the proteasome by transpeptidation and produces the spliced antigenic peptide derived from fibroblast growth factor-5. | Q39739694 | ||
Post-Translational Peptide Splicing and T Cell Responses | Q40083920 | ||
Immune recognition of a human renal cancer antigen through post-translational protein splicing. | Q40599136 | ||
Peptide Splicing in the Proteasome Creates a Novel Type of Antigen with an Isopeptide Linkage. | Q41837849 | ||
The SysteMHC Atlas project | Q41990341 | ||
Antigen presentation profiling reveals recognition of lymphoma immunoglobulin neoantigens. | Q46398502 | ||
The role of mass spectrometry and proteogenomics in the advancement of HLA epitope prediction | Q47190955 | ||
Neoantigen Targeting-Dawn of a New Era in Cancer Immunotherapy? | Q47221163 | ||
NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data | Q47696633 | ||
pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning. | Q48049267 | ||
Analysis of the resolution limitations of peptide identification algorithms | Q49045543 | ||
An insulin-IAPP hybrid peptide is an endogenous antigen for CD4 T cells in the non-obese diabetic mouse. | Q51350685 | ||
Enhanced Global Post-translational Modification Discovery with MetaMorpheus. | Q53834938 | ||
A method for reducing the time required to match protein sequences with tandem mass spectra | Q79163113 | ||
CharmeRT: Boosting Peptide Identifications by Chimeric Spectra Identification and Retention Time Prediction | Q88971547 | ||
Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-I Ligandome | Q91254308 | ||
P433 | issue | 1 | |
P407 | language of work or name | English | Q1860 |
P304 | page(s) | 349-358 | |
P577 | publication date | 2018-10-31 | |
P1433 | published in | Journal of Proteome Research | Q3186939 |
P1476 | title | Global Identification of Post-Translationally Spliced Peptides with Neo-Fusion | |
P478 | volume | 18 |
Q91707889 | An in silico-in vitro Pipeline Identifying an HLA-A*02:01+ KRAS G12V+ Spliced Epitope Candidate for a Broad Tumor-Immune Response in Cancer Patients |
Q92667291 | Comment on "A subset of HLA-I peptides are not genomically templated: Evidence for cis- and trans-spliced peptide ligands" |
Q90749878 | Identification of Hybrid Insulin Peptides (HIPs) in Mouse and Human Islets by Mass Spectrometry |
Q90552077 | MHCquant: Automated and Reproducible Data Analysis for Immunopeptidomics |