| scholarly article | Q13442814 |
| review article | Q7318358 |
| P356 | DOI | 10.1039/B819720B |
| P724 | Internet Archive ID | pubmed-PMC2898650 |
| P932 | PMC publication ID | 2898650 |
| P698 | PubMed publication ID | 19225609 |
| P5875 | ResearchGate publication ID | 24023545 |
| P50 | author | Ruth Nussinov | Q7383152 |
| Antonio del Sol | Q55875949 | ||
| Chung-Jung Tsai | Q57578576 | ||
| P2860 | cites work | Ligand-dependent dynamics and intramolecular signaling in a PDZ domain | Q24303478 |
| RAM-induced Allostery Facilitates Assembly of a Notch Pathway Active Transcription Complex | Q27650201 | ||
| Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution | Q27650851 | ||
| ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL | Q27861036 | ||
| Evolutionarily conserved networks of residues mediate allosteric communication in proteins | Q29615036 | ||
| Evolutionarily conserved pathways of energetic connectivity in protein families | Q29615037 | ||
| Comparison of Experimental Binding Data and Theoretical Models in Proteins Containing Subunits* | Q29615452 | ||
| Mechanisms of specificity in protein phosphorylation | Q29617541 | ||
| Allosteric regulation and catalysis emerge via a common route. | Q30370820 | ||
| Discovery of an allosteric site in the caspases | Q30831384 | ||
| Multiple diverse ligands binding at a single protein site: a matter of pre-existing populations | Q31034789 | ||
| Folding funnels and binding mechanisms | Q33743626 | ||
| Folding and binding cascades: dynamic landscapes and population shifts | Q33876426 | ||
| Structural determinants for affinity enhancement of a dual antagonist peptide entry inhibitor of human immunodeficiency virus type-1. | Q34064787 | ||
| Mechanistic insight into the allosteric activation of a ubiquitin-conjugating enzyme by RING-type ubiquitin ligases | Q34230579 | ||
| Cooperativity in the self-assembly of porphyrin ladders | Q34480050 | ||
| Allostery and cooperativity revisited | Q34786984 | ||
| The role of dynamics in allosteric regulation | Q35607757 | ||
| Is allostery an intrinsic property of all dynamic proteins? | Q35894622 | ||
| Principles underlying energetic coupling along an allosteric communication trajectory of a voltage-activated K+ channel | Q36288877 | ||
| Allosteric effects in the marginally stable von Hippel-Lindau tumor suppressor protein and allostery-based rescue mutant design | Q36458965 | ||
| Reassessing a sparse energetic network within a single protein domain | Q36534506 | ||
| Role of HIV Gp41 mediated fusion/hemifusion in bystander apoptosis | Q36953103 | ||
| Allostery: absence of a change in shape does not imply that allostery is not at play | Q37114191 | ||
| Dynamically driven protein allostery. | Q37376854 | ||
| Protein states and proteinquakes | Q37525131 | ||
| Dynamic coupling and allosteric behavior in a nonallosteric protein | Q39937924 | ||
| Structural insight into the mechanism of activation of the Toll receptor by the dimeric ligand Spätzle. | Q40001553 | ||
| Contact rearrangements form coupled networks from local motions in allosteric proteins | Q41003317 | ||
| Similar binding sites and different partners: implications to shared proteins in cellular pathways | Q42614421 | ||
| Monitoring aromatic picosecond to nanosecond dynamics in proteins via 13C relaxation: expanding perturbation mapping of the rigidifying core mutation, V54A, in eglin c. | Q42702623 | ||
| Mapping of two networks of residues that exhibit structural and dynamical changes upon binding in a PDZ domain protein | Q43552352 | ||
| TROSY-NMR studies of the 91kDa TRAP protein reveal allosteric control of a gene regulatory protein by ligand-altered flexibility. | Q44180429 | ||
| Structural determinants of allosteric ligand activation in RXR heterodimers. | Q44796708 | ||
| Scorpion-toxin mimics of CD4 in complex with human immunodeficiency virus gp120 crystal structures, molecular mimicry, and neutralization breadth | Q45465741 | ||
| Reconciling the "old" and "new" views of protein allostery: a molecular simulation study of chemotaxis Y protein (CheY). | Q46941745 | ||
| Coupling between global dynamics and signal transduction pathways: a mechanism of allostery for chaperonin GroEL. | Q47594992 | ||
| Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles. | Q49187978 | ||
| Co-operative interactions during protein folding. | Q52422547 | ||
| Interesting structural and dynamical behaviors exhibited by the AF-6 PDZ domain upon Bcr peptide binding. | Q55046212 | ||
| BIOCHEMISTRY: How Do Proteins Interact? | Q57078204 | ||
| Insights into Allosteric Control of Vinculin Function from Its Large Scale Conformational Dynamics | Q57829294 | ||
| The use of double mutants to detect structural changes in the active site of the tyrosyl-tRNA synthetase (Bacillus stearothermophilus) | Q61948855 | ||
| Entropy-driven cAMP-dependent Allosteric Control of Inhibitory Interactions in Exchange Proteins Directly Activated by cAMP | Q62273240 | ||
| Dynamic Allostery in the Ring Protein TRAP | Q63362546 | ||
| Strategy for analysing the co-operativity of intramolecular interactions in peptides and proteins | Q68891112 | ||
| Allostery without conformational change. A plausible model | Q70806307 | ||
| Evaluation of energetic and dynamic coupling networks in a PDZ domain protein | Q79164244 | ||
| A computational investigation of allostery in the catabolite activator protein | Q80081906 | ||
| P275 | copyright license | Creative Commons Attribution-NonCommercial | Q6936496 |
| P433 | issue | 3 | |
| P921 | main subject | signal transduction | Q828130 |
| P304 | page(s) | 207-216 | |
| P577 | publication date | 2009-01-06 | |
| 2009-03-01 | |||
| P1433 | published in | Molecular BioSystems | Q3319467 |
| P1476 | title | Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms | |
| P478 | volume | 5 |
| Q27333668 | "Fluctuograms" reveal the intermittent intra-protein communication in subtilisin Carlsberg and correlate mechanical coupling with co-evolution |
| Q45950438 | A Random Forest Model for Predicting Allosteric and Functional Sites on Proteins. |
| Q30394963 | A conserved helical capping hydrogen bond in PAS domains controls signaling kinetics in the superfamily prototype photoactive yellow protein |
| Q35079361 | A direct coupling between global and internal motions in a single domain protein? MD investigation of extreme scenarios |
| Q33701607 | A mechanistic view of the role of E3 in sumoylation |
| Q34056335 | A new concept to reveal protein dynamics based on energy dissipation |
| Q30418493 | A rigid network of long-range contacts increases thermostability in a mutant endoglucanase |
| Q31108126 | Accurate prediction of the dynamical changes within the second PDZ domain of PTP1e |
| Q35122793 | Activation and regulation of purinergic P2X receptor channels |
| Q37938945 | Advances in understanding the structure, function, and mechanism of the SCIN and Efb families of Staphylococcal immune evasion proteins |
| Q39637144 | Aligning experimental and theoretical anisotropic B-factors: water models, normal-mode analysis methods, and metrics |
| Q47579306 | Allo-network drugs: harnessing allostery in cellular networks |
| Q98178435 | Allosteric Regulation at the Crossroads of New Technologies: Multiscale Modeling, Networks, and Machine Learning |
| Q52847794 | Allosteric and Chelate Cooperativity in Divalent Crown Ether/Ammonium Complexes with Strong Binding Enhancement. |
| Q34395251 | Allosteric communication across the native and mutated KIT receptor tyrosine kinase |
| Q38134781 | Allosteric conformational barcodes direct signaling in the cell |
| Q34200056 | Allosteric inhibition of complement function by a staphylococcal immune evasion protein |
| Q30368055 | Allosteric pathway identification through network analysis: from molecular dynamics simulations to interactive 2D and 3D graphs. |
| Q33601580 | Allosteric regulation of protease activity by small molecules. |
| Q30153328 | Allosteric signalling in the outer membrane translocation domain of PapC usher. |
| Q46786473 | Allosteric sites can be identified based on the residue-residue interaction energy difference |
| Q38465098 | Allosteric therapies for lung cancer |
| Q40695140 | Allosterism in human complement component 5a ((h)C5a): a damper of C5a receptor (C5aR) signaling |
| Q37795355 | Allostery and population shift in drug discovery |
| Q37182653 | Amplification of signaling via cellular allosteric relay and protein disorder |
| Q34700484 | An introduction to NMR-based approaches for measuring protein dynamics |
| Q37683442 | Analysis of cooperativity by isothermal titration calorimetry |
| Q38869855 | Assessing cooperativity in supramolecular systems. |
| Q47265199 | Atomistic simulations and network-based modeling of the Hsp90-Cdc37 chaperone binding with Cdk4 client protein: A mechanism of chaperoning kinase clients by exploiting weak spots of intrinsically dynamic kinase domains |
| Q91889015 | Autoinhibition in Ras effectors Raf, PI3Kα, and RASSF5: a comprehensive review underscoring the challenges in pharmacological intervention |
| Q28679243 | Capturing cooperative interactions with the PSI-MI format |
| Q33578315 | Characterization of a K+-induced conformational switch in a human telomeric DNA oligonucleotide using 2-aminopurine fluorescence |
| Q43825905 | Characterization of the impact of alternative splicing on protein dynamics: the cases of glutathione S-transferase and ectodysplasin-A isoforms |
| Q37213768 | Chemical shift imprint of intersubunit communication in a symmetric homodimer |
| Q37886155 | Classification of cell signalling in tissue development |
| Q41826091 | Coevolutionary analysis enabled rational deregulation of allosteric enzyme inhibition in Corynebacterium glutamicum for lysine production |
| Q60310753 | Coevolving residues inform protein dynamics profiles and disease susceptibility of nSNVs |
| Q28482282 | Collaborative enhancement of antibody binding to distinct PECAM-1 epitopes modulates endothelial targeting |
| Q33544140 | Combinatorial libraries against libraries for selecting neoepitope activation-specific antibodies |
| Q34254998 | Comparison of tertiary structures of proteins in protein-protein complexes with unbound forms suggests prevalence of allostery in signalling proteins. |
| Q47362549 | Computational Modeling of the Hsp90 Interactions with Cochaperones and Small-Molecule Inhibitors |
| Q31036423 | Computational modeling of allosteric communication reveals organizing principles of mutation-induced signaling in ABL and EGFR kinases |
| Q30363516 | Computational modeling of allosteric regulation in the hsp90 chaperones: a statistical ensemble analysis of protein structure networks and allosteric communications. |
| Q40295980 | Conserved residues of the Pro103-Arg115 loop are involved in triggering the allosteric response of the Escherichia coli ADP-glucose pyrophosphorylase. |
| Q33639665 | Contrasting roles of dynamics in protein allostery: NMR and structural studies of CheY and the third PDZ domain from PSD-95. |
| Q33486476 | Cooperativity dominates the genomic organization of p53-response elements: a mechanistic view |
| Q30386702 | Correlated rigid modes in protein families. |
| Q48128056 | Cyclic peptide unguisin A is an anion receptor with high affinity for phosphate and pyrophosphate. |
| Q35855961 | Dancing through Life: Molecular Dynamics Simulations and Network-Centric Modeling of Allosteric Mechanisms in Hsp70 and Hsp110 Chaperone Proteins |
| Q35069132 | Decipher the mechanisms of protein conformational changes induced by nucleotide binding through free-energy landscape analysis: ATP binding to Hsp70. |
| Q27666963 | Defining an allosteric circuit in the cysteine protease domain of Clostridium difficile toxins |
| Q47994922 | Detection of Correlated Protein Backbone and Side-Chain Angle Fluctuations. |
| Q30353164 | Differential modulation of functional dynamics and allosteric interactions in the Hsp90-cochaperone complexes with p23 and Aha1: a computational study. |
| Q39664275 | Direct Investigation of Slow Correlated Dynamics in Proteins via Dipolar Interactions. |
| Q34171039 | Discovery of intramolecular signal transduction network based on a new protein dynamics model of energy dissipation |
| Q38742285 | Dissociation of a Dynamic Protein Complex Studied by All-Atom Molecular Simulations |
| Q91675504 | Does Ras Activate Raf and PI3K Allosterically? |
| Q30914370 | Dynamic allostery in the methionine repressor revealed by force distribution analysis |
| Q37899566 | Dynamic allostery: linkers are not merely flexible |
| Q34147696 | Dynamic conformational switching in the chemokine ligand is essential for G-protein-coupled receptor activation |
| Q33439363 | Dynamic hybrid materials for constitutional self-instructed membranes |
| Q34602367 | Dynamic multiprotein assemblies shape the spatial structure of cell signaling |
| Q36865927 | Dynamical network of residue-residue contacts reveals coupled allosteric effects in recognition, catalysis, and mutation |
| Q35020156 | Dynamics differentiate between active and inactive inteins |
| Q33655522 | Elucidation of the conformational free energy landscape in H.pylori LuxS and its implications to catalysis |
| Q30358225 | Emerging Computational Methods for the Rational Discovery of Allosteric Drugs. |
| Q41903530 | Energy crosstalk between DNA lesions: implications for allosteric coupling of DNA repair and triplet repeat expansion pathways |
| Q45423569 | Engineering 'cell robots' for parallel and highly sensitive screening of biomolecules under in vivo conditions |
| Q27675983 | Engineering allosteric control to an unregulated enzyme by transfer of a regulatory domain |
| Q45335193 | Ensemble-based modeling and rigidity decomposition of allosteric interaction networks and communication pathways in cyclin-dependent kinases: Differentiating kinase clients of the Hsp90-Cdc37 chaperone |
| Q27667457 | Evidence of the Participation of Remote Residues in the Catalytic Activity of Co-Type Nitrile Hydratase from Pseudomonas putida |
| Q34197530 | Expanding the proteome: disordered and alternatively folded proteins |
| Q41856020 | Exploiting conformational dynamics in drug discovery: design of C-terminal inhibitors of Hsp90 with improved activities |
| Q36938348 | Exploiting conformational ensembles in modeling protein-protein interactions on the proteome scale |
| Q30422757 | Exploiting protein flexibility to predict the location of allosteric sites |
| Q52648484 | Exploring the multiscale signaling behavior of phototropin1 from Chlamydomonas reinhardtii using a full-residue space kinetic Monte Carlo molecular dynamics technique. |
| Q42209394 | Force distribution reveals signal transduction in E. coli Hsp90. |
| Q22061730 | Fuzziness: linking regulation to protein dynamics |
| Q38266283 | G-protein-coupled receptor type A heteromers as an emerging therapeutic target. |
| Q37932011 | Gene-specific transcription activation via long-range allosteric shape-shifting |
| Q34984663 | Hot spots in a network of functional sites |
| Q37902089 | How do dynamic cellular signals travel long distances? |
| Q47587933 | How do transcription factors select specific binding sites in the genome? |
| Q38688852 | Hybrid Approaches to Structural Characterization of Conformational Ensembles of Complex Macromolecular Systems Combining NMR Residual Dipolar Couplings and Solution X-ray Scattering. |
| Q27678066 | Identification of the bile salt binding site on IpaD from Shigella flexneri and the influence of ligand binding on IpaD structure. |
| Q33529568 | Induced allostery in the directed evolution of an enantioselective Baeyer-Villiger monooxygenase |
| Q89510669 | Integrated Computational Approaches and Tools forAllosteric Drug Discovery |
| Q28479010 | Interconversion of functional motions between mesophilic and thermophilic adenylate kinases |
| Q85857386 | Investigating Molecular Mechanisms of Activation and Mutation of the HER2 Receptor Tyrosine Kinase through Computational Modeling and Simulation |
| Q49333907 | Investigation of Structural Dynamics of Enzymes and Protonation States of Substrates Using Computational Tools. |
| Q33654183 | Lysine120 interactions with p53 response elements can allosterically direct p53 organization |
| Q37675313 | Mechanisms of transcription factor selectivity |
| Q21245770 | Messing up disorder: how do missense mutations in the tumor suppressor protein APC lead to cancer? |
| Q28075348 | Metalloproteases Affecting Blood Coagulation, Fibrinolysis and Platelet Aggregation from Snake Venoms: Definition and Nomenclature of Interaction Sites |
| Q28548366 | Molecular Determinants Underlying Binding Specificities of the ABL Kinase Inhibitors: Combining Alanine Scanning of Binding Hot Spots with Network Analysis of Residue Interactions and Coevolution |
| Q39768761 | Molecular Dynamics Simulations Reveal the Mechanisms of Allosteric Activation of Hsp90 by Designed Ligands |
| Q42822469 | Molecular dynamics analysis of conserved hydrophobic and hydrophilic bond-interaction networks in ErbB family kinases |
| Q36749488 | Molecular dynamics simulation of triclinic lysozyme in a crystal lattice |
| Q37802710 | Molecular dynamics simulations of protein dynamics and their relevance to drug discovery |
| Q38163208 | Multiple conformational selection and induced fit events take place in allosteric propagation. |
| Q30387960 | Mutations in Antibody Fragments Modulate Allosteric Response Via Hydrogen-Bond Network Fluctuations |
| Q26766518 | NMR Methods to Study Dynamic Allostery |
| Q91985735 | NMR and computational methods for molecular resolution of allosteric pathways in enzyme complexes |
| Q27678569 | Neisseria meningitidisexpresses a single 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase that is inhibited primarily by phenylalanine |
| Q41768376 | Normal-mode-analysis-guided investigation of crucial intersubunit contacts in the cAMP-dependent gating in HCN channels. |
| Q38692824 | Novel technologies provide more engineering strategies for amino acid-producing microorganisms |
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| Q34681546 | Oligomerization and nanocluster organization render specificity |
| Q36070390 | Oncogenic mutations weaken the interactions that stabilize the p110α-p85α heterodimer in phosphatidylinositol 3-kinase α. |
| Q34699661 | Phosphorylation of the retinoic acid receptor alpha induces a mechanical allosteric regulation and changes in internal dynamics |
| Q51542804 | Piezoelectric allostery of protein. |
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| Q33632284 | Predicting important residues and interaction pathways in proteins using Gaussian Network Model: binding and stability of HLA proteins |
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| Q41454411 | Protein folding pathways and state transitions described by classical equations of motion of an elastic network model |
| Q37785587 | Protein functional landscapes, dynamics, allostery: a tortuous path towards a universal theoretical framework. |
| Q37616866 | Protein-protein interaction networks: how can a hub protein bind so many different partners? |
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| Q34032707 | Rbx1 flexible linker facilitates cullin-RING ligase function before neddylation and after deneddylation |
| Q62648881 | Review: Precision medicine and driver mutations: Computational methods, functional assays and conformational principles for interpreting cancer drivers |
| Q28551601 | Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery |
| Q34774526 | Scaffolds: interaction platforms for cellular signalling circuits. |
| Q42141044 | Segmental motions, not a two-state concerted switch, underlie allostery in CheY. |
| Q64939484 | Single-step multivalent capture assay for nucleic acid detection with dual-affinity regulation using mutation inhibition and allosteric activation. |
| Q37322944 | Strain analysis of protein structures and low dimensionality of mechanical allosteric couplings. |
| Q40624710 | Substrate-modulated thermal fluctuations affect long-range allosteric signaling in protein homodimers: exemplified in CAP. |
| Q27663639 | Synergistic Allostery, a Sophisticated Regulatory Network for the Control of Aromatic Amino Acid Biosynthesis in Mycobacterium tuberculosis |
| Q37082293 | Targeting a Rate-Promoting Vibration with an Allosteric Mediator in Lactate Dehydrogenase |
| Q36016095 | Targeting the cyclophilin domain of Ran-binding protein 2 (Ranbp2) with novel small molecules to control the proteostasis of STAT3, hnRNPA2B1 and M-opsin. |
| Q33659416 | Terahertz optical measurements of correlated motions with possible allosteric function |
| Q37777734 | The changing world of G protein-coupled receptors: from monomers to dimers and receptor mosaics with allosteric receptor-receptor interactions |
| Q47577552 | The different ways through which specificity works in orthosteric and allosteric drugs |
| Q31038185 | The energy landscape analysis of cancer mutations in protein kinases |
| Q26862004 | The ensemble nature of allostery |
| Q33508245 | The mechanism of ubiquitination in the cullin-RING E3 ligase machinery: conformational control of substrate orientation |
| Q37359180 | The origin of allosteric functional modulation: multiple pre-existing pathways |
| Q36721779 | The role of allostery in the ubiquitin-proteasome system |
| Q28384502 | The role of oligomerization and cooperative regulation in protein function: the case of tryptophan synthase |
| Q37891537 | The role of protein conformational fluctuations in allostery, function, and evolution. |
| Q37408300 | The spatial structure of cell signaling systems |
| Q30427743 | The underappreciated role of allostery in the cellular network. |
| Q41389114 | Transient non-native hydrogen bonds promote activation of a signaling protein |
| Q37956882 | Understanding biomolecular motion, recognition, and allostery by use of conformational ensembles. |
| Q42022888 | Using distal-site mutations and allosteric inhibition to tune, extend, and narrow the useful dynamic range of aptamer-based sensors. |
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