Expanding the proteome: disordered and alternatively folded proteins

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Expanding the proteome: disordered and alternatively folded proteins is …
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scholarly articleQ13442814

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P356DOI10.1017/S0033583511000060
P932PMC publication ID3189428
P698PubMed publication ID21729349
P5875ResearchGate publication ID51467439

P50authorH. Jane DysonQ30513249
P2860cites workShort Linear Motifs recognized by SH2, SH3 and Ser/Thr Kinase domains are conserved in disordered protein regionsQ21263144
Intrinsically Disordered Proteins in Human Diseases: Introducing the D 2 ConceptQ22061726
Intrinsically unstructured proteins and their functionsQ22061731
Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of LifeQ22061741
Intrinsic disorder explains diverse nuclear roles of chromatin remodeling proteinsQ22061745
Cdk-inhibitory activity and stability of p27Kip1 are directly regulated by oncogenic tyrosine kinasesQ24294546
Monomeric complex of human orphan estrogen related receptor-2 with DNA: a pseudo-dimer interface mediates extended half-site recognitionQ24298361
Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor transactivation domainQ24314763
Structure of factor-inhibiting hypoxia-inducible factor (HIF) reveals mechanism of oxidative modification of HIF-1 alphaQ24320267
Structural basis for recruitment of CBP/p300 by hypoxia-inducible factor-1 alphaQ24534120
Grasping at molecular interactions and genetic networks in Drosophila melanogaster using FlyNets, an Internet databaseQ24548382
Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organismsQ24548466
Identification, analysis, and prediction of protein ubiquitination sitesQ24624622
Structural diversity in p160/CREB-binding protein coactivator complexesQ82842846
Influence of flanking sequences on signaling between the activation function AF1 and DNA-binding domain of the glucocorticoid receptorQ83061141
Phosphorylation-induced transient intrinsic structure in the kinase-inducible domain of CREB facilitates its recognition by the KIX domain of CBPQ83949081
Searching DNA via a "Monkey Bar" mechanism: the significance of disordered tailsQ84976179
Smoothing molecular interactions: the "kinetic buffer" effect of intrinsically disordered proteinsQ85200800
Mapping the interactions of the p53 transactivation domain with the KIX domain of CBPQ24650130
Structural basis for p300 Taz2-p53 TAD1 binding and modulation by phosphorylationQ24653926
Cooperative regulation of p53 by modulation of ternary complex formation with CBP/p300 and HDM2Q24655602
MeDor: a metaserver for predicting protein disorderQ24658193
Residual structure, backbone dynamics, and interactions within the synuclein familyQ24671058
DisProt: the Database of Disordered ProteinsQ24675789
Polyelectrostatic interactions of disordered ligands suggest a physical basis for ultrasensitivityQ24676374
Serine/arginine-rich splicing factors belong to a class of intrinsically disordered proteinsQ25257115
Regulating highly dynamic unstructured proteins and their coding mRNAsQ27488434
Inherent flexibility in a potent inhibitor of blood coagulation, recombinant nematode anticoagulant protein c2Q27619799
Mutual synergistic folding in recruitment of CBP/p300 by p160 nuclear receptor coactivatorsQ27637572
Structural basis for Hif-1 alpha /CBP recognition in the cellular hypoxic responseQ27638869
Structure of human FIH-1 reveals a unique active site pocket and interaction sites for HIF-1 and von Hippel-LindauQ27640157
Antibody multispecificity mediated by conformational diversityQ27640592
Structural basis for negative regulation of hypoxia-inducible factor-1alpha by CITED2Q27641363
Interaction of the TAZ1 domain of the CREB-binding protein with the activation domain of CITED2: regulation by competition between intrinsically unstructured ligands for non-identical binding sitesQ27642464
Allosteric Activation of E2-RING Finger-Mediated Ubiquitylation by a Structurally Defined Specific E2-Binding Region of gp78Q27646351
Conformational Dynamics and Structural Plasticity Play Critical Roles in the Ubiquitin Recognition of a UIM DomainQ27646623
Structure of the retinoblastoma protein bound to adenovirus E1A reveals the molecular basis for viral oncoprotein inactivation of a tumor suppressorQ27648933
Structural basis for recruitment of CBP/p300 coactivators by STAT1 and STAT2 transactivation domainsQ27653760
Structural basis for subversion of cellular control mechanisms by the adenoviral E1A oncoproteinQ27656864
Structure and dynamics of NBD1 from CFTR characterized using crystallography and hydrogen/deuterium exchange mass spectrometryQ27658358
Allostery and intrinsic disorder mediate transcription regulation by conditional cooperativityQ27663130
Conformational selection in the molten globule state of the nuclear coactivator binding domain of CBPQ27663290
Structure of the p53 Transactivation Domain in Complex with the Nuclear Receptor Coactivator Binding Domain of CREB Binding ProteinQ27665216
Arginine Kinase: Joint Crystallographic and NMR RDC Analyses Link Substrate-Associated Motions to Intrinsic FlexibilityQ27665875
Three-dimensional solution structure of a single zinc finger DNA-binding domainQ27694563
Structural basis for DNA bending by the architectural transcription factor LEF-1Q27729834
Solution Structure of the KIX Domain of CBP Bound to the Transactivation Domain of CREB: A Model for Activator:Coactivator InteractionsQ27748755
Structure of the retinoblastoma tumour-suppressor pocket domain bound to a peptide from HPV E7Q27748910
High-resolution solution structure of the retinoid X receptor DNA-binding domainQ27764990
Intrinsically disordered proteinQ28191444
Intrinsic disorder in cell-signaling and cancer-associated proteinsQ28207698
Extended disordered proteins: targeting function with less scaffoldQ28208096
Plasmodium falciparum merozoite surface protein 2 is unstructured and forms amyloid-like fibrilsQ37270041
Conformational selection or induced fit: a flux description of reaction mechanismQ37310586
Thermodynamic basis for the optimization of binding-induced biomolecular switches and structure-switching biosensorsQ37310615
Colicins exploit native disorder to gain cell entry: a hitchhiker's guide to translocationQ37330470
Flexible structures and ligand interactions of tandem repeats consisting of proline, glycine, asparagine, serine, and/or threonine rich oligopeptides in proteinsQ37347477
Protein disorder is positively correlated with gene expression in Escherichia coliQ37369375
Binding of small-molecule ligands to proteins: "what you see" is not always "what you get".Q37372747
Linking folding and bindingQ37373866
Biophysical characterization of intrinsically disordered proteinsQ37375367
Large-scale analysis of thermostable, mammalian proteins provides insights into the intrinsically disordered proteomeQ37383520
Coiled-coils in type III secretion systems: structural flexibility, disorder and biological implications.Q37392278
Reconciling binding mechanisms of intrinsically disordered proteins.Q37407776
Kinetic enhancement of NF-kappaBxDNA dissociation by IkappaBalphaQ37428998
The rules of disorder or why disorder rulesQ37432471
Sending signals dynamicallyQ37440289
Multiple conformations of full-length p53 detected with single-molecule fluorescence resonance energy transferQ37469636
Intrinsic disorder in proteins associated with neurodegenerative diseasesQ37501827
Identical short peptide sequences in unrelated proteins can have different conformations: a testing ground for theories of immune recognition.Q37527235
Acetylation regulates the differentiation-specific functions of the retinoblastoma proteinQ37544561
Dynamic interactions of proteins in complex networks: a more structured view.Q37588014
Intrinsically disordered proteins and their environment: effects of strong denaturants, temperature, pH, counter ions, membranes, binding partners, osmolytes, and macromolecular crowdingQ37600691
Protein-protein interaction networks: how can a hub protein bind so many different partners?Q37616866
CFTR regulatory region interacts with NBD1 predominantly via multiple transient helicesQ37618800
Observing biological dynamics at atomic resolution using NMR.Q37619100
Protein intrinsic disorder and oligomericity in cell signalingQ37696321
Viral disorder or disordered viruses: do viral proteins possess unique features?Q37745117
Reaching biological timescales with all-atom molecular dynamics simulationsQ37799077
Angiogenic signaling aberrantly induced by tumor hypoxiaQ37825127
Mapping alpha-helical induced folding within the intrinsically disordered C-terminal domain of the measles virus nucleoprotein by site-directed spin-labeling EPR spectroscopyQ38290276
Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: determinants of affinity and sequence specificityQ38341722
Prevalent structural disorder in E. coli and S. cerevisiae proteomes.Q38517953
Amyloid-like aggregates sequester numerous metastable proteins with essential cellular functionsQ39610788
Biological regulation via ankyrin repeat foldingQ39895014
Mechanism of coupled folding and binding of an intrinsically disordered proteinQ40210194
Inferring function using patterns of native disorder in proteinsQ33295214
High-speed atomic force microscopy for observing dynamic biomolecular processesQ33300689
Modeling the accessible conformations of the intrinsically unstructured transactivation domain of p53.Q33304501
Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partnersQ33325589
Intrinsically disordered proteins display no preference for chaperone binding in vivoQ33325882
Binding-induced folding of a natively unstructured transcription factor.Q33327692
Dual coding in alternative reading frames correlates with intrinsic protein disorder.Q33348728
Protein intrinsic disorder toolbox for comparative analysis of viral proteinsQ33373579
Intrinsic disorder in protein interactions: insights from a comprehensive structural analysisQ33417626
ProtSA: a web application for calculating sequence specific protein solvent accessibilities in the unfolded ensemble.Q33428317
Development of an accurate classification system of proteins into structured and unstructured regions that uncovers novel structural domains: its application to human transcription factorsQ33436460
Insights into the regulation of intrinsically disordered proteins in the human proteome by analyzing sequence and gene expression data.Q33443462
Biophysics of Parkinson's disease: structure and aggregation of alpha-synucleinQ33470625
Exploring functional roles of multibinding protein interfacesQ33480594
The mechanism of ubiquitination in the cullin-RING E3 ligase machinery: conformational control of substrate orientationQ33508245
Intrinsic structural disorder confers cellular viability on oncogenic fusion proteinsQ33514873
Unfoldomics of human genetic diseases: illustrative examples of ordered and intrinsically disordered members of the human diseasomeQ33517783
Extensive and modular intrinsically disordered segments in C. elegans TTN-1 and implications in filament binding, elasticity and oblique striationQ33546833
The importance of being flexible: the case of basic region leucine zipper transcriptional regulatorsQ33566030
Archaic chaos: intrinsically disordered proteins in ArchaeaQ33593571
ComSin: database of protein structures in bound (complex) and unbound (single) states in relation to their intrinsic disorderQ33601021
Reduction in structural disorder and functional complexity in the thermal adaptation of prokaryotesQ33658850
Molecular dynamics reveal the essential role of linker motions in the function of cullin-RING E3 ligasesQ33665546
Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low-population states of biological macromolecules and their complexes.Q33671554
Structure of the recombinant full-length hamster prion protein PrP(29-231): the N terminus is highly flexibleQ33705415
Library of disordered patterns in 3D protein structures.Q33728497
Cryoprotective mechanism of a small intrinsically disordered dehydrin proteinQ33732719
Multitude of binding modes attainable by intrinsically disordered proteins: a portrait gallery of disorder-based complexesQ33737866
Nonnative interactions in coupled folding and binding processes of intrinsically disordered proteinsQ33747704
Conformational analysis of the partially disordered measles virus N(TAIL)-XD complex by SDSL EPR spectroscopyQ33767753
Release of long-range tertiary interactions potentiates aggregation of natively unstructured alpha-synucleinQ33817987
Phosphorylation-induced structural changes in smooth muscle myosin regulatory light chainQ33929417
Net charge per residue modulates conformational ensembles of intrinsically disordered proteinsQ33929602
Role of secondary structure in discrimination between constitutive and inducible activatorsQ33958946
Reduced amino acid alphabet is sufficient to accurately recognize intrinsically disordered protein.Q51595638
NMR characterization of long-range order in intrinsically disordered proteins.Q51695027
Low-resolution structures of transient protein-protein complexes using small-angle X-ray scattering.Q51775382
The C-terminal domain of the HIV-1 Vif protein is natively unfolded in its unbound state.Q51820176
Intrinsically disordered p53 extreme C-terminus binds to S100B(betabeta) through "fly-casting".Q51822571
Protein intrinsic disorder and human papillomaviruses: increased amount of disorder in E6 and E7 oncoproteins from high risk HPVs.Q51936092
The protein trinity--linking function and disorder.Q52055900
"Partly folded" state, a new equilibrium state of protein molecules: four-state guanidinium chloride-induced unfolding of beta-lactamase at low temperature.Q52379831
Disorder and sequence repeats in hub proteins and their implications for network evolution.Q52673882
Isoform-specific variation in the intrinsic disorder of the ecdysteroid receptor N-terminal domain.Q52696012
The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins.Q52974739
Solution NMR studies of an intrinsically unstructured protein within a dilute, 75 kDa eukaryotic protein assembly; probing the practical limits for efficiently assigning polypeptide backbone resonances.Q53650419
Assessing induced folding of an intrinsically disordered protein by site-directed spin-labeling electron paramagnetic resonance spectroscopy.Q54453977
The 'fuzzy' interactome.Q55051107
Multiple hTAF(II)31-binding motifs in the intrinsically unfolded transcriptional activation domain of VP16.Q55052108
Structural Basis for Cooperative Transcription Factor Binding to the CBP CoactivatorQ57078210
DNA-induced α-helix capping in conserved linker sequences is a determinant of binding affinity in Cys2-His2 zinc fingersQ57078232
Conformational distributions of unfolded polypeptides from novel NMR techniquesQ57080193
Residual Dipolar Couplings in Short Peptides Reveal Systematic Conformational Preferences of Individual Amino AcidsQ57080210
Local Structural Elements in the Mostly Unstructured Transcriptional Activation Domain of Human p53Q57650265
Protein interactions: is seeing believing?Q57843262
Order, Disorder, and FlexibilityQ57961420
G protein-coupled receptors show unusual patterns of intrinsic unfoldingQ57998428
Protein interactions: integration leads to beliefQ58062729
Effect of sampling on topology predictions of protein-protein interaction networksQ58067825
Thermodynamic characterization of interactions between p27Kip1 and activated and non-activated Cdk2: Intrinsically unstructured proteins as thermodynamic tethersQ58157265
Structural Characterization of the Intrinsically Unfolded Protein β-Synuclein, a Natural Negative Regulator of α-Synuclein AggregationQ58484313
The reactivity of anti-peptide antibodies is a function of the atomic mobility of sites in a proteinQ59071650
The C-terminal half of the anti-sigma factor, FlgM, becomes structured when bound to its target, σ28Q59210031
Stages in the mechanism of self-organization of protein moleculesQ69556345
Zinc-dependent structure of a single-finger domain of yeast ADR1Q70212486
Further evidence on the equilibrium "pre-molten globule state": four-state guanidinium chloride-induced unfolding of carbonic anhydrase B at low temperatureQ70918140
Predicting Disordered Regions from Amino Acid Sequence: Common Themes Despite Differing Structural CharacterizationQ73174424
Folding minimal sequences: the lower bound for sequence complexity of globular proteinsQ73327910
Macromolecular interactions: tracing the rootsQ73493196
The protein non-folding problem: amino acid determinants of intrinsic order and disorderQ73658941
Structural basis of thermostability in hyperthermophilic proteins, or "there's more than one way to skin a cat"Q73995814
The C-terminal half of the anti-sigma factor FlgM contains a dynamic equilibrium solution structure favoring helical conformationsQ74137795
Intrinsic protein disorder in complete genomesQ77145749
Role of intrinsic disorder in transient interactions of hub proteinsQ79416219
Structure of the Tfb1/p53 complex: Insights into the interaction between the p62/Tfb1 subunit of TFIIH and the activation domain of p53Q79773486
Intrinsic disorder in yeast transcriptional regulatory networkQ80353265
Probing single-molecule protein conformational dynamicsQ80392008
NMR characterization of the dynamics of biomacromoleculesQ80435130
Dynamics of well-folded and natively disordered proteins in solution: a time-of-flight neutron scattering studyQ80567696
Mechanism of induced folding: Both folding before binding and binding before folding can be realized in staphylococcal nuclease mutantsQ80660538
Helix A stabilization precedes amino-terminal lobe activation upon calcium binding to calmodulinQ81762087
Calmodulin signaling: analysis and prediction of a disorder-dependent molecular recognitionQ82627891
Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanismsQ33968222
Rbx1 flexible linker facilitates cullin-RING ligase function before neddylation and after deneddylationQ34032707
Narrowing of protein NMR spectral lines broadened by chemical exchangeQ34064443
Malleable machines take shape in eukaryotic transcriptional regulationQ34066027
Structure/function implications in a dynamic complex of the intrinsically disordered Sic1 with the Cdc4 subunit of an SCF ubiquitin ligaseQ34074606
From the Cover: Charge interactions can dominate the dimensions of intrinsically disordered proteins.Q34093140
Conformational spread as a mechanism for cooperativity in the bacterial flagellar switchQ34097033
Probing structural transitions in the intrinsically disordered C-terminal domain of the measles virus nucleoprotein by vibrational spectroscopy of cyanylated cysteinesQ34098982
The structural basis of peptide-protein binding strategies.Q34099027
Modular structure of transcription factors: implications for gene regulationQ34110705
Structural diversity in free and bound states of intrinsically disordered protein phosphatase 1 regulatorsQ34116108
Osmolyte-induced folding of an intrinsically disordered protein: folding mechanism in the absence of ligandQ34118594
Power law distribution defines structural disorder as a structural element directly linked with functionQ34135998
Catalytic and chaperone-like functions in an intrinsically disordered protein associated with desiccation toleranceQ34136216
Structure-independent analysis of the breadth of the positional distribution of disordered groups in macromolecules from order parameters for long, variable-length vectors using NMR paramagnetic relaxation enhancementQ34152575
How viruses hijack cell regulationQ34154109
Flexible Regions within IκBα Create the Ubiquitin-independent Degradation SignalQ34236735
Strategy for complete NMR assignment of disordered proteins with highly repetitive sequences based on resolution-enhanced 5D experimentsQ34252327
‘Molten‐globule state’: a compact form of globular proteins with mobile side‐chainsQ34255230
Conformational preferences of synthetic peptides derived from the immunodominant site of the circumsporozoite protein of Plasmodium falciparum by 1H NMR.Q34276542
Graded enhancement of p53 binding to CREB-binding protein (CBP) by multisite phosphorylationQ34320186
CBP/p300 TAZ1 domain forms a structured scaffold for ligand bindingQ34383065
FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfoldedQ34426417
PDZ binding to the BAR domain of PICK1 is elucidated by coarse-grained molecular dynamicsQ34432049
Secondary structure and dynamics of an intrinsically unstructured linker domainQ34439134
Induced fit, conformational selection and independent dynamic segments: an extended view of binding eventsQ34479883
An intrinsically disordered C terminus allows the La protein to assist the biogenesis of diverse noncoding RNA precursorsQ34533704
Detection of a ternary complex of NF-kappaB and IkappaBalpha with DNA provides insights into how IkappaBalpha removes NF-kappaB from transcription sitesQ34533797
The N-terminus of the intrinsically disordered protein α-synuclein triggers membrane binding and helix foldingQ34590797
Intrinsic disorder in scaffold proteins: getting more from lessQ34594105
Structure and function of PICK1.Q34600317
Verification of alternative splicing variants based on domain integrity, truncation length and intrinsic protein disorderQ34609175
Natively unstructured regions in proteins identified from contact predictionsQ34665088
Asparagine hydroxylation of the HIF transactivation domain a hypoxic switchQ28217194
Roles of phosphorylation and helix propensity in the binding of the KIX domain of CREB-binding protein by constitutive (c-Myb) and inducible (CREB) activatorsQ28219104
Cooperativity in transcription factor binding to the coactivator CREB-binding protein (CBP). The mixed lineage leukemia protein (MLL) activation domain binds to an allosteric site on the KIX domainQ28219772
A progesterone receptor co-activator (JDP2) mediates activity through interaction with residues in the carboxyl-terminal extension of the DNA binding domainQ28249810
Analysis of molecular recognition features (MoRFs)Q28260253
Regulation of hypoxia-inducible factor 1 by prolyl and asparaginyl hydroxylasesQ28271592
Ubiquitin-independent degradation of proteins by the proteasomeQ28284043
Critical scaffolding regions of the tumor suppressor Axin1 are natively unfoldedQ28298690
The WW domain: a signalling site in dystrophin?Q28306741
A novel viral oncogene with structural similarity to phospholipase CQ28307371
Structural polymorphism of 441-residue tau at single residue resolutionQ28474834
Defining the molecular basis of Arf and Hdm2 interactionsQ28507075
The importance of intrinsic disorder for protein phosphorylationQ28776125
Conformational preferences in the Ser133-phosphorylated and non-phosphorylated forms of the kinase inducible transactivation domain of CREBQ28910220
Structural studies of p21Waf1/Cip1/Sdi1 in the free and Cdk2-bound state: conformational disorder mediates binding diversityQ28910326
Peptides derived from two dynamically disordered proteins self-assemble into amyloid-like fibrilsQ28910441
A large intrinsically disordered region in SKIP and its disorder-order transition induced by PPIL1 binding revealed by NMRQ28910448
Error and attack tolerance of complex networksQ29547268
Protein disorder prediction: implications for structural proteomicsQ29615736
GlobPlot: Exploring protein sequences for globularity and disorderQ29615737
Why are "natively unfolded" proteins unstructured under physiologic conditions?Q29615739
Intrinsically unstructured proteins: re-assessing the protein structure-function paradigmQ29615865
Intrinsic disorder and protein functionQ29616415
Natively unfolded proteins: a point where biology waits for physicsQ29616416
Coupling of folding and binding for unstructured proteinsQ29616417
Sequence complexity of disordered proteinQ29616420
Structural characterization of flexible proteins using small-angle X-ray scatteringQ29617289
Funnels, pathways, and the energy landscape of protein folding: a synthesisQ29617521
Steroid receptor interactions with heat shock protein and immunophilin chaperonesQ29619628
Analysis of structured and intrinsically disordered regions of transmembrane proteinsQ30157208
Paramagnetic relaxation enhancements in unfolded proteins: theory and application to drkN SH3 domainQ30157222
Increased backbone mobility in beta-barrel enhances entropy gain driving binding of N-TIMP-1 to MMP-3.Q30164834
Conformational switch upon phosphorylation: human CDK inhibitor p19INK4d between the native and partially folded stateQ30319246
Flexible nets. The roles of intrinsic disorder in protein interaction networks.Q30351593
Length-dependent prediction of protein intrinsic disorder.Q30353929
Computational studies of protein regulation by post-translational phosphorylation.Q30375915
Protein dynamism and evolvability.Q30376087
Modularity of intrinsic disorder in the human proteome.Q30379187
Toward a quantitative theory of intrinsically disordered proteins and their functionQ30382415
Structure and Dynamics of Ribosomal Protein L12: An Ensemble Model Based on SAXS and NMR RelaxationQ40625926
Sequence determinants of compaction in intrinsically disordered proteinsQ40626286
High-resolution crystal structure of the human Notch 1 ankyrin domainQ40726164
The intermembrane space domain of Tim23 is intrinsically disordered with a distinct binding region for presequencesQ41294423
The IkappaBalpha/NF-kappaB complex has two hot spots, one at either end of the interfaceQ41492776
Spectroscopic studies of GSK3{beta} phosphorylation of the neuronal tau protein and its interaction with the N-terminal domain of apolipoprotein E.Q41771621
Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regionsQ41851853
Order within disorder: aggrecan chondroitin sulphate-attachment region provides new structural insights into protein sequences classified as disorderedQ41870328
NMR evidence for differential phosphorylation-dependent interactions in WT and DeltaF508 CFTR.Q41882930
Structural characterization of unphosphorylated STAT5a oligomerization equilibrium in solution by small-angle X-ray scattering.Q41904480
An unfolded CH1 domain controls the assembly and secretion of IgG antibodies.Q41975011
Structural characterization of the active and inactive states of Src kinase in solution by small-angle X-ray scattering.Q42030942
Stabilizing IkappaBalpha by "consensus" designQ42085776
The RelA nuclear localization signal folds upon binding to IκBα.Q42129907
Crystal structure of IRF-3 in complex with CBP.Q42152366
Modeling intrinsically disordered proteins with bayesian statisticsQ42408893
A robust approach for analyzing a heterogeneous structural ensembleQ42437093
A homeostatic model of IkappaB metabolism to control constitutive NF-kappaB activityQ42512304
Facilitated DNA search by multidomain transcription factors: cross talk via a flexible linkerQ42535577
Overlapping genes produce proteins with unusual sequence properties and offer insight into de novo protein creationQ42570606
E46K Parkinson's-linked mutation enhances C-terminal-to-N-terminal contacts in alpha-synucleinQ42672293
Susceptibility of p53 unstructured N terminus to 20 S proteasomal degradation programs the stress response.Q42680947
Detection of transient interchain interactions in the intrinsically disordered protein alpha-synuclein by NMR paramagnetic relaxation enhancementQ42703911
Proteomic studies of the intrinsically unstructured mammalian proteome.Q42834771
The role of disorder in interaction networks: a structural analysisQ42924615
Loss of post-translational modification sites in diseaseQ42927113
Polyglutamine disruption of the huntingtin exon 1 N terminus triggers a complex aggregation mechanismQ43100835
Thermodynamics reveal that helix four in the NLS of NF-kappaB p65 anchors IkappaBalpha, forming a very stable complex.Q43130560
Characterization of the regions involved in the calcium-induced folding of the intrinsically disordered RTX motifs from the bordetella pertussis adenylate cyclase toxin.Q43185587
The specificity of cross‐reactivity: Promiscuous antibody binding involves specific hydrogen bonds rather than nonspecific hydrophobic stickinessQ43205446
Increase in backbone mobility of the VTS1p-SAM domain on binding to SRE-RNA.Q43224776
Transfer of flexibility between ankyrin repeats in IkappaB* upon formation of the NF-kappaB complexQ43227326
Thermodynamic aspects of coupled binding and folding of an intrinsically disordered protein: a computational alanine scanning studyQ43247103
Characterization of intrinsically disordered proteins with electrospray ionization mass spectrometry: conformational heterogeneity of alpha-synucleinQ43256880
The nanny model for IDPs.Q43258539
Conformational changes specific for pseudophosphorylation at serine 262 selectively impair binding of tau to microtubulesQ43273610
Kinetics and thermodynamics of the interaction of 1-anilino-naphthalene-8-sulfonate with proteinsQ43291463
Structural rationale for the coupled binding and unfolding of the c-Myc oncoprotein by small moleculesQ43945988
Direct observation of structural heterogeneity in a beta-sheetQ44126837
Activation of the redox-regulated chaperone Hsp33 by domain unfolding.Q44801421
The LEF-1 high-mobility group domain undergoes a disorder-to-order transition upon formation of a complex with cognate DNA.Q44965707
The zinc-dependent redox switch domain of the chaperone Hsp33 has a novel foldQ45029981
Energetics of structural transitions of the addiction antitoxin MazE: is a programmed bacterial cell death dependent on the intrinsically flexible nature of the antitoxins?Q45285817
Alpha-synuclein structures probed by 5-fluorotryptophan fluorescence and 19F NMR spectroscopy.Q45950766
Energetics of MazG unfolding in correlation with its structural features.Q45970578
Structural characterization of the natively unfolded N-terminal domain of human c-Src kinase: insights into the role of phosphorylation of the unique domain.Q45972692
Local structural plasticity of the prion protein. Analysis of NMR relaxation dynamicsQ46074568
The cell as a collection of protein machines: preparing the next generation of molecular biologistsQ46148013
Small-molecule perturbation of competing interactions between c-Myc and Max.Q46180274
RTX calcium binding motifs are intrinsically disordered in the absence of calcium: implication for protein secretion.Q46241353
Role of backbone-solvent interactions in determining conformational equilibria of intrinsically disordered proteinsQ46594558
Reconciling observations of sequence-specific conformational propensities with the generic polymeric behavior of denatured proteinsQ46662533
Uncovering the unfoldome: enriching cell extracts for unstructured proteins by acid treatmentQ46741729
All-atom Monte Carlo approach to protein-peptide bindingQ46751333
A novel two-dimensional electrophoresis technique for the identification of intrinsically unstructured proteinsQ46751790
Rational drug design via intrinsically disordered proteinQ47193604
Alternate states of proteins revealed by detailed energy landscape mappingQ30396213
Single-stranded DNA mimicry in the p53 transactivation domain interaction with replication protein AQ30446685
Structure and kinetics of a transient antibody binding intermediate reveal a kinetic discrimination mechanism in antigen recognitionQ30476133
A high-speed atomic force microscope for studying biological macromolecules.Q30732098
NMR relaxation studies on the hydrate layer of intrinsically unstructured proteinsQ30979050
EspB from enterohaemorrhagic Escherichia coli is a natively partially folded proteinQ30981321
Residual structure in disordered peptides and unfolded proteins from multivariate analysis and ab initio simulation of Raman optical activity dataQ31122954
Biophysical characterization of the free IkappaBalpha ankyrin repeat domain in solution.Q33204174
Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomesQ33252616
Prediction of amyloidogenic and disordered regions in protein chainsQ33267899
Energetic determinants of protein binding specificity: insights into protein interaction networksQ47590562
Intrinsic disorder in pathogenic and non-pathogenic microbes: discovering and analyzing the unfoldomes of early-branching eukaryotesQ47702038
Protein disorder and the evolution of molecular recognition: theory, predictions and observationsQ47715145
Thousands of proteins likely to have long disordered regions.Q47715178
Use of protonless NMR spectroscopy to alleviate the loss of information resulting from exchange-broadening.Q47830265
Multiple independent binding sites for small-molecule inhibitors on the oncoprotein c-Myc.Q47830329
Sequence similarity of phospholipase C with the non-catalytic region of src.Q48099424
Coupled folding and binding with alpha-helix-forming molecular recognition elementsQ48122045
Evolutionary rate heterogeneity in proteins with long disordered regions.Q48626135
Biochemistry. An ensemble view of allostery.Q50334078
Fuzzy complexes: polymorphism and structural disorder in protein-protein interactionsQ34720702
Sticking together? Falling apart? Exploring the dynamics of the interactomeQ34771682
Tight regulation of unstructured proteins: from transcript synthesis to protein degradationQ34890013
The client protein p53 adopts a molten globule-like state in the presence of Hsp90.Q34928219
Phosphorylated intrinsically disordered region of FACT masks its nucleosomal DNA binding elementsQ34992426
Cell regulation: determined to signal discrete cooperationQ35002154
Synergistic interplay between promoter recognition and CBP/p300 coactivator recruitment by FOXO3aQ35007540
Speeding molecular recognition by using the folding funnel: the fly-casting mechanismQ35189399
Molecular mechanisms of amyloidosisQ35194628
Regions of IkappaBalpha that are critical for its inhibition of NF-kappaB.DNA interaction fold upon binding to NF-kappaBQ35539707
The intrinsically disordered cytoplasmic domain of the T cell receptor zeta chain binds to the nef protein of simian immunodeficiency virus without a disorder-to-order transitionQ35580612
Sequence-specific solvent accessibilities of protein residues in unfolded protein ensembles.Q35606668
The role of structural disorder in the function of RNA and protein chaperonesQ35850848
Unfolded proteins and protein folding studied by NMR.Q35860163
Macromolecular crowding in biological systems: hydrodynamics and NMR methods.Q35884786
Natively disordered proteins: functions and predictionsQ36031548
Dynamical binding of proline-rich peptides to their recognition domainsQ36276155
What drives proteins into the major or minor grooves of DNA?Q36630637
Towards proteomic approaches for the identification of structural disorderQ36789770
NACP, a protein implicated in Alzheimer's disease and learning, is natively unfoldedQ36830682
Conservation of intrinsic disorder in protein domains and families: II. functions of conserved disorderQ36869604
Tailoring relaxation dispersion experiments for fast-associating protein complexesQ36871716
Characterization of molecular recognition features, MoRFs, and their binding partnersQ36944291
Principles of flexible protein-protein dockingQ36952164
Intrinsically unstructured domains of Arf and Hdm2 form bimolecular oligomeric structures in vitro and in vivoQ37032577
The effects of conformational heterogeneity on the binding of the Notch intracellular domain to effector proteins: a case of biologically tuned disorderQ37117911
Interplay of alpha-synuclein binding and conformational switching probed by single-molecule fluorescence.Q37153744
TOP-IDP-scale: a new amino acid scale measuring propensity for intrinsic disorderQ37178764
CDF it all: consensus prediction of intrinsically disordered proteins based on various cumulative distribution functionsQ37195737
Chemical and biological folding contribute to temperature-sensitive DeltaF508 CFTR traffickingQ37196094
Prediction of the rotational tumbling time for proteins with disordered segmentsQ37223434
Protein intrinsic disorder and influenza virulence: the 1918 H1N1 and H5N1 virusesQ37241586
Amino acid repeats and the structure and evolution of proteinsQ37254903
P433issue4
P921main subjectprotein foldingQ847556
P304page(s)467-518
P577publication date2011-07-01
P1433published inQuarterly Reviews of BiophysicsQ2361372
P1476titleExpanding the proteome: disordered and alternatively folded proteins
P478volume44

Reverse relations

cites work (P2860)
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