A large intrinsically disordered region in SKIP and its disorder-order transition induced by PPIL1 binding revealed by NMR

scientific journal article

A large intrinsically disordered region in SKIP and its disorder-order transition induced by PPIL1 binding revealed by NMR is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1074/JBC.M109.087528
P932PMC publication ID2836099
P698PubMed publication ID20007319

P50authorChao XuQ45931211
Jiahai ZhangQ88128558
Yunyu ShiQ89243547
P2093author name stringJihui Wu
Shaojie Zhang
Xingsheng Wang
Zhijun Liu
Weiwei Wang
Xiaojuan Huang
P2860cites workCLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
The product of an oculopharyngeal muscular dystrophy gene, poly(A)-binding protein 2, interacts with SKIP and stimulates muscle-specific gene expressionQ24291254
A subset of human 35S U5 proteins, including Prp19, function prior to catalytic step 1 of splicingQ24294927
Composition and three-dimensional EM structure of double affinity-purified, human prespliceosomal A complexesQ24298731
A human splicing factor, SKIP, associates with P-TEFb and enhances transcription elongation by HIV-1 Tat.Q24302596
Nuclear coactivator-62 kDa/Ski-interacting protein is a nuclear matrix-associated coactivator that may couple vitamin D receptor-mediated transcription and RNA splicingQ24306801
How to study proteins by circular dichroismQ36199360
Functional integration of transcriptional and RNA processing machineriesQ37147522
Spliceosomal immunophilinsQ37187968
Protein composition and electron microscopy structure of affinity-purified human spliceosomal B complexes isolated under physiological conditionsQ38406412
SKIP modifies gene expression by affecting both transcription and splicingQ42458544
Sequence-dependent correction of random coil NMR chemical shiftsQ43677693
Thousands of proteins likely to have long disordered regions.Q47715178
The fission yeast ortholog of the coregulator SKIP interacts with the small subunit of U2AF.Q48358486
Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome.Q50336089
Isolation of an active step I spliceosome and composition of its RNP core.Q50336090
Repositioning of the reaction intermediate within the catalytic center of the spliceosome.Q52568800
Circular dichroic analysis of denatured proteins: inclusion of denatured proteins in the reference setQ72631364
Modification of the megaprimer method of PCR mutagenesis: improved amplification of the final productQ72960146
Improved 3D triple resonance experiments, HNN and HN(C)N, for HN and 15N sequential correlations in (13C, 15N) labeled proteins: application to unfolded proteinsQ74336868
Dissecting protein-protein recognition sitesQ77926233
Solution structure of YKR049C, a putative redox protein from Saccharomyces cerevisiaeQ81304479
Isolation and characterization of a novel coactivator protein, NCoA-62, involved in vitamin D-mediated transcriptionQ24308724
The Ski oncoprotein interacts with Skip, the human homolog of Drosophila Bx42Q24311912
Regulation of cyclin D1 RNA stability by SNIP1Q24312714
Solution structure of human peptidyl prolyl isomerase-like protein 1 and insights into its interaction with SKIPQ24314428
A serine/arginine-rich nuclear matrix cyclophilin interacts with the C-terminal domain of RNA polymerase IIQ24322515
Purification and biochemical characterization of interchromatin granule clustersQ24534297
A cyclophilin functions in pre-mRNA splicingQ24536168
Using circular dichroism spectra to estimate protein secondary structureQ24650518
Serine/arginine-rich splicing factors belong to a class of intrinsically disordered proteinsQ25257115
Crystallography & NMR System: A New Software Suite for Macromolecular Structure DeterminationQ26778405
Crystal structure of a complex between human spliceosomal cyclophilin H and a U4/U6 snRNP-60K peptideQ27641709
Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxationQ27860508
The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift dataQ27860592
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANAQ27860611
Refinement of protein structures in explicit solventQ27860639
ESPript: analysis of multiple sequence alignments in PostScriptQ27860708
NMRPipe: a multidimensional spectral processing system based on UNIX pipesQ27860859
Mechanical devices of the spliceosome: motors, clocks, springs, and thingsQ27938081
The Prp19p-associated complex in spliceosome activationQ27938109
Identification and characterization of Prp45p and Prp46p, essential pre-mRNA splicing factorsQ27939548
The spliceosome: design principles of a dynamic RNP machineQ28131809
Integrating mRNA processing with transcriptionQ28610124
Pre-mRNA splicing: awash in a sea of proteinsQ29547272
Backbone dynamics of proteins as studied by 15N inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nucleaseQ29547582
Random coil chemical shifts in acidic 8 M urea: implementation of random coil shift data in NMRViewQ30619296
Cyclophilins of a novel subfamily interact with SNW/SKIP coregulator in Dictyostelium discoideum and Schizosaccharomyces pombeQ31028339
ProFace: a server for the analysis of the physicochemical features of protein-protein interfacesQ33246033
Structure of the recombinant full-length hamster prion protein PrP(29-231): the N terminus is highly flexibleQ33705415
Molecular analysis of Saccharomyces cerevisiae chromosome I: identification of additional transcribed regions and demonstration that some encode essential functionsQ33957557
Transcriptional coregulator SNW/SKIP: the concealed tie of dissimilar pathwaysQ35723601
Emerging insights into the coactivator role of NCoA62/SKIP in Vitamin D-mediated transcriptionQ35822250
P433issue7
P407language of work or nameEnglishQ1860
P921main subjectPeptidylprolyl isomerase like 1Q21106962
SNW domain containing 1Q21114222
disordered domain specific bindingQ27123456
P304page(s)4951–4963
P577publication date2010-02-12
P1433published inJournal of Biological ChemistryQ867727
P1476titleA large intrinsically disordered region in SKIP and its disorder-order transition induced by PPIL1 binding revealed by NMR
P478volume285

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cites work (P2860)
Q36681464Allosteric modulators of steroid hormone receptors: structural dynamics and gene regulation
Q41599367Cryo-EM structure of a human spliceosome activated for step 2 of splicing
Q30633989DISOPRED3: precise disordered region predictions with annotated protein-binding activity
Q34197530Expanding the proteome: disordered and alternatively folded proteins
Q26829060From Drosophila to humans: reflections on the roles of the prolyl isomerases and chaperones, cyclophilins, in cell function and disease
Q35814729Integrative Genomics-Based Discovery of Novel Regulators of the Innate Antiviral Response
Q37770082Molecular aspects of cyclophilins mediating therapeutic actions of their ligands
Q37891686Novel strategies for drug discovery based on Intrinsically Disordered Proteins (IDPs)
Q39167481Rice cyclophilin OsCYP18-2 is translocated to the nucleus by an interaction with SKIP and enhances drought tolerance in rice and Arabidopsis
Q35834035Roles of Prolyl Isomerases in RNA-Mediated Gene Expression
Q35110852Sequence complexity of amyloidogenic regions in intrinsically disordered human proteins
Q34624640Sparsely sampled high-resolution 4-D experiments for efficient backbone resonance assignment of disordered proteins
Q60917803Structural and Functional Insights into Human Nuclear Cyclophilins
Q41790611Structural and functional characterization of the N terminus of Schizosaccharomyces pombe Cwf10.
Q27696314Structure and evolution of the spliceosomal peptidyl-prolyl cis-trans isomerase Cwc27
Q24305898The crystal structure of PPIL1 bound to cyclosporine A suggests a binding mode for a linear epitope of the SKIP protein
Q35218927The spliceosomal PRP19 complex of trypanosomes
Q43208870The spliceosomal proteins PPIH and PRPF4 exhibit bi-partite binding

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