Roles of Prolyl Isomerases in RNA-Mediated Gene Expression

scientific article published on 18 May 2015

Roles of Prolyl Isomerases in RNA-Mediated Gene Expression is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

External links are
P356DOI10.3390/BIOM5020974
P932PMC publication ID4496705
P698PubMed publication ID25992900
P5875ResearchGate publication ID275953360

P2093author name stringRoopa Thapar
P2860cites workU box proteins as a new family of ubiquitin-protein ligasesQ24291397
The DNA binding parvulin Par17 is targeted to the mitochondrial matrix by a recently evolved prepeptide uniquely present in HominidaeQ24293963
Hsp90 cochaperones p23 and FKBP4 physically interact with hAgo2 and activate RNA interference-mediated silencing in mammalian cellsQ24294644
The N-terminal basic domain of human parvulin hPar14 is responsible for the entry to the nucleus and high-affinity DNA-bindingQ24302291
CDK12 is a transcription elongation-associated CTD kinase, the metazoan ortholog of yeast Ctk1Q24303611
Cell surface expression of CD147/EMMPRIN is regulated by cyclophilin 60Q24305042
The crystal structure of PPIL1 bound to cyclosporine A suggests a binding mode for a linear epitope of the SKIP proteinQ24305898
Dynamic protein-protein interaction wiring of the human spliceosomeQ24306136
The 20kD protein of human [U4/U6.U5] tri-snRNPs is a novel cyclophilin that forms a complex with the U4/U6-specific 60kD and 90kD proteinsQ24312016
A Pin1/mutant p53 axis promotes aggressiveness in breast cancerQ24312083
The peptidyl-prolyl isomerase Pin1 regulates the stability of granulocyte-macrophage colony-stimulating factor mRNA in activated eosinophils.Q52034778
The peptidyl-prolyl isomerase Pin1 regulates granulocyte-macrophage colony-stimulating factor mRNA stability in T lymphocytes.Q53590097
The immunosuppressant FK506 selectively inhibits expression of early T cell activation genesQ69079614
Pinning down transcription: regulation of RNA polymerase II activity during the cell cycleQ75320782
A universal RNA polymerase II CTD cycle is orchestrated by complex interplays between kinase, phosphatase, and isomerase enzymes along genesQ83344227
Transcriptional coregulator SNW/SKIP: the concealed tie of dissimilar pathwaysQ35723601
A structural perspective of CTD functionQ36167411
Pin1 regulates TGF-beta1 production by activated human and murine eosinophils and contributes to allergic lung fibrosisQ36330861
Targeting carcinogenesis: a role for the prolyl isomerase Pin1?Q36465488
Identification of RNA targets for the nuclear multidomain cyclophilin atCyp59 and their effect on PPIase activity.Q36580971
Pinning down signaling in the immune system: the role of the peptidyl-prolyl isomerase Pin1 in immune cell functionQ37093918
Chromatin structure and the inheritance of epigenetic informationQ37141498
The co-chaperones Fkbp4/5 control Argonaute2 expression and facilitate RISC assemblyQ37365349
The prolyl isomerase pin1 regulates mRNA levels of genes with short half-lives by targeting specific RNA binding proteinsQ37458768
Modeling breast cancer in vivo and ex vivo reveals an essential role of Pin1 in tumorigenesisQ37485770
Prolyl-isomerase Pin1 controls normal and cancer stem cells of the breast.Q37606424
"Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactionsQ37620941
The role of KSRP in mRNA decay and microRNA precursor maturationQ37936370
Functional diversity and pharmacological profiles of the FKBPs and their complexes with small natural ligandsQ38065993
Hsp90-binding immunophilins as a potential new platform for drug treatmentQ38097870
Interpreting the language of histone and DNA modificationsQ38196193
Emerging mechanisms of mRNP remodeling regulationQ38219824
The role of immunophilins in viral infectionQ38274889
AtCyp59 is a multidomain cyclophilin from Arabidopsis thaliana that interacts with SR proteins and the C-terminal domain of the RNA polymerase II.Q38315524
Pin1 dysregulation helps to explain the inverse association between cancer and Alzheimer's diseaseQ38316418
Peptidyl-prolyl isomerases: a full cast of critical actors in cardiovascular diseases.Q38370240
Pin1: Intimate involvement with the regulatory protein kinase networks in the global phosphorylation landscapeQ38376214
Targeting the chemotactic function of CD147 reduces collagen-induced arthritisQ38961065
Rapamycin-binding FKBP25 associates with diverse proteins that form large intracellular entitiesQ38977720
Pin1 modulates RNA polymerase II activity during the transcription cycleQ39258906
Alzheimer's disease-related loss of Pin1 function influences the intracellular localization and the processing of AβPP.Q39376827
Cyclophilin, a primary molecular target for cyclosporine. Structural and functional implicationsQ39516228
The peptidyl-prolyl isomerase Pin1 determines parathyroid hormone mRNA levels and stability in rat models of secondary hyperparathyroidism.Q39796772
Pin1 modulates the structure and function of human RNA polymerase II.Q40266169
Consideration of the possibility that the slow step in protein denaturation reactions is due to cis-trans isomerism of proline residuesQ40346399
Regulation of Raf-1 by direct feedback phosphorylation.Q40467820
Binding of a putative and a known chaperone protein revealed by immunogold labeling transmission electron microscopy: A suggested use of chaperones as probes for the distribution of their target proteins.Q40917262
The actions of cyclosporin A and FK506 suggest a novel step in the activation of T lymphocytes.Q41238756
Functional interaction of the Ess1 prolyl isomerase with components of the RNA polymerase II initiation and termination machineriesQ41837167
Interdomain interactions support interdomain communication in human Pin1Q42126679
Pin1-based diagnostic and therapeutic strategies for breast cancerQ42470945
Pin1 regulates parathyroid hormone mRNA stabilityQ42566449
PTF1 encodes an essential protein in Saccharomyces cerevisiae, which shows strong homology with a new putative family of PPIasesQ42686220
Flipping MLL1's switch one proline at a timeQ42984901
The prolyl isomerase Pin1 is a regulator of p53 in genotoxic response.Q44192183
The prolyl isomerase Pin1 is a novel prognostic marker in human prostate cancer.Q44618217
Nuclear association of a T-cell transcription factor blocked by FK-506 and cyclosporin AQ46979889
Peptide binding induces large scale changes in inter-domain mobility in human Pin1.Q47986427
The cyclophilin inhibitor Debio 025 combined with PEG IFNalpha2a significantly reduces viral load in treatment-naïve hepatitis C patients.Q48033815
The significance of Pin1 in the development of Alzheimer's diseaseQ48241525
Human CyP33 binds specifically to mRNA and binding stimulates PPIase activity of hCyP33.Q50320372
Isolation of an active step I spliceosome and composition of its RNP coreQ50336090
Solution structure of human peptidyl prolyl isomerase-like protein 1 and insights into its interaction with SKIPQ24314428
Parvulin (Par14), a peptidyl-prolyl cis-trans isomerase, is a novel rRNA processing factor that evolved in the metazoan lineageQ24315973
Pro isomerization in MLL1 PHD3-bromo cassette connects H3K4me readout to CyP33 and HDAC-mediated repressionQ24319024
A serine/arginine-rich nuclear matrix cyclophilin interacts with the C-terminal domain of RNA polymerase IIQ24322515
Pin1 is overexpressed in breast cancer and cooperates with Ras signaling in increasing the transcriptional activity of c-Jun towards cyclin D1.Q24535558
The FK506-binding protein 25 functionally associates with histone deacetylases and with transcription factor YY1.Q24535726
A cyclophilin functions in pre-mRNA splicingQ24536168
Combined top-down and bottom-up proteomics identifies a phosphorylation site in stem-loop-binding proteins that contributes to high-affinity RNA bindingQ24541504
Two protein-protein interaction sites on the spliceosome-associated human cyclophilin CypHQ24670824
Prolyl isomerase Pin1 as a molecular switch to determine the fate of phosphoproteinsQ26825421
Prolyl isomerase Pin1 in cancerQ27024695
Crystal structure of the human U4/U6 small nuclear ribonucleoprotein particle-specific SnuCyp-20, a nuclear cyclophilinQ27621706
NMR solution structure of hPar14 reveals similarity to the peptidyl prolyl cis/trans isomerase domain of the mitotic regulator hPin1 but indicates a different functionality of the proteinQ27626801
Solution structure of the human parvulin-like peptidyl prolyl cis/trans isomerase, hPar14Q27629310
Crystal structure of a complex between human spliceosomal cyclophilin H and a U4/U6 snRNP-60K peptideQ27641709
Structural Basis for High-Affinity Peptide Inhibition of Human Pin1Q27644848
The crystal structure of human WD40 repeat-containing peptidylprolyl isomerase (PPWD1)Q27650272
Solution structure of the parvulin-type PPIase domain of Staphylococcus aureus PrsA – Implications for the catalytic mechanism of parvulinsQ27654271
Structure-based design of novel human Pin1 inhibitors (I)Q27657296
Structure-based design of novel human Pin1 inhibitors (II)Q27660130
Molecular Mechanism of MLL PHD3 and RNA Recognition by the Cyp33 RRM DomainQ27661492
The PHD3 Domain of MLL Acts as a CYP33-Regulated Switch between MLL-Mediated Activation and Repression,Q27663805
Discovery of cell-active phenyl-imidazole Pin1 inhibitors by structure-guided fragment evolutionQ27664950
cis -Proline-mediated Ser(P) 5 Dephosphorylation by the RNA Polymerase II C-terminal Domain Phosphatase Ssu72Q27666319
Structural characterization of the PPIase domain of FKBP51, a cochaperone of human Hsp90Q27668151
Crystallographic proof for an extended hydrogen-bonding network in small prolyl isomerasesQ27675563
Interaction of the Histone mRNA Hairpin with Stem–Loop Binding Protein (SLBP) and Regulation of the SLBP–RNA Complex by Phosphorylation and Proline IsomerizationQ27678159
Structural and Kinetic Analysis of Prolyl-isomerization/Phosphorylation Cross-Talk in the CTD CodeQ27679514
Structural and functional analysis of the mitotic rotamase Pin1 suggests substrate recognition is phosphorylation dependentQ27739821
Bur1 kinase is required for efficient transcription elongation by RNA polymerase II.Q27930313
The Ess1 prolyl isomerase is required for transcription termination of small noncoding RNAs via the Nrd1 pathwayQ27931668
The FK506-binding protein, Fpr4, is an acidic histone chaperoneQ27932377
The Ess1 prolyl isomerase is linked to chromatin remodeling complexes and the general transcription machineryQ27932954
Proline isomerization of histone H3 regulates lysine methylation and gene expressionQ27933713
Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5' transcribed regionsQ27936392
Ssu72 Is an RNA polymerase II CTD phosphataseQ27936648
Mutations in a peptidylprolyl-cis/trans-isomerase gene lead to a defect in 3'-end formation of a pre-mRNA in Saccharomyces cerevisiaeQ27938389
Phospho-carboxyl-terminal domain binding and the role of a prolyl isomerase in pre-mRNA 3'-End formationQ27938452
A human peptidyl-prolyl isomerase essential for regulation of mitosisQ28117639
Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcriptionQ28131686
The spliceosome: design principles of a dynamic RNP machineQ28131809
Phosphorylation of the N-terminal domain regulates subcellular localization and DNA binding properties of the peptidyl-prolyl cis/trans isomerase hPar14Q28187175
Comprehensive proteomic analysis of the human spliceosomeQ28201545
Molecular cloning and characterization of a novel peptidylprolyl isomerase (cyclophilin)-like gene (PPIL3) from human fetal brainQ28204559
Isolation and proteomic characterization of human Parvulin-associating preribosomal ribonucleoprotein complexesQ28215155
Structure of recombinant human cyclophilin J, a novel member of the cyclophilin familyQ28237097
Functional aspects of extracellular cyclophilinsQ28237777
1.88 A crystal structure of the C domain of hCyP33: a novel domain of peptidyl-prolyl cis-trans isomeraseQ28257244
The prolyl isomerase Pin1 targets stem-loop binding protein (SLBP) to dissociate the SLBP-histone mRNA complex linking histone mRNA decay with SLBP ubiquitinationQ28273385
Upstream and downstream of mTORQ28277365
Calcineurin is a common target of cyclophilin-cyclosporin A and FKBP-FK506 complexesQ28277749
RS cyclophilins: identification of an NK-TR1-related cyclophilinQ28299895
A nuclear RNA-binding cyclophilin in human T cellsQ28300122
Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domainQ28343959
A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencingQ28511456
Matrin CYP, an SR-rich cyclophilin that associates with the nuclear matrix and splicing factorsQ28577033
Prolyl isomerase Pin1 regulates neuronal differentiation via β-cateninQ28586339
A large intrinsically disordered region in SKIP and its disorder-order transition induced by PPIL1 binding revealed by NMRQ28910448
An extensive network of coupling among gene expression machinesQ29547273
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activityQ29555842
RNA polymerase II and the integration of nuclear eventsQ29614772
From birth to death: the complex lives of eukaryotic mRNAsQ29615021
Cyclophilin: a specific cytosolic binding protein for cyclosporin AQ29620548
Multidomain Peptidyl Prolyl cis/trans IsomerasesQ30316949
On the benefit of bivalency in peptide ligand/pin1 interactionsQ30319749
Insights into the catalytic mechanism of peptidyl prolyl cis/trans isomerasesQ30320453
Pin1 and Par14 peptidyl prolyl isomerase inhibitors block cell proliferationQ30885629
A genome wide analysis of ubiquitin ligases in APP processing identifies a novel regulator of BACE1 mRNA levelsQ33257770
The loss of PIN1 deregulates cyclin E and sensitizes mouse embryo fibroblasts to genomic instabilityQ33292394
KSRP-PMR1-exosome association determines parathyroid hormone mRNA levels and stability in transfected cellsQ33506175
The Ess1 prolyl isomerase: traffic cop of the RNA polymerase II transcription cycleQ33726010
DSIF and RNA Polymerase II CTD Phosphorylation Coordinate the Recruitment of Rpd3S to Actively Transcribed GenesQ33742112
Extracellular cyclophilins contribute to the regulation of inflammatory responsesQ33821920
Identification of eukaryotic parvulin homologues: a new subfamily of peptidylprolyl cis-trans isomerasesQ33864532
Two distinct signal transmission pathways in T lymphocytes are inhibited by complexes formed between an immunophilin and either FK506 or rapamycinQ33911404
The prolyl isomerase, FKBP25, interacts with RNA-engaged nucleolin and the pre-60S ribosomal subunit.Q33967912
Phosphorylated Pol II CTD Recruits Multiple HDACs, Including Rpd3C(S), for Methylation-Dependent Deacetylation of ORF NucleosomesQ34118607
3D structure of human FK506-binding protein 52: implications for the assembly of the glucocorticoid receptor/Hsp90/immunophilin heterocomplexQ34375305
Hyperphosphorylation of the C-terminal repeat domain of RNA polymerase II facilitates dissociation of its complex with mediatorQ34610960
Pin1 regulates the dynamics of c-Myc DNA binding to facilitate target gene regulation and oncogenesisQ34743616
Pin1 inhibitors: Pitfalls, progress and cellular pharmacologyQ34782041
Immunity, microbial pathogenesis, and immunophilins: finding the keys, now where are the locks?Q35174939
The spliceosomal PRP19 complex of trypanosomesQ35218927
Prolyl isomerases in gene transcriptionQ35561852
P275copyright licenseCreative Commons AttributionQ6905323
P6216copyright statuscopyrightedQ50423863
P433issue2
P921main subjectenzymeQ8047
regulation of gene expressionQ411391
post-transcriptional modificationQ417379
P304page(s)974-999
P577publication date2015-05-18
P1433published inBiomoleculesQ23929963
P1476titleRoles of Prolyl Isomerases in RNA-Mediated Gene Expression
P478volume5

Reverse relations

cites work (P2860)
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Q93088770Enzyme activity and structural features of three single-domain phloem cyclophilins from Brassica napus
Q48123961Evolutionary analysis of polyproline motifs in Escherichia coli reveals their regulatory role in translation
Q35959194Mycobacterium tuberculosis Peptidyl-Prolyl Isomerases Also Exhibit Chaperone like Activity In-Vitro and In-Vivo
Q64072057Pleiotropic Cyclophilin PpiB Controls Cysteine-Tolerance, Toxin Production, the Central Metabolism and Multiple Stress Responses
Q91975825Prolyl Isomerase Pin1 in Human Cancer: Function, Mechanism, and Significance
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