Intrinsically Disordered Proteins in Human Diseases: Introducing the D 2 Concept

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Intrinsically Disordered Proteins in Human Diseases: Introducing the D 2 Concept is …
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scholarly articleQ13442814
review articleQ7318358

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P356DOI10.1146/ANNUREV.BIOPHYS.37.032807.125924
P8608Fatcat IDrelease_q5j5e4t3jffxtoaujbx54fau2u
P3181OpenCitations bibliographic resource ID2663423
P698PubMed publication ID18573080
P5875ResearchGate publication ID5283541

P50authorVladimir N. UverskyQ59698496
P2093author name stringA. Keith Dunker
Christopher J. Oldfield
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectbiophysicsQ7100
cell biologyQ7141
bioengineeringQ580689
structural biologyQ908902
P304page(s)215-246
P577publication date2008-06-01
P1433published inAnnual Review of BiophysicsQ4034062
P1476titleIntrinsically Disordered Proteins in Human Diseases: Introducing the D 2 Concept
P478volume37

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Q36320524Protein folding and the order/disorder paradox
Q30399457Protein folding at single-molecule resolution
Q38898708Protein function in precision medicine: deep understanding with machine learning
Q37950254Protein intrinsic disorder as a flexible armor and a weapon of HIV-1.
Q45326031Protein structural disorder of the envelope V3 loop contributes to the switch in human immunodeficiency virus type 1 cell tropism
Q37862224Protein-protein interactions: principles, techniques, and their potential role in new drug development
Q38257180Proteins without unique 3D structures: biotechnological applications of intrinsically unstable/disordered proteins
Q42673758Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?
Q36926540Proteome-wide discovery of evolutionary conserved sequences in disordered regions
Q26777933Proteomics in Traditional Chinese Medicine with an Emphasis on Alzheimer's Disease
Q30400560Proteus: a random forest classifier to predict disorder-to-order transitioning binding regions in intrinsically disordered proteins
Q64121543Quality and bias of protein disorder predictors
Q24289194Rapid evolutionary dynamics of structural disorder as a potential driving force for biological divergence in flaviviruses
Q35961236Rational design of antibodies targeting specific epitopes within intrinsically disordered proteins
Q64945196Recent Advances in Computational Protocols Addressing Intrinsically Disordered Proteins.
Q30387256Reciprocal regulation of metabolic and signaling pathways
Q36100558Reciprocal transcriptional regulation of metabolic and signaling pathways correlates with disease severity in heart failure
Q34130185Residual structures, conformational fluctuations, and electrostatic interactions in the synergistic folding of two intrinsically disordered proteins
Q90715216Residue-Specific Force Field Improving the Sample of Intrinsically Disordered Proteins and Folded Proteins
Q43163854Residue-Specific Interactions of an Intrinsically Disordered Protein with Silica Nanoparticles and their Quantitative Prediction.
Q30542695Resilience of death: intrinsic disorder in proteins involved in the programmed cell death
Q35746730Revealing the Mechanisms of Protein Disorder and N-Glycosylation in CD44-Hyaluronan Binding Using Molecular Simulation
Q33700525Role of Hsp70 ATPase domain intrinsic dynamics and sequence evolution in enabling its functional interactions with NEFs
Q37922607Role of metal ions in aggregation of intrinsically disordered proteins in neurodegenerative diseases
Q37150520SIRT1 is a Highly Networked Protein That Mediates the Adaptation to Chronic Physiological Stress.
Q24620741SPINE-D: accurate prediction of short and long disordered regions by a single neural-network based method
Q90337998SPOT-Disorder2: Improved Protein Intrinsic Disorder Prediction by Ensembled Deep Learning
Q24658445Scale-free flow of life: on the biology, economics, and physics of the cell
Q92631742Sequence Effects on Size, Shape, and Structural Heterogeneity in Intrinsically Disordered Proteins
Q91708289Sequence-Derived Markers of Drug Targets and Potentially Druggable Human Proteins
Q33997189Sequencing of DISC1 pathway genes reveals increased burden of rare missense variants in schizophrenia patients from a northern Swedish population.
Q39235911Shaping proteostasis at the cellular, tissue, and organismal level
Q26999437Shedding light on protein folding, structural and functional dynamics by single molecule studies
Q44840918Simulation studies on the stabilities of aggregates formed by fibril-forming segments of alpha-Synuclein
Q34250768Single molecule characterization of α-synuclein in aggregation-prone states
Q56890280Single-molecule force spectroscopy of rapidly fluctuating, marginally stable structures in the intrinsically disordered protein α-synuclein
Q46791997Single-molecule spectroscopy of the unexpected collapse of an unfolded protein at low pH.
Q90316911Sjögren syndrome/scleroderma autoantigen 1 is a direct Tankyrase binding partner in cancer cells
Q89087470Small Molecule Modulation of Proteasome Assembly
Q33810134Small molecule inhibitors targeting the "achilles' heel" of androgen receptor activity
Q27025648Small-molecule inhibitors of the Myc oncoprotein
Q30842640Sodium dodecyl sulfate monomers induce XAO peptide polyproline II to α-helix transition
Q34624640Sparsely sampled high-resolution 4-D experiments for efficient backbone resonance assignment of disordered proteins
Q91386288Specific metallo-protein interactions and antimicrobial activity in Histatin-5, an intrinsically disordered salivary peptide
Q64059566Spontaneous Switching among Conformational Ensembles in Intrinsically Disordered Proteins
Q92853632Stabilization of Intrinsically Disordered DKK2 Protein by Fusion to RNA-Binding Domain
Q26745907Steroid hormone receptors and prostate cancer: role of structural dynamics in therapeutic targeting
Q92409822Structural Characterization of N-WASP Domain V Using MD Simulations with NMR and SAXS Data
Q51684046Structural Characterization of the Intrinsically Disordered Protein p53 Using Raman Spectroscopy.
Q27671736Structural and Functional Analysis of the Tandem  -Zipper Interaction of a Streptococcal Protein with Human Fibronectin
Q44084623Structural and functional characterization of the MERIT40 to understand its role in DNA repair
Q41864504Structural characterization of an intrinsically unfolded mini-HBX protein from hepatitis B virus
Q38044412Structural characterization of intrinsically disordered proteins by the combined use of NMR and SAXS.
Q47918639Structural consequences of mutations associated with idiopathic restrictive cardiomyopathy
Q38130678Structural disorder and the loss of RNA homeostasis in aging and neurodegenerative disease.
Q37588016Structural disorder in amyloid fibrils: its implication in dynamic interactions of proteins
Q34230264Structural disorder in eukaryotes
Q59350859Structural disorder in the proteome and interactome of Alkhurma virus (ALKV)
Q37351216Structural investigation on the intrinsically disordered N-terminal region of HPV16 E7 protein
Q30432371Structure and dynamic properties of membrane proteins using NMR.
Q97092532Survival of the cheapest: how proteome cost minimization drives evolution
Q36020398Targeting intrinsically disordered proteins in neurodegenerative and protein dysfunction diseases: another illustration of the D(2) concept
Q35835558Targeting intrinsically disordered proteins in rational drug discovery
Q47720283Targeting of Disordered Proteins by Small Molecules in Neurodegenerative Diseases
Q48040565Tau Proteins Cross the Blood-Brain Barrier
Q53395943Tau protein liquid-liquid phase separation can initiate tau aggregation.
Q89900634Taurine Induces an Ordered but Functionally Inactive Conformation in Intrinsically Disordered Casein Proteins
Q37702019Temperature-dependent solvation modulates the dimensions of disordered proteins
Q33851634Test and Evaluation of ff99IDPs Force Field for Intrinsically Disordered Proteins
Q40434276The Proline/Glycine-Rich Region of the Biofilm Adhesion Protein Aap Forms an Extended Stalk that Resists Compaction.
Q30415339The Protein Structure Initiative: achievements and visions for the future
Q56978719The Rational Discovery of a Tau Aggregation Inhibitor
Q33862856The Stress-response protein prostate-associated gene 4, interacts with c-Jun and potentiates its transactivation.
Q28254943The Ubiquitin-Proteasome System and Molecular Chaperone Deregulation in Alzheimer's Disease
Q38779767The alphabet of intrinsic disorder: I. Act like a Pro: On the abundance and roles of proline residues in intrinsically disordered proteins
Q30402098The alphabet of intrinsic disorder: II. Various roles of glutamic acid in ordered and intrinsically disordered proteins
Q35062460The binding mechanisms of intrinsically disordered proteins.
Q34799973The cancer/testis antigen prostate-associated gene 4 (PAGE4) is a highly intrinsically disordered protein
Q28080017The contribution of intrinsically disordered regions to protein function, cellular complexity, and human disease
Q35927955The contribution of protein intrinsic disorder to understand the role of genetic variants uncovered by autism spectrum disorders exome studies.
Q30157397The folding free-energy surface of HIV-1 protease: insights into the thermodynamic basis for resistance to inhibitors
Q38844234The gene expression profiling of hepatocellular carcinoma by a network analysis approach shows a dominance of intrinsically disordered proteins (IDPs) between hub nodes.
Q42277084The heterogeneous structural behavior of E7 from HPV16 revealed by NMR spectroscopy
Q28481319The impact of small molecule binding on the energy landscape of the intrinsically disordered protein C-myc
Q30399038The intrinsic disorder alphabet. III. Dual personality of serine
Q42223133The intrinsic disorder status of the human hepatitis C virus proteome
Q28244482The molecular basis of emerin-emerin and emerin-BAF interactions
Q37462521The mysterious unfoldome: structureless, underappreciated, yet vital part of any given proteome
Q45191700The natural non-protein amino acid N-β-methylamino-L-alanine (BMAA) is incorporated into protein during synthesis
Q38848876The principle of conformational signaling
Q37648726The propensity of the bacterial rodlin protein RdlB to form amyloid fibrils determines its function in Streptomyces coelicolor
Q34046537The protein kingdom extended: ordered and intrinsically disordered proteins, their folding, supramolecular complex formation, and aggregation.
Q39155657The protein level of PGC-1α, a key metabolic regulator, is controlled by NADH-NQO1.
Q41774157The relationship between relative solvent accessible surface area (rASA) and irregular structures in protean segments (ProSs)
Q35185458The relationships among microRNA regulation, intrinsically disordered regions, and other indicators of protein evolutionary rate
Q52583961The rheumatic disease-associated FAM167A-BLK locus encodes DIORA-1, a novel disordered protein highly expressed in bronchial epithelium and alveolar macrophages.
Q42174981The role of intrinsically unstructured proteins in neurodegenerative diseases
Q36019033The role of protein intrinsic disorder in major psychiatric disorders
Q38481133The role of structural disorder in cell cycle regulation, related clinical proteomics, disease development and drug targeting.
Q54343211The roles of intrinsic disorder in orchestrating the Wnt-pathway.
Q47693846The roles of intrinsic disorder-based liquid-liquid phase transitions in the "Dr. Jekyll-Mr. Hyde" behavior of proteins involved in amyotrophic lateral sclerosis and frontotemporal lobar degeneration
Q30372413The unfoldomics decade: an update on intrinsically disordered proteins.
Q38364193There is Diversity in Disorder-"In all Chaos there is a Cosmos, in all Disorder a Secret Order".
Q56774478Thermo-resistant intrinsically disordered proteins are efficient 20S proteasome substrates
Q57329080Thermodynamics of Conformational Transitions in a Disordered Protein Backbone Model
Q30390990Three-Dimensional Model of Human Nicotinamide Nucleotide Transhydrogenase (NNT) and Sequence-Structure Analysis of its Disease-Causing Variations
Q38453379Time window expansion for HDX analysis of an intrinsically disordered protein
Q34093063To fold or expand—a charged question
Q53079816Topology-based modeling of intrinsically disordered proteins: balancing intrinsic folding and intermolecular interactions.
Q34426721Toxin instability and its role in toxin translocation from the endoplasmic reticulum to the cytosol
Q36326844Transient helicity in intrinsically disordered Axin-1 studied by NMR spectroscopy and molecular dynamics simulations
Q36384806Transient β-hairpin formation in α-synuclein monomer revealed by coarse-grained molecular dynamics simulation
Q46392123Translational effects and coding potential of an upstream open reading frame associated with DOPA Responsive Dystonia.
Q33428910Trapping moving targets with small molecules
Q41140502Trimethylamine N-oxide abolishes the chaperone activity of α-casein: an intrinsically disordered protein
Q61813288Troubleshooting Guide to Expressing Intrinsically Disordered Proteins for Use in NMR Experiments
Q51060526Tuning the precision of predictors to reduce overestimation of protein disorder over large datasets.
Q27688964Two potential therapeutic antibodies bind to a peptide segment of membrane-bound IgE in different conformations
Q30401693Tyrosine Regulates β-Sheet Structure Formation in Amyloid-β42: A New Clustering Algorithm for Disordered Proteins
Q30409747Uncertainty analysis in protein disorder prediction
Q50919522Under-folded proteins: Conformational ensembles and their roles in protein folding, function, and pathogenesis.
Q30385084Understanding protein non-folding.
Q38779732Understanding the molecular mechanisms underlying complex cancer genome rearrangements
Q33481254Unfoldomics of human diseases: linking protein intrinsic disorder with diseases
Q38838353Unfoldomics of prostate cancer: on the abundance and roles of intrinsically disordered proteins in prostate cancer
Q37873359Unraveling the role of peptidyl-prolyl isomerases in neurodegeneration
Q30375946Unstructural biology of the Dengue virus proteins.
Q93050870Untangling the Conformational Polymorphism of Disordered Proteins Associated With Neurodegeneration at the Single-Molecule Level
Q36174650Unveiling transient protein-protein interactions that modulate inhibition of alpha-synuclein aggregation by beta-synuclein, a pre-synaptic protein that co-localizes with alpha-synuclein
Q93048656Using Small-Angle Scattering Data and Parametric Machine Learning to Optimize Force Field Parameters for Intrinsically Disordered Proteins
Q37287082Val66Met polymorphism of BDNF alters prodomain structure to induce neuronal growth cone retraction
Q37592050Variation of free-energy landscape of the p53 C-terminal domain induced by acetylation: Enhanced conformational sampling
Q27012942What macromolecular crowding can do to a protein
Q31114815Wide-line NMR and DSC studies on intrinsically disordered p53 transactivation domain and its helically pre-structured segment
Q27000495Wrecked regulation of intrinsically disordered proteins in diseases: pathogenicity of deregulated regulators
Q46579323iPS cells in the study of PD molecular pathogenesis
Q28079390p53 Proteoforms and Intrinsic Disorder: An Illustration of the Protein Structure-Function Continuum Concept
Q24567790pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins
Q60917799pH-Induced Folding of the Caspase-Cleaved Par-4 Tumor Suppressor: Evidence of Structure Outside of the Coiled Coil Domain
Q38241438α-Synuclein Misfolding Versus Aggregation Relevance to Parkinson's Disease: Critical Assessment and Modeling

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