scholarly article | Q13442814 |
P2093 | author name string | Om Prakash | |
Jian Gao | |||
Jianhan Chen | |||
Takeo Iwamoto | |||
John M Tomich | |||
Gabriel A Cook | |||
Alvaro I Herrera | |||
Ahlam Al-Rawi | |||
P2860 | cites work | An Implicit Membrane Generalized Born Theory for the Study of Structure, Stability, and Interactions of Membrane Proteins | Q24537724 |
CHARMM: the biomolecular simulation program | Q24658108 | ||
Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination | Q26778405 | ||
X-ray structure of a prokaryotic pentameric ligand-gated ion channel | Q27650000 | ||
Structure of a potentially open state of a proton-activated pentameric ligand-gated ion channel | Q27652787 | ||
X-ray structure of a pentameric ligand-gated ion channel in an apparently open conformation | Q27652789 | ||
All-atom empirical potential for molecular modeling and dynamics studies of proteins | Q27860468 | ||
VMD: visual molecular dynamics | Q27860554 | ||
Scalable molecular dynamics with NAMD | Q27860718 | ||
NMRPipe: a multidimensional spectral processing system based on UNIX pipes | Q27860859 | ||
Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations | Q29547631 | ||
HOLE: a program for the analysis of the pore dimensions of ion channel structural models | Q29619250 | ||
Pseudo-structures for the 20 common amino acids for use in studies of protein conformations by measurements of intramolecular proton-proton distance constraints with nuclear magnetic resonance | Q70170789 | ||
Amide-based ligands for anion coordination | Q79315081 | ||
CHARMM-GUI: a web-based graphical user interface for CHARMM | Q80900573 | ||
Theoretical and computational models of biological ion channels | Q30158013 | ||
Structural effects of O-glycosylation on a 15-residue peptide from the mucin (MUC1) core protein | Q30614528 | ||
Lipid bilayers, NMR relaxation, and computer simulations | Q30698794 | ||
Generation of native-like protein structures from limited NMR data, modern force fields and advanced conformational sampling | Q30982097 | ||
Conformation and environment of channel-forming peptides: a simulation study | Q31028141 | ||
NH(2)-terminal modification of a channel-forming peptide increases capacity for epithelial anion secretion | Q31919285 | ||
Comparison of protein solution structures refined by molecular dynamics simulation in vacuum, with a generalized Born model, and with explicit water | Q32111367 | ||
Aqueous Solubilization of Transmembrane Peptide Sequences with Retention of Membrane Insertion and Function | Q32135063 | ||
Automated builder and database of protein/membrane complexes for molecular dynamics simulations | Q33298604 | ||
Conformational heterogeneity of the M2 proton channel and a structural model for channel activation | Q33487093 | ||
Molecular structure and physiological function of chloride channels | Q34120773 | ||
NMR structures of the second transmembrane domain of the human glycine receptor alpha(1) subunit: model of pore architecture and channel gating | Q34178286 | ||
Activity and structural comparisons of solution associating and monomeric channel-forming peptides derived from the glycine receptor m2 segment | Q34184950 | ||
The transmembrane domain of the acetylcholine receptor: insights from simulations on synthetic peptide models | Q34189110 | ||
Theoretical studies of the M2 transmembrane segment of the glycine receptor: models of the open pore structure and current-voltage characteristics | Q34351064 | ||
Ion conduction and selectivity in K(+) channels | Q34415730 | ||
Redesigning channel-forming peptides: amino acid substitutions that enhance rates of supramolecular self-assembly and raise ion transport activity | Q34418836 | ||
The structure of the M2 channel-lining segment from the nicotinic acetylcholine receptor | Q34985096 | ||
Membrane assembly of simple helix homo-oligomers studied via molecular dynamics simulations | Q35606823 | ||
Bilayer deformation by the Kv channel voltage sensor domain revealed by self-assembly simulations. | Q35635569 | ||
Transmembrane helices before, during, and after insertion | Q36206950 | ||
Immunity to a self-derived, channel-forming peptide in the respiratory tract | Q36452329 | ||
Physiologic principles underlying ion channelopathies | Q36774694 | ||
Misfolded amyloid ion channels present mobile beta-sheet subunits in contrast to conventional ion channels | Q37443832 | ||
Pores formed by the nicotinic receptor m2delta Peptide: a molecular dynamics simulation study | Q40225895 | ||
Molecular mechanisms of CFTR chloride channel dysfunction in cystic fibrosis | Q40488178 | ||
Distinct structural elements that direct solution aggregation and membrane assembly in the channel-forming peptide M2GlyR. | Q40727937 | ||
Synthetic chloride channel restores glutathione secretion in cystic fibrosis airway epithelia | Q40798935 | ||
A synthetic channel-forming peptide induces Cl(-) secretion: modulation by Ca(2+)-dependent K(+) channels | Q40895642 | ||
A synthetic peptide derived from glycine-gated Cl- channel induces transepithelial Cl- and fluid secretion | Q41112885 | ||
Application of solid-state NMR restraint potentials in membrane protein modeling | Q42146940 | ||
Homology modeling and molecular dynamics simulations of the alpha1 glycine receptor reveals different states of the channel | Q42618746 | ||
A novel method for structure-based prediction of ion channel conductance properties. | Q42933748 | ||
Barriers to ion translocation in cationic and anionic receptors from the Cys-loop family | Q44133151 | ||
Structural implications of placing cationic residues at either the NH2- or COOH-terminus in a pore-forming synthetic peptide | Q44243580 | ||
Improved treatment of the protein backbone in empirical force fields. | Q44735024 | ||
Design, synthesis and functional characterization of a pentameric channel protein that mimics the presumed pore structure of the nicotinic cholinergic receptor | Q44848469 | ||
Synthetic peptides and four-helix bundle proteins as model systems for the pore-forming structure of channel proteins. II. Transmembrane segment M2 of the brain glycine receptor is a plausible candidate for the pore-lining structure | Q46013119 | ||
Refinement of NMR structures using implicit solvent and advanced sampling techniques | Q46105233 | ||
Channel-forming peptide modulates transepithelial electrical conductance and solute permeability | Q47582336 | ||
Interactions between the chloride anion and aromatic molecules: infrared spectra of the Cl- -C6H5CH3, Cl- -C6H5NH2 and Cl- -C6H5OH complexes | Q50693484 | ||
Torsion-angle molecular dynamics as a new efficient tool for NMR structure calculation. | Q52281421 | ||
P433 | issue | 10 | |
P407 | language of work or name | English | Q1860 |
P304 | page(s) | 2238-2250 | |
P577 | publication date | 2010-08-01 | |
P1433 | published in | Proteins | Q7251514 |
P1476 | title | Structural characterization of two pore-forming peptides: consequences of introducing a C-terminal tryptophan | |
P478 | volume | 78 |
Q37353840 | Effect of diaminopropionic acid (Dap) on the biophysical properties of a modified synthetic channel-forming peptide |
Q37125860 | Effects of Flanking Loops on Membrane Insertion of Transmembrane Helices: A Role for Peptide Conformational Equilibrium |
Q37876360 | Fluorescence spectroscopy and molecular dynamics simulations in studies on the mechanism of membrane destabilization by antimicrobial peptides. |
Q41988869 | Solution Structure and Expression Profile of an Insect Cytokine: Manduca sexta Stress Response Peptide-2. |
Q33991078 | Structural and biophysical properties of a synthetic channel-forming peptide: Designing a clinically relevant anion selective pore |
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