| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/bmcsb/Silva-RochaJTL11 |
| P6179 | Dimensions Publication ID | 1045059923 |
| P356 | DOI | 10.1186/1752-0509-5-191 |
| P932 | PMC publication ID | 3253710 |
| P698 | PubMed publication ID | 22078029 |
| P5875 | ResearchGate publication ID | 51793656 |
| P50 | author | Javier Tamames | Q84336868 |
| Victor de Lorenzo | Q30513692 | ||
| Rafael Silva-Rocha | Q42137373 | ||
| P2093 | author name string | Hidde de Jong | |
| P2860 | cites work | Lateral gene transfer and the nature of bacterial innovation | Q22122396 |
| Structure and function of the feed-forward loop network motif | Q24683513 | ||
| TOM, a new aromatic degradative plasmid from Burkholderia (Pseudomonas) cepacia G4 | Q28367685 | ||
| The carbon assimilation network in Escherichia coli is densely connected and largely sign-determined by directions of metabolic fluxes | Q28474349 | ||
| Transcriptional wiring of the TOL plasmid regulatory network to its host involves the submission of the sigma54-promoter Pu to the response regulator PprA. | Q46166665 | ||
| Genetic Network Analyzer: qualitative simulation of genetic regulatory networks. | Q48605631 | ||
| The xylS gene positive regulator of TOL plasmid pWWO: identification, sequence analysis and overproduction leading to constitutive expression of meta cleavage operon | Q50201339 | ||
| Model Reduction Using Piecewise-Linear Approximations Preserves Dynamic Properties of the Carbon Starvation Response in Escherichia coli | Q51638347 | ||
| Competition favours reduced cost of plasmids to host bacteria. | Q51664301 | ||
| Novel physiological modulation of the Pu promoter of TOL plasmid: negative regulatory role of the TurA protein of Pseudomonas putida in the response to suboptimal growth temperatures. | Q54513931 | ||
| Activation of the Pseudomonas TOL plasmid upper pathway operon. Identification of binding sites for the positive regulator XylR and for integration host factor protein. | Q54693004 | ||
| A composite feed-forward loop I4-FFL involving IHF and Crc stabilizes expression of the XylR regulator of Pseudomonas putida mt-2 from growth phase perturbations | Q57935735 | ||
| Assemblage of ortho cleavage route for simultaneous degradation of chloro- and methylaromatics | Q68779522 | ||
| The logical analysis of continuous, non-linear biochemical control networks | Q69589433 | ||
| Network motifs: simple building blocks of complex networks | Q29547340 | ||
| Network motifs in the transcriptional regulation network of Escherichia coli | Q29547342 | ||
| Qualitative simulation of genetic regulatory networks using piecewise-linear models. | Q31044114 | ||
| Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199. | Q33853412 | ||
| Horizontal gene transfer and the origin of species: lessons from bacteria. | Q33856631 | ||
| Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria | Q33951673 | ||
| Paradigms of plasmid organization | Q33994576 | ||
| BenR, a XylS homologue, regulates three different pathways of aromatic acid degradation in Pseudomonas putida | Q33994918 | ||
| Monitoring intracellular levels of XylR in Pseudomonas putida with a single-chain antibody specific for aromatic-responsive enhancer-binding proteins. | Q33996901 | ||
| Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics | Q34075113 | ||
| Computational studies of gene regulatory networks: in numero molecular biology. | Q34205538 | ||
| Expression of the regulatory gene xylS on the TOL plasmid is positively controlled by the xylR gene product | Q34332868 | ||
| Modeling and simulation of genetic regulatory systems: a literature review | Q34575847 | ||
| Genomic islands and the evolution of catabolic pathways in bacteria | Q35172595 | ||
| Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site | Q35201987 | ||
| Identifying global regulators in transcriptional regulatory networks in bacteria | Q35565608 | ||
| Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity. | Q35613132 | ||
| Promoters in the environment: transcriptional regulation in its natural context | Q36026783 | ||
| Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway | Q36184658 | ||
| Molecular and functional analysis of the TOL plasmid pWWO from Pseudomonas putida and cloning of genes for the entire regulated aromatic ring meta cleavage pathway | Q36382584 | ||
| The regulatory genome and the computer | Q36932798 | ||
| Catabolic mobile genetic elements and their potential use in bioaugmentation of polluted soils and waters | Q37587424 | ||
| Carbon catabolite repression in Pseudomonas : optimizing metabolic versatility and interactions with the environment. | Q37735901 | ||
| The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms | Q37853611 | ||
| The Crc global regulator inhibits the Pseudomonas putida pWW0 toluene/xylene assimilation pathway by repressing the translation of regulatory and structural genes. | Q38343496 | ||
| Activation and repression of transcription at the double tandem divergent promoters for the xylR and xylS genes of the TOL plasmid of Pseudomonas putida | Q39566245 | ||
| Metabolism of toluene and xylenes by Pseudomonas (putida (arvilla) mt-2: evidence for a new function of the TOL plasmid | Q40036071 | ||
| Upstream binding sequences of the XylR activator protein and integration host factor in the xylS gene promoter region of the Pseudomonas TOL plasmid | Q40421699 | ||
| Cellular XylS levels are a function of transcription of xylS from two independent promoters and the differential efficiency of translation of the two mRNAs | Q40634181 | ||
| Analysis and construction of stable phenotypes in gram-negative bacteria with Tn5- and Tn10-derived minitransposons | Q40687515 | ||
| A Tn7-based broad-range bacterial cloning and expression system | Q41458282 | ||
| Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators | Q41620651 | ||
| Roles of effectors in XylS-dependent transcription activation: intramolecular domain derepression and DNA binding | Q41893759 | ||
| Transfer and Expression of the Catabolic Plasmid pBRC60 in Wild Bacterial Recipients in a Freshwater Ecosystem | Q42925570 | ||
| The regulatory logic of m-xylene biodegradation by Pseudomonas putida mt-2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid. | Q43018524 | ||
| P4510 | describes a project that uses | ImageJ | Q1659584 |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | biodegradation | Q696715 |
| Pseudomonas putida | Q2738168 | ||
| 3-methylbenzyl alcohol | Q27290322 | ||
| P304 | page(s) | 191 | |
| P577 | publication date | 2011-11-11 | |
| P1433 | published in | BMC Systems Biology | Q4835949 |
| P1476 | title | The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene | |
| P478 | volume | 5 |
| Q38204897 | Biotechnological domestication of pseudomonads using synthetic biology. |
| Q51367731 | Broadening the signal specificity of prokaryotic promoters by modifying cis-regulatory elements associated with a single transcription factor. |
| Q62610028 | Current View of The Mechanisms Controlling The Transcription of The TOL Plasmid Aromatic Degradation Pathways |
| Q42966494 | Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2. |
| Q34554182 | Effects of binary mixtures of inducers (toluene analogs) and of metals on bioluminescence induction of a recombinant bioreporter strain |
| Q100750162 | Exploring the synthetic biology potential of bacteriophages for engineering non-model bacteria |
| Q38296480 | High-resolution analysis of the m-xylene/toluene biodegradation subtranscriptome of Pseudomonas putida mt-2. |
| Q28484355 | Increasing signal specificity of the TOL network of Pseudomonas putida mt-2 by rewiring the connectivity of the master regulator XylR |
| Q37986491 | Industrial biotechnology of Pseudomonas putida and related species |
| Q92320401 | Physical decoupling of XylS/Pm regulatory elements and conditional proteolysis enable precise control of gene expression in Pseudomonas putida |
| Q38019717 | Programmable bacterial catalysis - designing cells for biosynthesis of value-added compounds. |
| Q50695297 | Rationally rewiring the connectivity of the XylR/Pu regulatory node of the m-xylene degradation pathway in Pseudomonas putida. |
| Q47325767 | Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt-2 exposed to m-xylene |
| Q40076031 | The TOL network of Pseudomonas putida mt-2 processes multiple environmental inputs into a narrow response space |
| Q39170128 | The XylS/Pm regulator/promoter system and its use in fundamental studies of bacterial gene expression, recombinant protein production and metabolic engineering |
| Q57935557 | The differential response of thePbenpromoter ofPseudomonas putida mt-2 to BenR and XylS prevents metabolic conflicts inm-xylene biodegradation |
| Q38171535 | The private life of environmental bacteria: pollutant biodegradation at the single cell level |
| Q53645414 | Widening functional boundaries of the σ(54) promoter Pu of Pseudomonas putida by defeating extant physiological constraints. |
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