| scholarly article | Q13442814 |
| P819 | ADS bibcode | 2002PNAS...9910555R |
| P356 | DOI | 10.1073/PNAS.152046799 |
| P932 | PMC publication ID | 124972 |
| P698 | PubMed publication ID | 12145321 |
| P5875 | ResearchGate publication ID | 11237732 |
| P50 | author | Uri Alon | Q7900508 |
| P2093 | author name string | Boris I Shraiman | |
| Michal Ronen | |||
| Revital Rosenberg | |||
| P2860 | cites work | Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization | Q24657378 |
| The complete genome sequence of Escherichia coli K-12 | Q27860542 | ||
| Systematic determination of genetic network architecture | Q28138580 | ||
| SOS Repair Hypothesis: Phenomenology of an Inducible DNA Repair Which is Accompanied by Mutagenesis | Q28141658 | ||
| Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli | Q28364148 | ||
| FACS-optimized mutants of the green fluorescent protein (GFP) | Q29547322 | ||
| Network motifs in the transcriptional regulation network of Escherichia coli | Q29547342 | ||
| From molecular to modular cell biology | Q29547493 | ||
| Integrated genomic and proteomic analyses of a systematically perturbed metabolic network | Q29616021 | ||
| Exploring the new world of the genome with DNA microarrays | Q29616559 | ||
| Singular value decomposition for genome-wide expression data processing and modeling | Q29618495 | ||
| Serial regulation of transcriptional regulators in the yeast cell cycle | Q29620484 | ||
| Coping with replication 'train wrecks' in Escherichia coli using Pol V, Pol II and RecA proteins | Q33885426 | ||
| Genomics, gene expression and DNA arrays | Q33906813 | ||
| Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria | Q33951673 | ||
| The SOS response: recent insights into umuDC-dependent mutagenesis and DNA damage tolerance | Q34090796 | ||
| Genetic network inference: from co-expression clustering to reverse engineering | Q34094471 | ||
| DNA damage control by novel DNA polymerases: translesion replication and mutagenesis | Q34260300 | ||
| Design principles for elementary gene circuits: Elements, methods, and examples | Q35142363 | ||
| DNA-damaging agents stimulate gene expression at specific loci in Escherichia coli | Q36389606 | ||
| Global analysis of the genetic network controlling a bacterial cell cycle | Q38305782 | ||
| Global impact of sdiA amplification revealed by comprehensive gene expression profiling of Escherichia coli | Q39503203 | ||
| LuxArray, a high-density, genomewide transcription analysis of Escherichia coli using bioluminescent reporter strains | Q39504901 | ||
| The SOS regulatory system of Escherichia coli | Q40335741 | ||
| Identification of additional genes belonging to the LexA regulon in Escherichia coli | Q42486422 | ||
| Response regulator output in bacterial chemotaxis | Q42649639 | ||
| Identification of UvrY as the cognate response regulator for the BarA sensor kinase in Escherichia coli. | Q43507984 | ||
| Genomic Cis-Regulatory Logic: Experimental and Computational Analysis of a Sea Urchin Gene | Q46041940 | ||
| Nature of the SOS-inducing signal in Escherichia coli. The involvement of DNA replication. | Q54716069 | ||
| LexA Repressor Forms Stable Dimers in Solution | Q57084742 | ||
| Transcriptional induction of the conserved alternative sigma factor RpoS in Escherichia coli is dependent on BarA, a probable two-component regulator | Q74130059 | ||
| P433 | issue | 16 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 10555-10560 | |
| P577 | publication date | 2002-07-26 | |
| P1433 | published in | Proceedings of the National Academy of Sciences of the United States of America | Q1146531 |
| P1476 | title | Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics | |
| P478 | volume | 99 |
| Q45230531 | A New Approach to Dynamic Fuzzy Modeling of Genetic Regulatory Networks |
| Q33911537 | A New Transcriptional Effect Level Index (TELI) for Toxicogenomics-based Toxicity Assessment |
| Q24672559 | A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli |
| Q33251466 | A comprehensive library of fluorescent transcriptional reporters for Escherichia coli |
| Q31038747 | A fluctuation method to quantify in vivo fluorescence data |
| Q36066606 | A journey from reductionist to systemic cell biology aboard the schooner Tara |
| Q25256640 | A microarray data-based semi-kinetic method for predicting quantitative dynamics of genetic networks |
| Q40277094 | A nonlinear discrete dynamical model for transcriptional regulation: construction and properties |
| Q27936881 | A systems approach to delineate functions of paralogous transcription factors: role of the Yap family in the DNA damage response. |
| Q24644624 | Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network |
| Q40230898 | Adaptive tuning of mutation rates allows fast response to lethal stress in Escherichia coli |
| Q35737468 | An S-System Parameter Estimation Method (SPEM) for biological networks. |
| Q34399927 | An integer optimization algorithm for robust identification of non-linear gene regulatory networks |
| Q34620032 | Analysing microarray data in drug discovery using systems biology. |
| Q35998101 | Analyzing the biology on the system level |
| Q41622529 | Antagonistic autoregulation speeds up a homogeneous response in Escherichia coli. |
| Q24669682 | Autogenous and nonautogenous control of response in a genetic network |
| Q94687270 | BICORN: An R package for integrative inference of de novo cis-regulatory modules |
| Q34334679 | Bacterial nucleoid-associated protein uncouples transcription levels from transcription timing |
| Q42657285 | BasyLiCA: a tool for automatic processing of a Bacterial Live Cell Array |
| Q33511359 | Bayesian inference of biochemical kinetic parameters using the linear noise approximation. |
| Q33284251 | Bayesian model-based inference of transcription factor activity |
| Q33403701 | Benchmarks for identification of ordinary differential equations from time series data |
| Q47111820 | Beyond the Michaelis-Menten equation: Accurate and efficient estimation of enzyme kinetic parameters |
| Q35146255 | Building with a scaffold: emerging strategies for high- to low-level cellular modeling |
| Q41549620 | CN: a consensus algorithm for inferring gene regulatory networks using the SORDER algorithm and conditional mutual information test. |
| Q30401785 | Cellular heterogeneity and live cell arrays |
| Q43505112 | Chapter 8: Spatiotemporal dynamics in bacterial cells: real-time studies with single-event resolution |
| Q42197915 | Characterization of Intrinsic Properties of Promoters |
| Q34760785 | Characterization of flavin-based fluorescent proteins: an emerging class of fluorescent reporters |
| Q28239582 | Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks |
| Q33194301 | Cloning and expression of cDNA for a luciferase from the marine copepod Metridia longa. A novel secreted bioluminescent reporter enzyme |
| Q29346851 | Cohabitation of two different lexA regulons in Pseudomonas putida. |
| Q28749012 | Comparative study of three commonly used continuous deterministic methods for modeling gene regulation networks |
| Q36539847 | Complex networks and simple models in biology. |
| Q36279828 | Computational design of genomic transcriptional networks with adaptation to varying environments |
| Q35756255 | Computational physiology and the Physiome Project |
| Q35171528 | Conditional mutual inclusive information enables accurate quantification of associations in gene regulatory networks |
| Q39685308 | Construction of Gene Regulatory Networks Using Recurrent Neural Networks and Swarm Intelligence |
| Q42928416 | Contributions of the pre- and pro-regions of a Staphylococcus hyicus lipase to secretion of a heterologous protein by Bacillus subtilis |
| Q27306732 | Control of relative timing and stoichiometry by a master regulator |
| Q50233779 | Cooperativity of Negative Autoregulation Confers Increased Mutational Robustness |
| Q30833106 | De novo reconstruction of gene regulatory networks from time series data, an approach based on formal methods |
| Q35621367 | Design of gene circuits: lessons from bacteria |
| Q35146579 | Detailed map of a cis-regulatory input function |
| Q50459116 | Detection of induced synthesis of colicin E9 using ColE9p::gfpmut2 based reporter system |
| Q40836557 | Dissecting specific and global transcriptional regulation of bacterial gene expression |
| Q24647458 | Diverse two-dimensional input functions control bacterial sugar genes |
| Q49953352 | Dynamic Measures of Flagellar Gene Expression |
| Q46796184 | Dynamic change in promoter activation during lysine biosynthesis in Escherichia coli cells |
| Q47693920 | Dynamic optimization identifies optimal programmes for pathway regulation in prokaryotes. |
| Q33316587 | Dynamical pathway analysis |
| Q92229650 | Dynamics of transcription-translation coordination tune bacterial indole signaling |
| Q54372713 | Effect of recA inactivation on mutagenesis of Escherichia coli exposed to sublethal concentrations of antimicrobials |
| Q50603290 | Estimation of delays in generalized asynchronous Boolean networks |
| Q30494695 | Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria |
| Q34881942 | Extensive low-affinity transcriptional interactions in the yeast genome |
| Q47304740 | Extreme Learning Machines for reverse engineering of gene regulatory networks from expression time series. |
| Q39292403 | Fluctuation sensitivity of a transcriptional signaling cascade. |
| Q36141647 | From signatures to models: understanding cancer using microarrays |
| Q33314676 | Function approximation approach to the inference of reduced NGnet models of genetic networks |
| Q35167516 | Functional genomics and proteomics: charting a multidimensional map of the yeast cell |
| Q36187354 | Gene Regulatory Network Inferences Using a Maximum-Relevance and Maximum-Significance Strategy. |
| Q37128617 | Gene promoter scan methodology for identifying and classifying coregulated promoters |
| Q28728105 | Gene regulatory network modeling via global optimization of high-order dynamic Bayesian network |
| Q33744432 | Genes regulated by the Escherichia coli SOS repressor LexA exhibit heterogeneous expression |
| Q24796086 | Genome-wide analysis of the context-dependence of regulatory networks |
| Q33791193 | Genome-wide patterns of promoter sharing and co-expression in bovine skeletal muscle |
| Q55264840 | Glucose-Dependent Promoters for Dynamic Regulation of Metabolic Pathways. |
| Q36150999 | Graphlet Based Metrics for the Comparison of Gene Regulatory Networks |
| Q57463103 | HSCVFNT: Inference of Time-Delayed Gene Regulatory Network Based on Complex-Valued Flexible Neural Tree Model |
| Q42506677 | Heterogeneity in expression of the Escherichia coli colicin K activity gene cka is controlled by the SOS system and stochastic factors. |
| Q35006510 | Hierarchy of non-glucose sugars in Escherichia coli |
| Q33958766 | How antibiotics kill bacteria: from targets to networks |
| Q46318127 | How likely are oscillations in a genetic feedback loop with delay? |
| Q34471588 | Hybrid incompatibility arises in a sequence-based bioenergetic model of transcription factor binding |
| Q34643738 | Identification of genetic networks |
| Q48668624 | Implementing an OR–NOT (ORN) logic gate with components of the SOS regulatory network of Escherichia coli |
| Q40781185 | Improving gene regulatory network inference using network topology information. |
| Q34777493 | Incorporating time-delays in S-System model for reverse engineering genetic networks |
| Q33369221 | Increasing the efficiency of bacterial transcription simulations: when to exclude the genome without loss of accuracy |
| Q28553341 | Inference of Gene Regulatory Network Based on Local Bayesian Networks |
| Q51478193 | Inference of S-system models of genetic networks by solving one-dimensional function optimization problems |
| Q35080270 | Inference of Vohradský's models of genetic networks by solving two-dimensional function optimization problems |
| Q34060651 | Inference of complex biological networks: distinguishability issues and optimization-based solutions |
| Q28543024 | Inference of quantitative models of bacterial promoters from time-series reporter gene data |
| Q47094705 | Inference of time-delayed gene regulatory networks based on dynamic Bayesian network hybrid learning method |
| Q34076077 | Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information |
| Q39839297 | Inferring gene regulatory networks using a time-delayed mass action model. |
| Q34272635 | Inferring robust gene networks from expression data by a sensitivity-based incremental evolution method |
| Q35671716 | Integration of Metabolic and Quorum Sensing Signals Governing the Decision to Cooperate in a Bacterial Social Trait |
| Q38673851 | Integration of structural dynamics and molecular evolution via protein interaction networks: a new era in genomic medicine |
| Q33594922 | Integration of transcriptional inputs at promoters of the arabinose catabolic pathway |
| Q30827685 | Investigating the effects of imputation methods for modelling gene networks using a dynamic bayesian network from gene expression data |
| Q33202257 | Just-in-time transcription program in metabolic pathways |
| Q21145898 | Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles |
| Q36624120 | Lex marks the spot: the virulent side of SOS and a closer look at the LexA regulon |
| Q35165190 | Linear superposition and prediction of bacterial promoter activity dynamics in complex conditions |
| Q42318873 | LoTo: a graphlet based method for the comparison of local topology between gene regulatory networks. |
| Q60044702 | MICRAT: a novel algorithm for inferring gene regulatory networks using time series gene expression data |
| Q35598616 | Malate-mediated carbon catabolite repression in Bacillus subtilis involves the HPrK/CcpA pathway |
| Q37194950 | Measuring the activity of BioBrick promoters using an in vivo reference standard |
| Q35130461 | Mechanisms of transcriptional regulation underlying temporal integration of signals |
| Q51363490 | Mode of Regulation and the Insulation of Bacterial Gene Expression |
| Q51638347 | Model Reduction Using Piecewise-Linear Approximations Preserves Dynamic Properties of the Carbon Starvation Response in Escherichia coli |
| Q37325837 | Moving H5N1 studies into the era of systems biology |
| Q33958883 | Negative auto-regulation increases the input dynamic-range of the arabinose system of Escherichia coli |
| Q33962256 | Negative autoregulation speeds the response times of transcription networks |
| Q34788818 | Network component analysis: reconstruction of regulatory signals in biological systems |
| Q33373148 | Network evaluation from the consistency of the graph structure with the measured data |
| Q92739613 | Network inference performance complexity: a consequence of topological, experimental and algorithmic determinants |
| Q37645904 | Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction |
| Q29615325 | Network motifs: theory and experimental approaches |
| Q37308897 | Networking opportunities for bacteria. |
| Q34408957 | Noise and information transmission in promoters with multiple internal States. |
| Q55193696 | Non-equilibrium repressor binding kinetics link DNA damage dose to transcriptional timing within the SOS gene network. |
| Q41884216 | Optimizing information flow in small genetic networks. |
| Q53975052 | Optimizing information flow in small genetic networks. III. A self-interacting gene |
| Q57796668 | Ordering up gene expression by slowing down transcription factor binding kinetics |
| Q54354803 | Outer membrane proteome and its regulation networks in response to glucose concentration changes in Escherichia coli. |
| Q40622156 | PAINT: A Promoter Analysis and Interaction Network Generation Tool for Gene Regulatory Network Identification |
| Q36069213 | Pathway information for systems biology |
| Q35220962 | Phenotypic signatures arising from unbalanced bacterial growth |
| Q24810491 | Precise temporal modulation in the response of the SOS DNA repair network in individual bacteria |
| Q37283280 | Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences |
| Q36128609 | Prodigiosin - A Multifaceted Escherichia coli Antimicrobial Agent |
| Q34322635 | Programmable cells: interfacing natural and engineered gene networks |
| Q41005426 | Quantifying mRNA synthesis and decay rates using small RNAs |
| Q33340911 | Quantitative kinetic analysis of the bacteriophage lambda genetic network |
| Q35012892 | Ranked prediction of p53 targets using hidden variable dynamic modeling |
| Q30882253 | Reconciling Gene Expression Data With Known Genome-Scale Regulatory Network Structures |
| Q38658502 | Reconstructing Genetic Regulatory Networks Using Two-Step Algorithms with the Differential Equation Models of Neural Networks |
| Q35214679 | Reconstructing repressor protein levels from expression of gene targets in Escherichia coli |
| Q33381479 | Reconstruction of transcriptional dynamics from gene reporter data using differential equations |
| Q39232643 | Reproducibility of High-Throughput Plate-Reader Experiments in Synthetic Biology. |
| Q52014853 | Response delays and the structure of transcription networks |
| Q34741251 | Reverse engineering gene regulatory networks: coupling an optimization algorithm with a parameter identification technique |
| Q50555098 | Reverse engineering of gene regulatory network using restricted gene expression programming |
| Q51298649 | Rigidity and flexibility of biological networks |
| Q27304457 | Robust reconstruction of gene expression profiles from reporter gene data using linear inversion. |
| Q28552614 | SOS System Induction Inhibits the Assembly of Chemoreceptor Signaling Clusters in Salmonella enterica |
| Q38219786 | SOS, the formidable strategy of bacteria against aggressions. |
| Q41863552 | Shared control of gene expression in bacteria by transcription factors and global physiology of the cell. |
| Q61799278 | Spatial and temporal organization of RecA in the DNA-damage response |
| Q27008304 | Spatial and temporal organization of signaling pathways |
| Q33536587 | Statistical model comparison applied to common network motifs |
| Q33344698 | Stimulus-dependent differential regulation in the Escherichia coli PhoQ PhoP system |
| Q40529613 | Stochastic S-system modeling of gene regulatory network |
| Q42292083 | Stochastic timing in gene expression for simple regulatory strategies. |
| Q51923408 | Subgraph ensembles and motif discovery using an alternative heuristic for graph isomorphism |
| Q24672399 | Synthetic biology: new engineering rules for an emerging discipline |
| Q39787788 | Synthetic in vitro transcriptional oscillators |
| Q35172083 | Systems interface biology |
| Q35660182 | Temporal hierarchy of gene expression mediated by transcription factor binding affinity and activation dynamics |
| Q34275513 | The Coherent Feedforward Loop Serves as a Sign-sensitive Delay Element in Transcription Networks |
| Q28482375 | The Escherichia coli SOS gene dinF protects against oxidative stress and bile salts |
| Q57935727 | The Logic of Decision Making in Environmental Bacteria |
| Q24644242 | The incoherent feed-forward loop can generate non-monotonic input functions for genes |
| Q42612241 | The large mechanosensitive channel MscL determines bacterial susceptibility to the bacteriocin sublancin 168 |
| Q34636989 | The last generation of bacterial growth in limiting nutrient |
| Q34073036 | The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene |
| Q37853611 | The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms |
| Q94047112 | The numbers come to light |
| Q35910863 | The promoter architectural landscape of the Salmonella PhoP regulon |
| Q28282654 | The role of SOS boxes in enteric bacteriocin regulation |
| Q33983129 | The transcriptional regulatory network of Mycobacterium tuberculosis |
| Q40076031 | TheTOLnetwork ofPseudomonas putidamt‐2 processes multiple environmental inputs into a narrowresponse space |
| Q28481731 | Thermodynamic State Ensemble Models of cis-Regulation |
| Q33739970 | Thermodynamically consistent Bayesian analysis of closed biochemical reaction systems |
| Q33546167 | TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach |
| Q51985085 | Topological generalizations of network motifs |
| Q34853948 | Towards a dynamical network view of brain ischemia and reperfusion. Part IV: additional considerations |
| Q50046781 | Transcriptional autoregulation of the RcsCDB phosphorelay system in Salmonella enterica serovar Typhimurium |
| Q34249829 | Transcriptional response of steady-state yeast cultures to transient perturbations in carbon source. |
| Q35736046 | Transcriptome-based determination of multiple transcription regulator activities in Escherichia coli by using network component analysis |
| Q98463614 | Transcriptomic determinants of the response of ST-111 Pseudomonas aeruginosa AG1 to ciprofloxacin identified by a top-down systems biology approach |
| Q33279151 | UV-induced mutagenesis in Escherichia coli SOS response: a quantitative model |
| Q33965509 | Unraveling gene regulatory networks from time-resolved gene expression data - a measures comparison study |
| Q33419808 | Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast |
| Q64914579 | WellInverter: a web application for the analysis of fluorescent reporter gene data. |
| Q50026407 | Windowed Granger causal inference strategy improves discovery of gene regulatory networks. |
Search more.