Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. (scientific article)

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Q57248142	Effect of nitrogen fertilizer on nitrogen pools and soil communities under grazed pastures
Q43330451	Effect of turning frequency and season on composting materials from swine high-rise facilities
Q35052027	Effects of allylthiourea, salinity, and pH on ammonia/ammonium-oxidizing prokaryotes in mangrove sediment incubated in laboratory microcosms
Q40401625	Effects of dicyandiamide and acetylene on N2O emissions and ammonia oxidizers in a fluvo-aquic soil applied with urea.
Q43320717	Effects of dynamic operating conditions on nitrification in biological rapid sand filters for drinking water treatment
Q33532672	Effects of mercury on the activity and community composition of soil ammonia oxidizers
Q57238112	Effects of nitrogen deposition rates and frequencies on the abundance of soil nitrogen-related functional genes in temperate grassland of northern China
Q43718409	Effects of olive mill wastewater on soil carbon and nitrogen cycling
Q51838992	Effects of planting Phragmites australis on nitrogen removal, microbial nitrogen cycling, and abundance of ammonia-oxidizing and denitrifying microorganisms in sediments.
Q41212283	Effects of silver nanoparticles on nitrification and associated nitrous oxide production in aquatic environments
Q33555217	Effects of sponge bleaching on ammonia-oxidizing Archaea: distribution and relative expression of ammonia monooxygenase genes associated with the barrel sponge Xestospongia muta
Q34778305	Effects of submerged macrophytes on the abundance and community composition of ammonia-oxidizing prokaryotes in a eutrophic lake
Q57238135	Effects of super absorbent polymers on soil microbial properties and Chinese cabbage (Brassica chinensis) growth
Q89619320	Effects of urease and nitrification inhibitors on soil N, nitrifier abundance and activity in a sandy loam soil
Q30563769	Elevated atmospheric CO2 impacts abundance and diversity of nitrogen cycling functional genes in soil
Q46325958	Elevational diversity and distribution of ammonia-oxidizing archaea community in meadow soils on the Tibetan Plateau
Q34307068	Emergent macrophytes act selectively on ammonia-oxidizing bacteria and archaea
Q46360905	Emergent macrophytes modify the abundance and community composition of ammonia oxidizers in their rhizosphere sediments.
Q39512644	Enhanced viral activity and dark CO2 fixation rates under oxygen depletion: the case study of the marine Lake Rogoznica
Q34367127	Enhancing nitrification at low temperature with zeolite in a mining operations retention pond
Q33895974	Enrichment and characterization of ammonia-oxidizing archaea from the open ocean: phylogeny, physiology and stable isotope fractionation
Q34049106	Enrichment and characterization of an autotrophic ammonia-oxidizing archaeon of mesophilic crenarchaeal group I.1a from an agricultural soil
Q35053731	Enrichment and genome sequence of the group I.1a ammonia-oxidizing Archaeon "Ca. Nitrosotenuis uzonensis" representing a clade globally distributed in thermal habitats
Q34066105	Environmental factors determining ammonia-oxidizing organism distribution and diversity in marine environments
Q37488407	Environmental factors shaping the ecological niches of ammonia-oxidizing archaea
Q28743856	Environmental shaping of sponge associated archaeal communities
Q33671825	Estimation of nitrifier abundances in a partial nitrification reactor treating ammonium-rich saline wastewater using DGGE, T-RFLP and mathematical modeling
Q43346727	Evaluating the solid retention time of bacteria in flocculent and granular sludge
Q35033438	Evaluation of autotrophic growth of ammonia-oxidizers associated with granular activated carbon used for drinking water purification by DNA-stable isotope probing
Q37605596	Evaluation of droplet digital PCR for characterizing plasmid reference material used for quantifying ammonia oxidizers and denitrifiers
Q41706691	Evidence for different contributions of archaea and bacteria to the ammonia-oxidizing potential of diverse Oregon soils.
Q38859551	Evidence that ammonia-oxidizing archaea are more abundant than ammonia-oxidizing bacteria in semiarid soils of northern Arizona, USA.
Q92965767	Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons
Q64090700	Extent of the annual Gulf of Mexico hypoxic zone influences microbial community structure
Q90782008	Extremophilic nitrite-oxidizing Chloroflexi from Yellowstone hot springs
Q40411938	First report of bacterial community from a Bat Guano using Illumina next-generation sequencing.
Q46257299	Free-living chemoautotrophic and particle-attached heterotrophic prokaryotes dominate microbial assemblages along a pelagic redox gradient
Q57238123	Frontiers in the microbial processes of ammonia oxidation in soils and sediments
Q33819195	Functional Gene Diversity and Metabolic Potential of the Microbial Community in an Estuary-Shelf Environment
Q34159362	Functional convergence of microbes associated with temperate marine sponges
Q34786894	Functional gene analysis of freshwater iron-rich flocs at circumneutral pH and isolation of a stalk-forming microaerophilic iron-oxidizing bacterium
Q36097585	Fungal endophyte Phomopsis liquidambari affects nitrogen transformation processes and related microorganisms in the rice rhizosphere.
Q40238989	Genome and epigenome of a novel marine Thaumarchaeota strain suggest viral infection, phosphorothioation DNA modification and multiple restriction systems.
Q21560858	Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis
Q21131994	Genome sequence of Candidatus Nitrososphaera evergladensis from group I.1b enriched from Everglades soil reveals novel genomic features of the ammonia-oxidizing archaea
Q36419196	Genome-enabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume
Q92665873	Genome-resolved metagenomics analysis provides insights into the ecological role of Thaumarchaeota in the Amazon River and its plume
Q22066321	Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum
Q36320710	Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea
Q33799855	Genomic signatures of fifth autotrophic carbon assimilation pathway in bathypelagic Crenarchaeota
Q51170837	GeoChip-based analysis of the functional gene diversity and metabolic potential of soil microbial communities of mangroves.
Q33857347	Geographic Distribution of Ammonia-Oxidizing Archaea along the Kuril Islands in the Western Subarctic Pacific
Q38293444	Geographic Distribution of Archaeal Ammonia Oxidizing Ecotypes in the Atlantic Ocean
Q34144049	Geographic specific coral-associated ammonia-oxidizing archaea in the northern Gulf of Eilat (Red Sea).
Q34349281	Global Biodiversity of Aquatic Ammonia-Oxidizing Archaea is Partitioned by Habitat
Q28706228	Global ecological pattern of ammonia-oxidizing archaea
Q36943487	Global occurrence of archaeal amoA genes in terrestrial hot springs
Q59464835	Glyphosate Applications, Glyphosate Resistant Corn, and Tillage on Nitrification Rates and Distribution of Nitrifying Microbial Communities
Q41200994	Growth of Nitrosococcus-Related Ammonia Oxidizing Bacteria Coincides with Extremely Low pH Values in Wastewater with High Ammonia Content
Q43024211	Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms
Q35128244	Habitat specialization along a wetland moisture gradient differs between ammonia-oxidizing and denitrifying microorganisms.
Q34443021	Habitat-associated phylogenetic community patterns of microbial ammonia oxidizers
Q35028693	Harnessing the power of microbial genomics for exploring exceptions and shifting perceptions
Q46761976	Heterotrophic bicarbonate assimilation is the main process of de novo organic carbon synthesis in hadal zone of the Hellenic Trench, the deepest part of Mediterranean Sea.
Q34524192	High abundances of potentially active ammonia-oxidizing bacteria and archaea in oligotrophic, high-altitude lakes of the Sierra Nevada, California, USA.
Q47802982	High dark inorganic carbon fixation rates by specific microbial groups in the Atlantic off the Galician coast (NW Iberian margin).
Q43529616	High diversity of ammonia-oxidizing archaea in permanent and seasonal oxygen-deficient waters of the eastern South Pacific
Q37110995	High rates of denitrification and nitrous oxide emission in arid biological soil crusts from the Sultanate of Oman
Q34531953	High-throughput analysis of ammonia oxidiser community composition via a novel, amoA-based functional gene array
Q37002351	Higher diversity of ammonia/ammonium-oxidizing prokaryotes in constructed freshwater wetland than natural coastal marine wetland
Q33332447	Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions
Q38610594	Hydrography shapes amoA containing Thaumarcheota in the coastal waters off central Chile
Q35538333	Identification and quantification of bacteria and archaea responsible for ammonia oxidation in different activated sludge of full-scale wastewater treatment plants.
Q54405081	Identification and quantitative evaluation of nitrogen-converting organisms in a full-scale leachate treatment plant
Q33235504	Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
Q34379345	Impact of different bioenergy crops on N-cycling bacterial and archaeal communities in soil
Q46760676	Impact of plant harvest management on function and community structure of nitrifiers and denitrifiers in a constructed wetland
Q34330695	Impact of short-term acidification on nitrification and nitrifying bacterial community dynamics in soilless cultivation media
Q35107641	Impacts of edaphic factors on communities of ammonia-oxidizing archaea, ammonia-oxidizing bacteria and nitrification in tropical soils
Q84465994	Impacts of organic and inorganic fertilizers on nitrification in a cold climate soil are linked to the bacterial ammonia oxidizer community
Q90204132	Indigenous Ammonia-Oxidizing Archaea in Oxic Subseafloor Oceanic Crust
Q37102418	Influence of ammonia oxidation rate on thaumarchaeal lipid composition and the TEX86 temperature proxy
Q35518281	Influence of edaphic and management factors on the diversity and abundance of ammonia-oxidizing thaumarchaeota and bacteria in soils of bioenergy crop cultivars
Q34654545	Influence of oxic/anoxic fluctuations on ammonia oxidizers and nitrification potential in a wet tropical soil.
Q44657811	Influence of oxygen availability on the activities of ammonia-oxidizing archaea
Q51665487	Influence of water quality on nitrifier regrowth in two full-scale drinking water distribution systems.
Q28603752	Inhabitancy of active Nitrosopumilus-like ammonia-oxidizing archaea and Nitrospira nitrite-oxidizing bacteria in the sponge Theonella swinhoei
Q35683438	Inhibition of bacterial ammonia oxidation by organohydrazines in soil microcosms
Q36074973	Inhibition of methane oxidation by nitrogenous fertilizers in a paddy soil
Q39219861	Initial copper stress strengthens the resistance of soil microorganisms to a subsequent copper stress
Q56434811	Insights into the role of plant on ammonia-oxidizing bacteria and archaea in the mangrove ecosystem
Q28755113	Intact membrane lipids of "Candidatus Nitrosopumilus maritimus," a cultivated representative of the cosmopolitan mesophilic group I Crenarchaeota
Q34674475	Integrated metagenomic and physiochemical analyses to evaluate the potential role of microbes in the sand filter of a drinking water treatment system
Q39414592	Integrated structural biology and molecular ecology of N-cycling enzymes from ammonia-oxidizing archaea.
Q34594256	Internal porosity of mineral coating supports microbial activity in rapid sand filters for groundwater treatment
Q33479981	Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing.
Q92572994	Isolation and characterization of a thermophilic sulfur- and iron-reducing thaumarchaeote from a terrestrial acidic hot spring
Q36794230	Isolation of 'Candidatus Nitrosocosmicus franklandus', a novel ureolytic soil archaeal ammonia oxidiser with tolerance to high ammonia concentration
Q42016934	Land Spreading of Wastewaters from the Fruit-Packaging Industry and Potential Effects on Soil Microbes: Effects of the Antioxidant Ethoxyquin and Its Metabolites on Ammonia Oxidizers.
Q39554138	Latitudinal trends of Crenarchaeota and Bacteria in the meso- and bathypelagic water masses of the Eastern North Atlantic
Q33454285	Life without light: microbial diversity and evidence of sulfur- and ammonium-based chemolithotrophy in Movile Cave
Q53072403	Light and temperature control the seasonal distribution of thaumarchaeota in the South Atlantic bight.
Q87476090	Limitation of spatial distribution of ammonia-oxidizing microorganisms in the Haihe River, China, by heavy metals
Q33267435	Lineages of acidophilic archaea revealed by community genomic analysis
Q58781702	Linking Uncultivated Microbial Populations and Benthic Carbon Turnover by Using Quantitative Stable Isotope Probing
Q28762945	Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea
Q34656612	Linking isoprenoidal GDGT membrane lipid distributions with gene abundances of ammonia-oxidizing Thaumarchaeota and uncultured crenarchaeotal groups in the water column of a tropical lake (Lake Challa, East Africa).
Q90571649	Linking regional shifts in microbial genome adaptation with surface ocean biogeochemistry
Q38763695	Lipids as paleomarkers to constrain the marine nitrogen cycle
Q64234951	Long-Term Effects of Periodical Fires on Archaeal Communities from Brazilian Cerrado Soils
Q58573067	Long-Term Nitrogen Fertilization Elevates the Activity and Abundance of Nitrifying and Denitrifying Microbial Communities in an Upland Soil: Implications for Nitrogen Loss From Intensive Agricultural Systems
Q39817400	Low genome content diversity of marine planktonic Thaumarchaeota
Q30481198	Low temperature decreases the phylogenetic diversity of ammonia-oxidizing archaea and bacteria in aquarium biofiltration systems
Q28727259	Low-ammonia niche of ammonia-oxidizing archaea in rotating biological contactors of a municipal wastewater treatment plant
Q35530713	Low-dissolved-oxygen nitrifying systems exploit ammonia-oxidizing bacteria with unusually high yields.
Q35763695	Macroecological patterns of archaeal ammonia oxidizers in the Atlantic Ocean.
Q34889508	Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic
Q46255128	Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation.
Q50480278	Manure fertilization alters the population of ammonia-oxidizing bacteria rather than ammonia-oxidizing archaea in a paddy soil.
Q33799830	Marine Group II Dominates Planktonic Archaea in Water Column of the Northeastern South China Sea.
Q41525333	Marine Microbial Gene Abundance and Community Composition in Response to Ocean Acidification and Elevated Temperature in Two Contrasting Coastal Marine Sediments
Q58113447	Marine N2 O Emissions From Nitrification and Denitrification Constrained by Modern Observations and Projected in Multimillennial Global Warming Simulations
Q30586815	Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation.
Q38668197	Marine archaeal dynamics and interactions with the microbial community over 5 years from surface to seafloor.
Q35109503	Marine bacterioplankton community turnover within seasonally hypoxic waters of a subtropical sound: Devil's Hole, Bermuda.
Q40477850	Measuring unbiased metatranscriptomics in suboxic waters of the central Baltic Sea using a new in situ fixation system
Q92667415	Membrane Lipid Composition of the Moderately Thermophilic Ammonia-Oxidizing Archaeon "Candidatus Nitrosotenuis uzonensis" at Different Growth Temperatures
Q36098185	Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones.
Q94671803	Metagenome-assembled genomes reveal unique metabolic adaptations of a basal marine Thaumarchaeota lineage
Q55242479	Metagenomic Insights Into the Microbial Community and Nutrient Cycling in the Western Subarctic Pacific Ocean.
Q42623632	Metagenomic analysis of a complex marine planktonic thaumarchaeal community from the Gulf of Maine
Q35229233	Metagenomic analysis reveals microbial diversity and function in the rhizosphere soil of a constructed wetland
Q33576801	Metagenomic profiling of a microbial assemblage associated with the California mussel: a node in networks of carbon and nitrogen cycling
Q33299483	Metagenomics of the deep Mediterranean, a warm bathypelagic habitat
Q30500794	Metatranscriptomic analysis of ammonia-oxidizing organisms in an estuarine bacterioplankton assemblage.
Q33599792	Microbial Community Response on Wastewater Discharge in Boreal Lake Sediments
Q55436336	Microbial Diversity in Sediments from the Bottom of the Challenger Deep, the Mariana Trench.
Q36178895	Microbial Mat Compositional and Functional Sensitivity to Environmental Disturbance
Q39257791	Microbial N Transformations and N2O Emission after Simulated Grassland Cultivation: Effects of the Nitrification Inhibitor 3,4-Dimethylpyrazole Phosphate (DMPP).
Q94461355	Microbial Nitrogen Metabolism in Chloraminated Drinking Water Reservoirs
Q34725610	Microbial biogeochemistry of Boiling Springs Lake: a physically dynamic, oligotrophic, low-pH geothermal ecosystem.
Q91892286	Microbial community and geochemical analyses of trans-trench sediments for understanding the roles of hadal environments
Q24679586	Microbial community biofabrics in a geothermal mine adit
Q34597545	Microbial community biogeographic patterns in the rhizosphere of two Brazilian semi-arid leguminous trees
Q35910882	Microbial community changes along the active seepage site of one cold seep in the Red Sea.
Q35443555	Microbial community composition and diversity in Caspian Sea sediments.
Q60301806	Microbial community composition and diversity in the Indian Ocean deep sea REY-rich muds
Q34261246	Microbial community stratification controlled by the subseafloor fluid flow and geothermal gradient at the Iheya North hydrothermal field in the Mid-Okinawa Trough (Integrated Ocean Drilling Program Expedition 331)
Q34027982	Microbial community structure of relict niter-beds previously used for saltpeter production
Q64950801	Microbial community structure of soils in Bamenwan mangrove wetland.
Q50113965	Microbial dark matter investigations: how microbial studies transform biological knowledge and empirically sketch a logic of scientific discovery
Q28705120	Microbial diversity in the deep-subsurface hydrothermal aquifer feeding the giant gypsum crystal-bearing Naica Mine, Mexico
Q28743264	Microbial ecology of the dark ocean above, at, and below the seafloor
Q51181415	Microbial ecology: Metabolism of the deep.
Q31127986	Microbial oceanography: paradigms, processes and promise
Q34323558	Microbial survey of a full-scale, biologically active filter for treatment of drinking water
Q64068070	Microbiology and Nitrogen Cycle in the Benthic Sediments of a Glacial Oligotrophic Deep Andean Lake as Analog of Ancient Martian Lake-Beds
Q50107526	Microbiology: A fight for scraps of ammonia
Q36970300	Microprofiling of nitrogen patches in paddy soil: Analysis of spatiotemporal nutrient heterogeneity at the microscale
Q36805729	Microsite Differentiation Drives the Abundance of Soil Ammonia Oxidizing Bacteria along Aridity Gradients
Q34033931	Mimicking the oxygen minimum zones: stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system
Q33321581	Molecular analysis of enrichment cultures of ammonia oxidizers from the Salar de Huasco, a high altitude saline wetland in northern Chile
Q46897421	Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California.
Q34747021	Molecular biological and isotopic biogeochemical prognoses of the nitrification-driven dynamic microbial nitrogen cycle in hadopelagic sediments
Q33849401	Molecular characterization of activated sludge from a seawater-processing wastewater treatment plant
Q43365968	Molecular characterization of microbial populations in groundwater sources and sand filters for drinking water production
Q35001995	Molecular diversity of the ammonia-oxidizing bacteria community in disused tin-mining ponds located within Kampar, Perak, Malaysia
Q36566112	Molecular tools for the detection of nitrogen cycling Archaea.
Q39608083	Multiple factors affect diversity and abundance of ammonia-oxidizing microorganisms in iron mine soil
Q36212485	N2O emission characteristics and its affecting factors in rain-fed potato fields in Wuchuan County, China
Q28067788	New Dimensions in Microbial Ecology-Functional Genes in Studies to Unravel the Biodiversity and Role of Functional Microbial Groups in the Environment
Q35309765	New insights into how increases in fertility improve the growth of rice at the seedling stage in red soil regions of subtropical China
Q57899871	New perspectives in benthic deep-sea microbial ecology
Q34008413	New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation.
Q90401035	Niche Differentiation of Aerobic and Anaerobic Ammonia Oxidizers in a High Latitude Deep Oxygen Minimum Zone
Q60949757	Niche Separation of Ammonia Oxidizers in Mudflat and Agricultural Soils Along the Yangtze River, China
Q35101005	Niche differentiation of ammonia-oxidising archaea (AOA) and bacteria (AOB) in response to paper and pulp mill effluent.
Q34004500	Niche partitioning of marine group I Crenarchaeota in the euphotic and upper mesopelagic zones of the East China Sea.
Q28742300	Niche segregation of ammonia-oxidizing archaea and anammox bacteria in the Arabian Sea oxygen minimum zone
Q37650417	Niche specialization of novel Thaumarchaeota to oxic and hypoxic acidic geothermal springs of Yellowstone National Park
Q46846684	Niche specificity of ammonia-oxidizing archaeal and bacterial communities in a freshwater wetland receiving municipal wastewater in Daqing, Northeast China
Q31105894	Nitric oxide and nitrous oxide turnover in natural and engineered microbial communities: biological pathways, chemical reactions, and novel technologies.
Q41050237	Nitrification Is a Primary Driver of Nitrous Oxide Production in Laboratory Microcosms from Different Land-Use Soils
Q35863940	Nitrification and Nitrifying Bacteria in a Coastal Microbial Mat
Q27321778	Nitrification and its influence on biogeochemical cycles from the equatorial Pacific to the Arctic Ocean
Q57238178	Nitrification driven by bacteria and not archaea in nitrogen-rich grassland soils
Q54215598	Nitrification in lake sediment with addition of drinking water treatment residuals.
Q49463723	Nitrifier Gene Abundance and Diversity in Sediments Impacted by Acid Mine Drainage.
Q42654206	Nitrogen Loss from Pristine Carbonate-Rock Aquifers of the Hainich Critical Zone Exploratory (Germany) Is Primarily Driven by Chemolithoautotrophic Anammox Processes
Q33603408	Nitrogen Metabolism Genes from Temperate Marine Sediments
Q37173708	Nitrogen and Oxygen Isotope Effects of Ammonia Oxidation by Thermophilic Thaumarchaeota from a Geothermal Water Stream
Q45781990	Nitrogen and phosphorus enrichment alter the composition of ammonia-oxidizing bacteria in salt marsh sediments.
Q43355328	Nitrogen cycling and relationships between ammonia oxidizers and denitrifiers in a clay-loam soil.
Q57238268	Nitrogen cycling in the secondary nitrite maximum of the eastern tropical North Pacific off Costa Rica
Q57238152	Nitrogen loading levels affect abundance and composition of soil ammonia oxidizing prokaryotes in semiarid temperate grassland
Q43361682	Nitrogen removal and its relationship with the nitrogen-cycle genes and microorganisms in the horizontal subsurface flow constructed wetlands with different design parameters
Q39414426	Nitrogen-cycling bacteria and archaea in the carbonate sediment of a coral reef.
Q30829634	Nitrososphaera viennensis gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon from soil and a member of the archaeal phylum Thaumarchaeota
Q90101502	Nitrosospira Cluster 8a Plays a Predominant Role in the Nitrification Process of a Subtropical Ultisol under Long-Term Inorganic and Organic Fertilization
Q37486938	Nitrous oxide as a function of oxygen and archaeal gene abundance in the North Pacific
Q33915573	Novel application of nitrifying bacterial consortia to ease ammonia toxicity in ornamental fish transport units: trials with zebrafish
Q46161183	Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep-sea hydrocarbon plume
Q46336141	Numerical Relationships Between Archaeal and Bacterial amoA Genes Vary by Icelandic Andosol Classes
Q57932705	Nutrient utilisation by shallow water temperate sponges in New Zealand
Q34377238	NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira.
Q41354776	Occurrence and abundance of ammonia-oxidizing archaea and bacteria from the surface to below the water table, in deep soil, and their contributions to nitrification
Q31159692	Occurrence and diversity of nitrite-dependent anaerobic methane oxidation bacteria in the sediments of the South China Sea revealed by amplification of both 16S rRNA and pmoA genes.
Q42122151	Occurrence of ammonia-oxidizing archaea in wastewater treatment plant bioreactors.
Q39241740	Optical properties of dissolved organic matter relate to different depth-specific patterns of archaeal and bacterial community structure in the North Atlantic Ocean
Q31167298	Oxygen availability and distance to surface environments determine community composition and abundance of ammonia-oxidizing prokaroytes in two superimposed pristine limestone aquifers in the Hainich region, Germany
Q35394139	Parent material and vegetation influence soil microbial community structure following 30-years of rock weathering and pedogenesis
Q34518017	Partaking of Archaea to biogeochemical cycling in oxygen-deficient zones of meromictic saline Lake Faro (Messina, Italy).
Q34487224	Partitioning of Thaumarchaeota populations along environmental gradients in high mountain lakes.
Q21563616	Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota
Q46522894	Pathways regulating the removal of nitrogen in planted and unplanted subsurface flow constructed wetlands
Q33324827	Phylogenetic and functional gene analysis of the bacterial and archaeal communities associated with the surface microlayer of an estuary
Q33574966	Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment
Q47794885	Phylogenetic diversity and distribution of bacterial and archaeal amoA genes in the East China Sea during spring.
Q33958238	Phylogenetic diversity and ecological pattern of ammonia-oxidizing archaea in the surface sediments of the western Pacific
Q37664494	Phylogenetic diversity of archaea and the archaeal ammonia monooxygenase gene in uranium mining-impacted locations in Bulgaria.
Q33843712	Phylogenetic ecology of widespread uncultured clades of the Kingdom Euryarchaeota
Q91525212	Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution
Q27322438	Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation
Q57211490	Picoplankton diversity in the Arctic Ocean and surrounding seas
Q36985124	Population Dynamics and Community Composition of Ammonia Oxidizers in Salt Marshes after the Deepwater Horizon Oil Spill
Q35624632	Potential for Nitrogen Fixation and Nitrification in the Granite-Hosted Subsurface at Henderson Mine, CO.
Q46281424	Potential impact of global climate change on benthic deep-sea microbes
Q34798540	Predominance of ammonia-oxidizing archaea and nirK-gene-bearing denitrifiers among ammonia-oxidizing and denitrifying populations in sediments of a large urban eutrophic lake (Lake Donghu).
Q39943910	Predominance of ammonia-oxidizing archaea on granular activated carbon used in a full-scale advanced drinking water treatment plant.
Q34422944	Predominance of thaumarchaeal ammonia oxidizer abundance and transcriptional activity in an acidic fen.
Q41823384	Presence and diversity of anammox bacteria in cold hydrocarbon-rich seeps and hydrothermal vent sediments of the Guaymas Basin
Q34722099	Primary producing prokaryotic communities of brine, interface and seawater above the halocline of deep anoxic lake L'Atalante, Eastern Mediterranean Sea.
Q46533004	Priming effects of the endophytic fungus Phomopsis liquidambari on soil mineral N transformations
Q35758583	Probing nitrogen metabolism in the redox gradient of the Black Sea
Q36709234	Prokaryotic lifestyles in deep sea habitats
Q34577639	Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: a basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids
Q39560750	Putative archaeal viruses from the mesopelagic ocean
Q28728889	Quantification of ammonia oxidation rates and the distribution of ammonia-oxidizing Archaea and Bacteria in marine sediment depth profiles from Catalina Island, California
Q35025035	Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon.
Q33799352	Quantitative analyses of ammonia-oxidizing Archaea and bacteria in the sediments of four nitrogen-rich wetlands in China
Q39807882	Quantitative analyses of the abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea of a Chinese upland red soil under long-term fertilization practices
Q28828275	Quantitative and compositional responses of ammonia-oxidizing archaea and bacteria to long-term field fertilization
Q43320242	Quantitative response relationships between nitrogen transformation rates and nitrogen functional genes in a tidal flow constructed wetland under C/N ratio constraints
Q56555778	RETRACTED: Archaeal amoA genes outnumber bacterial amoA genes in municipal wastewater treatment plants in Bangkok
Q33963289	RNA-based investigation of ammonia-oxidizing archaea in hot springs of Yunnan Province, China
Q33919307	Rapid and dissimilar response of ammonia oxidizing archaea and bacteria to nitrogen and water amendment in two temperate forest soils
Q38619085	Rapid peat accumulation favours the occurrence of both fen and bog microbial communities within a Mediterranean, free-floating peat island
Q28830220	Reconstructing the Genetic Potential of the Microbially-Mediated Nitrogen Cycle in a Salt Marsh Ecosystem
Q43333383	Relationship between respiratory quotient, nitrification, and nitrous oxide emissions in a forced aerated composting process.
Q38298923	Relationships between protein-encoding gene abundance and corresponding process are commonly assumed yet rarely observed
Q59354510	Relative Abundance of Ammonia Oxidizers, Denitrifiers, and Anammox Bacteria in Sediments of Hyper-Nutrified Estuarine Tidal Flats and in Relation to Environmental Conditions
Q33599715	Relevance of a crenarchaeotal subcluster related to Candidatus Nitrosopumilus maritimus to ammonia oxidation in the suboxic zone of the central Baltic Sea.
Q34096839	Reliability of CARD-FISH procedure for enumeration of Archaea in deep-sea surficial sediments.
Q46336131	Research trends and hotspots related to ammonia oxidation based on bibliometric analysis
Q57176266	Resistant ammonia-oxidizing archaea endure, but adapting ammonia-oxidizing bacteria thrive in boreal lake sediments receiving nutrient-rich effluents
Q52624508	Response of Nitrifier and Denitrifier Abundance and Microbial Community Structure to Experimental Warming in an Agricultural Ecosystem.
Q92712100	Response of ammonia-oxidizing Bacteria and Archaea to long-term saline water irrigation in alluvial grey desert soils
Q40172312	Response of ammonia-oxidizing archaea and bacteria to long-term industrial effluent-polluted soils, Gujarat, Western India
Q30995121	Response of archaeal communities in the rhizosphere of maize and soybean to elevated atmospheric CO2 concentrations
Q35017000	Response of the abundance of key soil microbial nitrogen-cycling genes to multi-factorial global changes
Q93115399	Responses of Active Ammonia Oxidizers and Nitrification Activity in Eutrophic Lake Sediments to Nitrogen and Temperature
Q33768160	Responses of ammonia-oxidizing bacterial and archaeal populations to organic nitrogen amendments in low-nutrient groundwater
Q34496638	Responses of community structure of amoA-encoding archaea and ammonia-oxidizing bacteria in ammonia biofilter with rockwool mixtures to the gradual increases in ammonium and nitrate.
Q37232890	Responses of soil hydrolytic enzymes, ammonia-oxidizing bacteria and archaea to nitrogen applications in a temperate grassland in Inner Mongolia
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P819	ADS bibcode	2005PNAS..10214683F
P356	DOI	10.1073/PNAS.0506625102
P932	PMC publication ID	1253578
P698	PubMed publication ID	16186488
P5875	ResearchGate publication ID	7578893

P50	author	Alyson E Santoro	Q41953028
		Christopher A Francis	Q57010842
P2093	author name string	Brian B Oakley
		J Michael Beman
		Kathryn J Roberts
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P433	issue	41
P407	language of work or name	English	Q1860
P921	main subject	Archaea	Q10872
		biodiversity	Q47041
P304	page(s)	14683-14688
P577	publication date	2005-09-26
P1433	published in	Proceedings of the National Academy of Sciences of the United States of America	Q1146531
P1476	title	Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
P478	volume	102

Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean.

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