Reverse transcriptase in motion: conformational dynamics of enzyme-substrate interactions

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Reverse transcriptase in motion: conformational dynamics of enzyme-substrate interactions is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1016/J.BBAPAP.2009.07.020
P8608Fatcat IDrelease_m5dwqydejjhkja6f7zmhwo4pgq
P932PMC publication ID2930377
P698PubMed publication ID19665597
P5875ResearchGate publication ID26727477

P50authorStefan G. SarafianosQ30505408
P2093author name stringJason W Rausch
Stuart F J Le Grice
Matthias Götte
Bruno Marchand
P2860cites workAttenuation of DNA replication by HIV-1 reverse transcriptase near the central termination sequenceQ81608769
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Crystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA:DNAQ24545723
Crystal structure of the protein serine/threonine phosphatase 2C at 2.0 A resolutionQ24561750
RNase H activity: structure, specificity, and function in reverse transcriptionQ24643032
Stable complexes formed by HIV-1 reverse transcriptase at distinct positions on the primer-template controlled by binding deoxynucleoside triphosphates or foscarnetQ24682670
Structures of HIV-1 reverse transcriptase with pre- and post-translocation AZTMP-terminated DNA.Q27640046
HIV-1 Reverse Transcriptase Structure with RNase H Inhibitor Dihydroxy Benzoyl Naphthyl Hydrazone Bound at a Novel SiteQ27640888
Structure of human RNase H1 complexed with an RNA/DNA hybrid: insight into HIV reverse transcriptionQ27648911
The structure of unliganded reverse transcriptase from the human immunodeficiency virus type 1Q27729415
Structure of unliganded HIV-1 reverse transcriptase at 2.7 A resolution: implications of conformational changes for polymerization and inhibition mechanismsQ27733392
Structure of a covalently trapped catalytic complex of HIV-1 reverse transcriptase: implications for drug resistanceQ27766086
Structure and functional implications of the polymerase active site region in a complex of HIV-1 RT with a double-stranded DNA template-primer and an antibody Fab fragment at 2.8 A resolutionQ27766103
Long-term foscarnet therapy remodels thymidine analogue mutations and alters resistance to zidovudine and lamivudine in HIV-1Q28307524
Mechanism and fidelity of HIV reverse transcriptaseQ28646717
Reverse transcriptase.RNase H from the human immunodeficiency virus. Relationship of the DNA polymerase and RNA hydrolysis activitiesQ28646746
Analysis of plus-strand primer selection, removal, and reutilization by retroviral reverse transcriptases.Q55034092
Mechanism of inhibition of HIV-1 reverse transcriptase by nonnucleoside inhibitors.Q55063317
Substituting a conserved residue of the ribonuclease H domain alters substrate hydrolysis by retroviral reverse transcriptaseQ73174664
Nucleotide-induced stable complex formation by HIV-1 reverse transcriptaseQ73343560
Temporal coordination between initiation of HIV (+)-strand DNA synthesis and primer removalQ77298456
HIV-1 reverse transcriptase plus-strand initiation exhibits preferential sensitivity to non-nucleoside reverse transcriptase inhibitors in vitroQ79436291
The sequence features important for plus strand priming by human immunodeficiency virus type 1 reverse transcriptaseQ28646831
Crystal structure at 3.5 A resolution of HIV-1 reverse transcriptase complexed with an inhibitorQ29547710
DNA polymerases: structural diversity and common mechanismsQ29619403
Crystal structure of human immunodeficiency virus type 1 reverse transcriptase complexed with double-stranded DNA at 3.0 A resolution shows bent DNAQ29620616
A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.Q30477242
YADD mutants of human immunodeficiency virus type 1 and Moloney murine leukemia virus reverse transcriptase are resistant to lamivudine triphosphate (3TCTP) in vitro.Q33842803
The role of steric hindrance in 3TC resistance of human immunodeficiency virus type-1 reverse transcriptase.Q33907523
Direct observation of one-dimensional diffusion and transcription by Escherichia coli RNA polymeraseQ34171591
RNA-dependent DNA polymerase in virions of RNA tumour virusesQ34206460
Recognition of internal cleavage sites by retroviral RNases H.Q34366158
Crystal structures of clinically relevant Lys103Asn/Tyr181Cys double mutant HIV-1 reverse transcriptase in complexes with ATP and non-nucleoside inhibitor HBY 097.Q34575882
Probing transcription factor dynamics at the single-molecule level in a living cellQ34631575
Multiparameter single-molecule fluorescence spectroscopy reveals heterogeneity of HIV-1 reverse transcriptase:primer/template complexes.Q34761256
HIV-1 reverse transcriptase can simultaneously engage its DNA/RNA substrate at both DNA polymerase and RNase H active sites: implications for RNase H inhibitionQ34849844
Non-nucleoside HIV-1 reverse transcriptase inhibitors di-halo-indolyl aryl sulfones achieve tight binding to drug-resistant mutants by targeting the enzyme-substrate complexQ34872382
Specific Cleavages by RNase H Facilitate Initiation of Plus-Strand RNA Synthesis by Moloney Murine Leukemia VirusQ34976431
Indolopyridones inhibit human immunodeficiency virus reverse transcriptase with a novel mechanism of actionQ35185934
Unique progressive cleavage mechanism of HIV reverse transcriptase RNase HQ35360809
Purine analog substitution of the HIV-1 polypurine tract primer defines regions controlling initiation of plus-strand DNA synthesisQ35646719
Two proton transfers in the transition state for nucleotidyl transfer catalyzed by RNA- and DNA-dependent RNA and DNA polymerasesQ35721277
'Binding, bending and bonding': polypurine tract-primed initiation of plus-strand DNA synthesis in human immunodeficiency virusQ35796073
Sequence and structural determinants required for priming of plus-strand DNA synthesis by the human immunodeficiency virus type 1 polypurine tract.Q35866117
Zidovudine resistance is suppressed by mutations conferring resistance of human immunodeficiency virus type 1 to foscarnet.Q35870930
Effects of the translocation status of human immunodeficiency virus type 1 reverse transcriptase on the efficiency of excision of tenofovirQ35912746
Mutations in human immunodeficiency virus type 1 RNase H primer grip enhance 3'-azido-3'-deoxythymidine resistanceQ35914346
Binding and kinetic properties of HIV-1 reverse transcriptase markedly differ during initiation and elongation of reverse transcription.Q35917913
Crystallography and the design of anti-AIDS drugs: conformational flexibility and positional adaptability are important in the design of non-nucleoside HIV-1 reverse transcriptase inhibitorsQ35967899
Hydrolysis of RNA/DNA hybrids containing nonpolar pyrimidine isosteres defines regions essential for HIV type 1 polypurine tract selectionQ36160662
Effects of nucleotides and nucleotide analogue inhibitors of HIV-1 reverse transcriptase in a ratchet model of polymerase translocationQ36489299
The history of N-methanocarbathymidine: the investigation of a conformational concept leads to the discovery of a potent and selective nucleoside antiviral agentQ36490651
Structural probing of the HIV-1 polypurine tract RNA:DNA hybrid using classic nucleic acid ligandsQ36649670
Polypurine tract adjacent to the U3 region of the Rous sarcoma virus genome provides a cis-acting functionQ36923155
Mutations M184V and Y115F in HIV-1 reverse transcriptase discriminate against "nucleotide-competing reverse transcriptase inhibitors".Q36949351
Dynamic binding orientations direct activity of HIV reverse transcriptaseQ37126933
Slide into action: dynamic shuttling of HIV reverse transcriptase on nucleic acid substratesQ37278712
Human immunodeficiency virus type 1 reverse transcriptase: spatial and temporal relationship between the polymerase and RNase H activitiesQ37296280
High-resolution NMR analysis of the conformations of native and base analog substituted retroviral and LTR-retrotransposon PPT primersQ37310911
Effects of mutations in the connection and RNase H domains of HIV-1 reverse transcriptase on drug susceptibility.Q37353883
Using pyrrolo-deoxycytosine to probe RNA/DNA hybrids containing the human immunodeficiency virus type-1 3' polypurine tract.Q37518702
HIV-1 reverse transcriptase-associated RNase H cleaves RNA/RNA in arrested complexes: implications for the mechanism by which RNase H discriminates between RNA/RNA and RNA/DNAQ37694538
Use of an oligoribonucleotide containing the polypurine tract sequence as a primer by HIV reverse transcriptaseQ38288991
An expanded model of replicating human immunodeficiency virus reverse transcriptaseQ38296396
The pyrophosphate analogue foscarnet traps the pre-translocational state of HIV-1 reverse transcriptase in a Brownian ratchet model of polymerase translocationQ38307044
Polypurine tract primer generation and utilization by Moloney murine leukemia virus reverse transcriptaseQ38318070
Refined model for primer/template binding by HIV-1 reverse transcriptase: pre-steady-state kinetic analyses of primer/template binding and nucleotide incorporation events distinguish between different binding modes depending on the nature of the nucQ38320371
Investigating HIV-1 polypurine tract geometry via targeted insertion of abasic lesions in the (-)-DNA template and (+)-RNA primerQ38329151
Synthesis of DNA by human immunodeficiency virus reverse transcriptase is preferentially blocked at template oligo(deoxyadenosine) tractsQ38338653
Human immunodeficiency virus 1 reverse transcriptase. Template binding, processivity, strand displacement synthesis, and template switchingQ38345021
A model for the mechanism of polymerase translocationQ38349372
Helix structure and ends of RNA/DNA hybrids direct the cleavage specificity of HIV-1 reverse transcriptase RNase H.Q38362524
Localization of the active site of HIV-1 reverse transcriptase-associated RNase H domain on a DNA template using site-specific generated hydroxyl radicalsQ38552378
Facilitated target location in biological systemsQ38597415
In vitro inhibition of hepadnavirus polymerases by the triphosphates of BMS-200475 and lobucavir.Q39559675
RNA-primed initiation of Moloney murine leukemia virus plus strands by reverse transcriptase in vitroQ40133605
Quantitative analysis of RNA cleavage during RNAdirected DNA synthesis by human immunodeficiency and avian myeloblastosis virus reverse transcriptasesQ40401252
Determinants of the RNase H cleavage specificity of human immunodeficiency virus reverse transcriptaseQ40410001
Fixed conformation nucleoside analogs effectively inhibit excision-proficient HIV-1 reverse transcriptasesQ40484294
Experimental and structural evidence that herpes 1 kinase and cellular DNA polymerase(s) discriminate on the basis of sugar puckerQ40599894
Connection domain mutations N348I and A360V in HIV-1 reverse transcriptase enhance resistance to 3'-azido-3'-deoxythymidine through both RNase H-dependent and -independent mechanismsQ41262484
HIV-1 Reverse Transcription A Termination Step at the Center of the GenomeQ41443092
Delayed chain termination protects the anti-hepatitis B virus drug entecavir from excision by HIV-1 reverse transcriptaseQ41503130
Nucleic acid polymerases use a general acid for nucleotidyl transferQ42239117
Novel nonnucleoside inhibitors that select nucleoside inhibitor resistance mutations in human immunodeficiency virus type 1 reverse transcriptaseQ42549637
Footprint analysis of replicating murine leukemia virus reverse transcriptaseQ43465096
Human immunodeficiency virus reverse transcriptase ribonuclease H: specificity of tRNALys3-primer excisionQ43662972
Polymerization and RNase H activities of the reverse transcriptases from avian myeloblastosis, human immunodeficiency, and Moloney murine leukemia viruses are functionally uncoupledQ43749171
Pre-existing distortions in nucleic acid structure aid polypurine tract selection by HIV-1 reverse transcriptaseQ43903247
Structures of HIV-1 RT-DNA complexes before and after incorporation of the anti-AIDS drug tenofovirQ44859710
Kinetic mechanism of the DNA-dependent DNA polymerase activity of human immunodeficiency virus reverse transcriptaseQ45786646
Nuclease footprinting of human immunodeficiency virus reverse transcriptase/tRNA(Lys-3) complexesQ45786901
Characterization of reverse transcriptase and RNase H from friend-murine leukemia virusQ45826426
Plus-strand priming by Moloney murine leukemia virus. The sequence features important for cleavage by RNase H.Q45847036
Site-specific footprinting reveals differences in the translocation status of HIV-1 reverse transcriptase. Implications for polymerase translocation and drug resistanceQ47814140
The structural mechanism of translocation and helicase activity in T7 RNA polymeraseQ47964330
Visualization of single molecules of RNA polymerase sliding along DNA.Q54647002
P433issue5
P407language of work or nameEnglishQ1860
P304page(s)1202-1212
P577publication date2009-08-07
P1433published inBiochimica et Biophysica ActaQ864239
P1476titleReverse transcriptase in motion: conformational dynamics of enzyme-substrate interactions
P478volume1804

Reverse relations

cites work (P2860)
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Q34352431The N348I mutation at the connection subdomain of HIV-1 reverse transcriptase decreases binding to nevirapine.
Q47145836The mechano-chemistry of a monomeric reverse transcriptase

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