| scholarly article | Q13442814 |
| P50 | author | Xiaozeng Yang | Q57207497 |
| P2093 | author name string | Lei Li | |
| Xiangfeng Wang | |||
| Huiyong Zhang | |||
| Hang He | |||
| Xuncheng Wang | |||
| Xing W Deng | |||
| P2860 | cites work | Characterization and identification of microRNA core promoters in four model species | Q21092578 |
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| Core transcriptional regulatory circuitry in human embryonic stem cells | Q24322016 | ||
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| MicroRNA genes are transcribed by RNA polymerase II | Q24562649 | ||
| MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals | Q24680274 | ||
| AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors | Q24790976 | ||
| Genome wide analysis of Arabidopsis core promoters | Q24801832 | ||
| miRU: an automated plant miRNA target prediction server | Q24812296 | ||
| Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana | Q27860555 | ||
| Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans | Q27860584 | ||
| Asymmetry in the assembly of the RNAi enzyme complex | Q27860763 | ||
| The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14 | Q27860849 | ||
| Functional siRNAs and miRNAs Exhibit Strand Bias | Q27861038 | ||
| Transcriptional regulatory code of a eukaryotic genome | Q27933887 | ||
| Origin, biogenesis, and activity of plant microRNAs | Q28236171 | ||
| MicroRNAS and their regulatory roles in plants | Q28237934 | ||
| Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs | Q28246401 | ||
| High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes | Q28763700 | ||
| Network motifs: simple building blocks of complex networks | Q29547340 | ||
| Network motifs in the transcriptional regulation network of Escherichia coli | Q29547342 | ||
| BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks | Q29547427 | ||
| The evolution of gene regulation by transcription factors and microRNAs | Q29617552 | ||
| Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes | Q29617994 | ||
| Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs | Q29618428 | ||
| Expression of Arabidopsis MIRNA genes | Q33220242 | ||
| Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments | Q33259453 | ||
| Global and local architecture of the mammalian microRNA-transcription factor regulatory network. | Q33290828 | ||
| Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends | Q33341604 | ||
| Genome-wide survey of microRNA-transcription factor feed-forward regulatory circuits in human. | Q33968199 | ||
| Widespread translational inhibition by plant miRNAs and siRNAs | Q34011733 | ||
| From seed to seed: the role of photoreceptors in Arabidopsis development | Q34223030 | ||
| Photosensory perception and signalling in plant cells: new paradigms? | Q34560894 | ||
| Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis | Q34562910 | ||
| The Arabidopsis HY5 gene encodes a bZIP protein that regulates stimulus-induced development of root and hypocotyl | Q35196441 | ||
| A core transcriptional network for early mesoderm development in Drosophila melanogaster | Q35649396 | ||
| Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis | Q35776570 | ||
| Transcription factor modularity in a gene-centered C. elegans core neuronal protein-DNA interaction network | Q35854821 | ||
| Genomic studies of transcription factor-DNA interactions | Q36035029 | ||
| MicroRNA biogenesis and function in plants | Q36250139 | ||
| Analysis of regulatory network topology reveals functionally distinct classes of microRNAs. | Q36972112 | ||
| Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana | Q37259056 | ||
| Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction | Q37645904 | ||
| TileMap: create chromosomal map of tiling array hybridizations | Q38323129 | ||
| Transcription factor families in Arabidopsis: major progress and outstanding issues for future research | Q40302410 | ||
| MicroRNA promoter element discovery in Arabidopsis | Q42135770 | ||
| MicroRNA-regulated feed forward loop network | Q42259460 | ||
| A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity. | Q42751771 | ||
| Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light | Q44134078 | ||
| Phenotypic and Genetic Analysis of det2, a New Mutant That Affects Light-Regulated Seedling Development in Arabidopsis | Q46441391 | ||
| Hematopoietic lineage commitment: miRNAs add specificity to a widely expressed transcription factor | Q46551904 | ||
| DNA-binding study identifies C-box and hybrid C/G-box or C/A-box motifs as high-affinity binding sites for STF1 and LONG HYPOCOTYL5 proteins. | Q46743899 | ||
| A gene-centered C. elegans protein-DNA interaction network | Q47594680 | ||
| The Arabidopsis transcription factor HY5 integrates light and hormone signaling pathways. | Q47781823 | ||
| Molecular interaction between COP1 and HY5 defines a regulatory switch for light control of Arabidopsis development | Q47862834 | ||
| HY5 is a point of convergence between cryptochrome and cytokinin signalling pathways in Arabidopsis thaliana. | Q49064844 | ||
| PIF3 regulates anthocyanin biosynthesis in an HY5-dependent manner with both factors directly binding anthocyanin biosynthetic gene promoters in Arabidopsis. | Q50704106 | ||
| Regulatory hierarchy of photomorphogenic loci: allele-specific and light-dependent interaction between the HY5 and COP1 loci. | Q50773216 | ||
| Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. | Q51581242 | ||
| Light regulated modulation of Z-box containing promoters by photoreceptors and downstream regulatory components, COP1 and HY5, in Arabidopsis. | Q52115021 | ||
| Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. | Q52187248 | ||
| P433 | issue | 3 | |
| P304 | page(s) | 346-358 | |
| P577 | publication date | 2010-12-30 | |
| P1433 | published in | The Plant Journal | Q15766987 |
| P1476 | title | Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post-transcriptional regulation | |
| P478 | volume | 65 |
| Q45954381 | A CRY-BIC negative-feedback circuitry regulating blue light sensitivity of Arabidopsis. |
| Q48158871 | A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis |
| Q104581375 | A Positive Feedback Loop of BBX11-BBX21-HY5 Promotes Photomorphogenic Development in Arabidopsis |
| Q48184390 | A comparative transcriptome analysis of a wild purple potato and its red mutant provides insight into the mechanism of anthocyanin transformation. |
| Q38933339 | A matter of time - How transient transcription factor interactions create dynamic gene regulatory networks |
| Q34574930 | A quartet of PIF bHLH factors provides a transcriptionally centered signaling hub that regulates seedling morphogenesis through differential expression-patterning of shared target genes in Arabidopsis. |
| Q33569330 | A survey of the small RNA population during far-red light-induced apical hook opening |
| Q36290469 | Altered expression profiles of microRNA families during de-etiolation of maize and rice leaves |
| Q30454935 | Alternative mRNA processing increases the complexity of microRNA-based gene regulation in Arabidopsis |
| Q47265556 | An upstream regulator of the 26S proteasome modulates organ size in Arabidopsis thaliana. |
| Q48251497 | Ancestral light and chloroplast regulation form the foundations for C4 gene expression |
| Q50745793 | Antagonistic basic helix-loop-helix/bZIP transcription factors form transcriptional modules that integrate light and reactive oxygen species signaling in Arabidopsis. |
| Q50500500 | Arabidopsis FHY3 and HY5 positively mediate induction of COP1 transcription in response to photomorphogenic UV-B light. |
| Q48311988 | Arabidopsis Phytochrome A Directly Targets Numerous Promoters for Individualized Modulation of Genes in a Wide Range of Pathways. |
| Q37086634 | BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation |
| Q92110317 | Beyond the darkness: recent lessons from etiolation and de-etiolation studies |
| Q46832734 | Both PHYTOCHROME RAPIDLY REGULATED1 (PAR1) and PAR2 promote seedling photomorphogenesis in multiple light signaling pathways. |
| Q34381021 | CAM7 and HY5 genetically interact to regulate root growth and abscisic acid responses |
| Q39303649 | Casting Away the Shadows: Elucidating the Role of Light-mediated Posttranscriptional Control in Plants |
| Q38289618 | Chemical-Induced Inhibition of Blue Light-Mediated Seedling Development Caused by Disruption of Upstream Signal Transduction Involving Cryptochromes in Arabidopsis thaliana |
| Q89837935 | Chimeric Activators and Repressors Define HY5 Activity and Reveal a Light-Regulated Feedback Mechanism |
| Q39577637 | Citrullus colocynthis NAC transcription factors CcNAC1 and CcNAC2 are involved in light and auxin signaling |
| Q36104408 | Combinatorial complexity in a transcriptionally centered signaling hub in Arabidopsis. |
| Q35962414 | Comparative RNA-Seq Analysis Reveals That Regulatory Network of Maize Root Development Controls the Expression of Genes in Response to N Stress |
| Q49188441 | Constitutive Expression of miR408 Improves Biomass and Seed Yield in Arabidopsis. |
| Q35105778 | Convergence of Light and ABA signaling on the ABI5 promoter. |
| Q38665417 | Crosstalk between Photoreceptor and Sugar Signaling Modulates Floral Signal Transduction |
| Q39065404 | Dancing in the dark: darkness as a signal in plants. |
| Q33880643 | Dissection of HY5/HYH expression in Arabidopsis reveals a root-autonomous HY5-mediated photomorphogenic pathway. |
| Q36634206 | Diurnal and light regulation of sulphur assimilation and glucosinolate biosynthesis in Arabidopsis |
| Q45909523 | Diurnal regulation of the floral scent emission by light and circadian rhythm in the Phalaenopsis orchids. |
| Q55113172 | Dynamic Modeling of Indole Glucosinolate Hydrolysis and Its Impact on Auxin Signaling |
| Q47917486 | Dynamics of the shade-avoidance response in Arabidopsis. |
| Q39284930 | Evolution of variety-specific regulatory schema for expression of osa-miR408 in indica rice varieties under drought stress |
| Q36012540 | Exploring miRNAs involved in blue/UV-A light response in Brassica rapa reveals special regulatory mode during seedling development |
| Q50102203 | Far-Red Light Detection in the Shoot Regulates Lateral Root Development through the HY5 Transcription Factor. |
| Q39633438 | Feedback Regulation of ABA Signaling and Biosynthesis by a bZIP Transcription Factor Targets Drought-Resistance-Related Genes. |
| Q50528544 | Genome-wide binding site analysis of FAR-RED ELONGATED HYPOCOTYL3 reveals its novel function in Arabidopsis development. |
| Q26825443 | Genomic basis for light control of plant development |
| Q34430370 | HUA ENHANCER1 is involved in posttranscriptional regulation of positive and negative regulators in Arabidopsis photomorphogenesis |
| Q46804944 | HY5 regulates anthocyanin biosynthesis by inducing the transcriptional activation of the MYB75/PAP1 transcription factor in Arabidopsis |
| Q36481417 | HY5 regulates nitrite reductase 1 (NIR1) and ammonium transporter1;2 (AMT1;2) in Arabidopsis seedlings |
| Q37682313 | HY5, a positive regulator of light signaling, negatively controls the unfolded protein response in Arabidopsis. |
| Q53430756 | Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum. |
| Q26824441 | Hormonal networks involved in apical hook development in darkness and their response to light |
| Q38893091 | Hormone-controlled UV-B responses in plants. |
| Q30456379 | Identification and analysis of the proximal promoters of microRNA genes in Arabidopsis |
| Q97529354 | Identification of BBX proteins as rate-limiting cofactors of HY5 |
| Q35239779 | Integration of low temperature and light signaling during cold acclimation response in Arabidopsis |
| Q27003303 | Interaction of light and temperature signalling |
| Q92539165 | Light Control of Salt-Induced Proline Accumulation Is Mediated by ELONGATED HYPOCOTYL 5 in Arabidopsis |
| Q39031312 | Light Regulation of Alternative Pre-mRNA Splicing in Plants. |
| Q47903803 | Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. |
| Q34060444 | Light-regulated gene repositioning in Arabidopsis |
| Q46373698 | Mass Spectrometric Analyses Reveal a Central Role for Ubiquitylation in Remodeling the Arabidopsis Proteome during Photomorphogenesis. |
| Q30301103 | MicroRNA408 is critical for the HY5-SPL7 gene network that mediates the coordinated response to light and copper |
| Q92241374 | MicroRNA858-mediated regulation of anthocyanin biosynthesis in kiwifruit (Actinidia arguta) based on small RNA sequencing |
| Q37100240 | Molecular interaction of bZIP domains of GBF1, HY5 and HYH in Arabidopsis seedling development |
| Q36122156 | Molecular interactions of GBF1 with HY5 and HYH proteins during light-mediated seedling development in Arabidopsis thaliana |
| Q36148269 | NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana |
| Q38642371 | OsbZIP48, a HY5 transcription factor ortholog, exerts pleiotropic effects in light-regulated development. |
| Q43634116 | PHYTOCHROME INTERACTING FACTOR1 Enhances the E3 Ligase Activity of CONSTITUTIVE PHOTOMORPHOGENIC1 to Synergistically Repress Photomorphogenesis in Arabidopsis |
| Q48199872 | PIF1-Interacting Transcription Factors and Their Binding Sequence Elements Determine the in Vivo Targeting Sites of PIF1. |
| Q50511138 | Phosphorylation of FAR-RED ELONGATED HYPOCOTYL1 is a key mechanism defining signaling dynamics of phytochrome A under red and far-red light in Arabidopsis. |
| Q35952836 | Photomorphogenesis |
| Q39128575 | Photomorphogenic responses to ultraviolet-B light. |
| Q34060638 | Photoreceptor partner FHY1 has an independent role in gene modulation and plant development under far-red light |
| Q35710519 | Phytochrome signaling mechanisms |
| Q60948831 | RSM1, an Arabidopsis MYB protein, interacts with HY5/HYH to modulate seed germination and seedling development in response to abscisic acid and salinity |
| Q33624779 | Regulation of Anthocyanin Biosynthesis in Purple Leaves of Zijuan Tea (Camellia sinensis var. kitamura). |
| Q48096322 | SHORT HYPOCOTYL1 Encodes a SMARCA3-Like Chromatin Remodeling Factor Regulating Elongation. |
| Q30456371 | SQUAMOSA promoter binding protein-like7 regulated microRNA408 is required for vegetative development in Arabidopsis |
| Q48118810 | Short Hypocotyl in White Light1 Interacts with Elongated Hypocotyl5 (HY5) and Constitutive Photomorphogenic1 (COP1) and Promotes COP1-Mediated Degradation of HY5 during Arabidopsis Seedling Development |
| Q92431995 | Small RNA profiling in Pinus pinaster reveals the transcriptome of developing seeds and highlights differences between zygotic and somatic embryos |
| Q88194719 | TANDEM ZINC-FINGER/PLUS3 Is a Key Component of Phytochrome A Signaling |
| Q28083385 | Temporal aspects of copper homeostasis and its crosstalk with hormones |
| Q50746745 | The Arabidopsis B-BOX protein BBX25 interacts with HY5, negatively regulating BBX22 expression to suppress seedling photomorphogenesis. |
| Q51591777 | The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 subunit LHP1 function in concert to regulate the transcription of stress-responsive genes. |
| Q38196366 | The Arabidopsis thaliana hypocotyl, a model to identify and study control mechanisms of cellular expansion. |
| Q35186739 | The HY5-PIF regulatory module coordinates light and temperature control of photosynthetic gene transcription |
| Q37012649 | The UVR8 UV-B Photoreceptor: Perception, Signaling and Response. |
| Q35556438 | The bZIP transcription factor HY5 interacts with the promoter of the monoterpene synthase gene QH6 in modulating its rhythmic expression |
| Q43021681 | The bZIP transcription factor MdHY5 regulates anthocyanin accumulation and nitrate assimilation in apple |
| Q38987284 | The copper microRNAs |
| Q91792051 | The involvement of PybZIPa in light-induced anthocyanin accumulation via the activation of PyUFGT through binding to tandem G-boxes in its promoter |
| Q47422365 | The mediator complex subunit PFT1 interferes with COP1 and HY5 in the regulation of Arabidopsis light signaling |
| Q39471473 | The photomorphogenic factors UV-B RECEPTOR 1, ELONGATED HYPOCOTYL 5, and HY5 HOMOLOGUE are part of the UV-B signalling pathway in grapevine and mediate flavonol accumulation in response to the environment |
| Q30428203 | Transcriptome analysis of ectopic chloroplast development in green curd cauliflower (Brassica oleracea L. var. botrytis). |
| Q50035014 | Two B-box proteins regulate photomorphogenesis by oppositely modulating HY5 through their diverse C-terminal domains. |
| Q48104264 | UV-B irradiation differentially regulates terpene synthases and terpene content of peach. |
| Q27024939 | UV-B-induced photomorphogenesis in Arabidopsis |
| Q49039442 | UV-B-responsive association of the Arabidopsis bZIP transcription factor ELONGATED HYPOCOTYL5 with target genes, including its own promoter. |
| Q41111491 | Unraveling multifaceted contributions of small regulatory RNAs to photomorphogenic development in Arabidopsis |
| Q38407478 | Using the iPlant collaborative discovery environment. |
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