Mitochondrial genome evolution in species belonging to the Phialocephala fortinii s.l. - Acephala applanata species complex

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Mitochondrial genome evolution in species belonging to the Phialocephala fortinii s.l. - Acephala applanata species complex is …
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scholarly articleQ13442814

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P356DOI10.1186/1471-2164-13-166
P932PMC publication ID3434094
P698PubMed publication ID22559219
P5875ResearchGate publication ID224911809

P50authorChristoph R. GrünigQ36524874
P2093author name stringRémy Bruggmann
Stefan Zoller
Matthias Bernt
Angelo Duò
P2860cites workRecent dermatophyte divergence revealed by comparative and phylogenetic analysis of mitochondrial genomesQ21283762
Mitochondrial evolutionQ22065556
Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorumQ22065726
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Inheritance and recombination of mitochondrial genomes in plants, fungi and animalsQ28272014
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Molecular and phenotypic description of the widespread root symbiont Acephala applanata gen. et sp. nov., formerly known as dark-septate endophyte type 1.Q31028457
Nucleotide sequences and functional characterization of two tobacco UAG suppressor tRNA(Gln) isoacceptors and their genesQ31949177
Prospects for fungus identification using CO1 DNA barcodes, with Penicillium as a test case.Q33278671
Assignment of species rank to six reproductively isolated cryptic species of the Phialocephala fortinii s.1.-Acephala applanata species complexQ33335745
Phylogeny of Phaeomollisia piceae gen. sp. nov.: a dark, septate, conifer-needle endophyte and its relationships to Phialocephala and AcephalaQ33385045
Diversity of root-associated fungal endophytes in Rhododendron fortunei in subtropical forests of ChinaQ33435396
Phylogenetic and biogeographic implications inferred by mitochondrial intergenic region analyses and ITS1-5.8S-ITS2 of the entomopathogenic fungi Beauveria bassiana and B. brongniartiiQ33606184
Progress towards DNA barcoding of fungiQ33897158
Cloning of opal suppressor tRNA genes of a filamentous fungus reveals two tRNASerUGA genes with unexpected structural differencesQ33932124
A coalescent estimator of the population recombination rateQ33969654
Misreading of termination codons in eukaryotes by natural nonsense suppressor tRNAsQ34001416
The complete DNA sequence of the mitochondrial genome of Podospora anserina.Q34036323
Inference of the phylogenetic position of the phylum Deferribacteres from gene order comparisonQ34131077
Cloning and nucleotide sequencing of the genes rimI and rimJ which encode enzymes acetylating ribosomal proteins S18 and S5 of Escherichia coli K12.Q34553172
Reduced extension temperatures required for PCR amplification of extremely A+T-rich DNA.Q34594003
Mitochondrial DNA in metazoa: degree of freedom in a frozen eventQ34594183
Probable presence of an ubiquitous cryptic mitochondrial gene on the antisense strand of the cytochrome oxidase I geneQ35544208
Mitochondrial genomes: anything goesQ35595038
Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangementsQ35888796
Gene order comparisons for phylogenetic inference: evolution of the mitochondrial genomeQ37111902
Evaluation of next generation sequencing platforms for population targeted sequencing studiesQ37213808
Control of mitochondrial gene expression in Saccharomyces cerevisiaeQ37794734
Infrequent genetic exchange and recombination in the mitochondrial genome of Candida albicans.Q39502214
Wheat cytoplasmic arginine tRNA isoacceptor with a U*CG anticodon is an efficient UGA suppressor in vitroQ39723241
Silent mitochondrial and active nuclear genes for subunit 2 of cytochrome c oxidase (cox2) in soybean: evidence for RNA-mediated gene transferQ41537314
Suitability of methods for species recognition in the Phialocephala fortinii-Acephala applanata species complex using DNA analysisQ42611739
Genes within genes: multiple LAGLIDADG homing endonucleases target the ribosomal protein S3 gene encoded within an rnl group I intron of Ophiostoma and related taxaQ42627519
Mitochondrial gene sequences alone or combined with ITS region sequences provide firm molecular criteria for the classification of Lecanicillium species.Q42656715
Optional mitochondrial introns and evidence for a homing-endonuclease gene in the mtDNA rnl gene in Ophiostoma ulmi s. lat.Q42673139
The phylogenetic placement of the non-phototrophic, Gram-positive thermophile ‘Thermobaculum terrenum’ and branching orders within the phylum ‘ Chloroflexi ’ inferred from gene order comparisonsQ42674902
Characterization of the mating type (MAT) locus in the Phialocephala fortinii s.l. -Acephala applanata species complexQ47382962
Microsatellite size homoplasies and null alleles do not affect species diagnosis and population genetic analysis in a fungal species complexQ47443498
Mitochondrial introns: a critical view.Q47842752
Complete mitochondrial genome sequence of the phytopathogenic fungus Penicillium digitatum and comparative analysis of closely related speciesQ48054496
Two genetic codes, one genome: frameshifted primate mitochondrial genes code for additional proteins in presence of antisense antitermination tRNAsQ48057549
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysisQ48068201
The complete mitochondrial genome of the vascular wilt fungus Verticillium dahliae: a novel gene order for Verticillium and a diagnostic tool for species identification.Q48087203
The complete mitochondrial genome of the entomopathogenic fungus Metarhizium anisopliae var. anisopliae: gene order and trn gene clusters reveal a common evolutionary course for all Sordariomycetes, while intergenic regions show variation.Q48095459
CREx: inferring genomic rearrangements based on common intervals.Q51905237
Evidence for subdivision of the root-endophyte Phialocephala fortinii into cryptic species and recombination within species.Q54708645
The Cryphonectria parasitica mitochondrial rns gene: Plasmid-like elements, introns and homing endonucleasesQ62664160
Comparative genomics of the oxidative phosphorylation system in fungiQ62726051
Concordant evolution of mitochondrial and nuclear genomes in the wheat pathogen Phaeosphaeria nodorumQ79757328
Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicolaQ80565301
Patterns of genetic variation in Phialocephala fortinii across a broad latitudinal transect in CanadaQ80790854
Monitoring the spatial and temporal dynamics of a community of the tree-root endophyte Phialocephala fortinii s.l.Q81543783
Mitochondrial recombination increases with age in Podospora anserinaQ83183923
Population genetic analysis of Phialocephala fortinii s.l. and Acephala applanata in two undisturbed forests in Switzerland and evidence for new cryptic speciesQ83187481
Molecular evolution of the mtDNA encoded rps3 gene among filamentous ascomycetes fungi with an emphasis on the Ophiostomatoid fungiQ84717263
P407language of work or nameEnglishQ1860
P921main subjectAcephala applanataQ10398951
P304page(s)166
P577publication date2012-05-04
P1433published inBMC GenomicsQ15765854
P1476titleMitochondrial genome evolution in species belonging to the Phialocephala fortinii s.l. - Acephala applanata species complex
P478volume13

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cites work (P2860)
Q37134429Analysis of the Mitochondrial Genome in Hypomyces aurantius Reveals a Novel Twintron Complex in Fungi
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Q64061736Mobile genetic elements explain size variation in the mitochondrial genomes of four closely-related Armillaria species
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