| scholarly article | Q13442814 |
| P819 | ADS bibcode | 2012PLoSO...742304T |
| P356 | DOI | 10.1371/JOURNAL.PONE.0042304 |
| P932 | PMC publication ID | 3441570 |
| P698 | PubMed publication ID | 23028432 |
| P5875 | ResearchGate publication ID | 231743041 |
| P50 | author | Jonathan A. Eisen | Q2000017 |
| Aaron Earl Darling | Q37391146 | ||
| P2093 | author name string | Marc T Facciotti | |
| Andrew Tritt | |||
| P2860 | cites work | Assembling millions of short DNA sequences using SSAKE. | Q51926970 |
| The complete genome sequence of Haloferax volcanii DS2, a model archaeon | Q21562676 | ||
| Genome sequence of enterohaemorrhagic Escherichia coli O157:H7 | Q22122385 | ||
| Fast and accurate short read alignment with Burrows-Wheeler transform | Q24653853 | ||
| De novo assembly of human genomes with massively parallel short read sequencing | Q24655711 | ||
| Mauve: multiple alignment of conserved genomic sequence with rearrangements | Q29547292 | ||
| High-quality draft assemblies of mammalian genomes from massively parallel sequence data | Q29615830 | ||
| Scaffolding pre-assembled contigs using SSPACE | Q29616857 | ||
| Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition | Q30476628 | ||
| Genome assembly forensics: finding the elusive mis-assembly | Q30482123 | ||
| TagDust--a program to eliminate artifacts from next generation sequencing data | Q30873072 | ||
| SOPRA: Scaffolding algorithm for paired reads via statistical optimization | Q33615353 | ||
| SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data | Q33635255 | ||
| Efficient construction of an assembly string graph using the FM-index | Q34119500 | ||
| Assemblathon 1: a competitive assessment of de novo short read assembly methods | Q34217144 | ||
| Genome assembly reborn: recent computational challenges | Q34984047 | ||
| BreakDancer: an algorithm for high-resolution mapping of genomic structural variation | Q34996567 | ||
| ECHO: a reference-free short-read error correction algorithm | Q35085300 | ||
| Quake: quality-aware detection and correction of sequencing errors | Q35167233 | ||
| Mauve assembly metrics | Q35230994 | ||
| Bambus 2: scaffolding metagenomes | Q35411810 | ||
| GAGE: A critical evaluation of genome assemblies and assembly algorithms | Q35791586 | ||
| BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing | Q37395182 | ||
| Short read fragment assembly of bacterial genomes | Q41829985 | ||
| Improved base calling for the Illumina Genome Analyzer using machine learning strategies | Q42558307 | ||
| Fast identification and statistical evaluation of segmental homologies in comparative maps. | Q45968767 | ||
| DAGchainer: a tool for mining segmental genome duplications and synteny | Q47215965 | ||
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 9 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | e42304 | |
| P577 | publication date | 2012-09-13 | |
| P1433 | published in | PLOS One | Q564954 |
| P1476 | title | An integrated pipeline for de novo assembly of microbial genomes | |
| P478 | volume | 7 |
| Q57030277 | A Large Open Pangenome and a Small Core Genome for Giant Pandoraviruses |
| Q64227259 | A Listeria monocytogenes ST2 clone lacking chitinase ChiB from an outbreak of non-invasive gastroenteritis |
| Q33753301 | A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis. |
| Q90379242 | A cornucopia of Shigella phages from the Cornhusker State |
| Q34977914 | A cost-effective method for high-throughput construction of illumina sequencing libraries |
| Q34136322 | A draft genome of Escherichia coli sequence type 127 strain 2009-46 |
| Q40262334 | A pan-genomic approach to understand the basis of host adaptation in Achromobacter |
| Q36488936 | Additional Draft Genome Sequences of Escherichia coli Strains Isolated from Septic Patients |
| Q34441683 | Aerobic biodegradation of 2,4-Dinitroanisole by Nocardioides sp. strain JS1661. |
| Q35948176 | Alternaria section Alternaria: Species, formae speciales or pathotypes? |
| Q91786770 | An Effective Pipeline Based on Relative Coverage for the Genome Assembly of Phytoplasmas and Other Fastidious Prokaryotes |
| Q42275615 | AnCo3, a New Member of the Emerging Family of Phage-Like Plasmids |
| Q64105163 | Antimicrobial Resistance Genes, Cassettes, and Plasmids Present in Associated With United States Food Animals |
| Q41177506 | Approaches for in silico finishing of microbial genome sequences |
| Q35007840 | Assembling single-cell genomes and mini-metagenomes from chimeric MDA products |
| Q42142114 | Association mapping reveals novel serpentine adaptation gene clusters in a population of symbiotic Mesorhizobium |
| Q33648397 | Automated ensemble assembly and validation of microbial genomes |
| Q90269474 | Bacteriophage-Insensitive Mutants of Antimicrobial-Resistant Salmonella Enterica are Altered in their Tetracycline Resistance and Virulence in Caco-2 Intestinal Cells |
| Q40120490 | Broad-range lytic bacteriophages that kill Staphylococcus aureus local field strains. |
| Q55120410 | Canada-Wide Epidemic of emm74 Group A Streptococcus Invasive Disease. |
| Q37381946 | Capsular Switching and Other Large-Scale Recombination Events in Invasive Sequence Type 1 Group B Streptococcus |
| Q28552964 | Carbapenem-Resistant Bacteria Recovered from Faeces of Dairy Cattle in the High Plains Region of the USA |
| Q35914981 | Characterization of Three Mycobacterium spp. with Potential Use in Bioremediation by Genome Sequencing and Comparative Genomics |
| Q37713818 | Characterization of invasive group B streptococcus strains from the greater Toronto area, Canada |
| Q35938103 | Characterization of the gut microbiota of Kawasaki disease patients by metagenomic analysis |
| Q92282538 | Chromosomal Conjugative and Mobilizable Elements in Streptococcus suis: Major Actors in the Spreading of Antimicrobial Resistance and Bacteriocin Synthesis Genes |
| Q40192335 | Circulation of blaKPC-3-Carrying IncX3 Plasmids among Citrobacter freundii Isolates in an Italian Hospital |
| Q31008319 | Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium |
| Q36542167 | Clonal Complex 17 Group B Streptococcus strains causing invasive disease in neonates and adults originate from the same genetic pool |
| Q38709610 | Clostridium chauvoei, an Evolutionary Dead-End Pathogen |
| Q36081531 | Comparative Genome Analyses of Streptococcus suis Isolates from Endocarditis Demonstrate Persistence of Dual Phenotypic Clones |
| Q35608077 | Comparative genomic analysis of a multiple antimicrobial resistant enterotoxigenic E. coli O157 lineage from Australian pigs. |
| Q50265731 | Comparative genomic analysis of a new tellurite-resistant Psychrobacter strain isolated from the Antarctic Peninsula. |
| Q35880930 | Comparative genomics and biological characterization of sequential Pseudomonas aeruginosa isolates from persistent airways infection. |
| Q92870833 | Comparative genomics of Mycobacterium mucogenicum and Mycobacterium neoaurum clade members emphasizing tRNA and non-coding RNA |
| Q46304940 | Comparative genomics of a drug-resistant Pseudomonas aeruginosa panel and the challenges of antimicrobial resistance prediction from genomes |
| Q55027334 | Comparative genomics of cocci-shaped Sporosarcina strains with diverse spatial isolation. |
| Q53822205 | Complete Genome Sequence of Marinobacter flavimaris LMG 23834T, Which Is Potentially Useful in Bioremediation. |
| Q36826080 | Complete Genome Sequence of Porcine Epidemic Diarrhea Virus Strain COL/Cundinamarca/2014 from Colombia |
| Q42205421 | Complete Genome Sequences of Two Phage-Like Plasmids Carrying the CTX-M-15 Extended-Spectrum β-Lactamase Gene |
| Q98386192 | Complete Genome and Comparative Genome Analysis of Lactobacillus reuteri YSJL-12, a Potential Probiotics Strain Isolated From Healthy Sow Fresh Feces |
| Q54259933 | Complete genome characterization of a rotavirus B (RVB) strain identified in Alpine goat kids with enteritis reveals inter-species transmission with RVB bovine strains. |
| Q45325995 | Complete genome sequence of maize yellow striate virus, a new cytorhabdovirus infecting maize and wheat crops in Argentina. |
| Q35912909 | Complete mitochondrial genome of the Verticillium-wilt causing plant pathogen Verticillium nonalfalfae |
| Q35777195 | Complex Population Structure and Virulence Differences among Serotype 2 Streptococcus suis Strains Belonging to Sequence Type 28. |
| Q58784868 | Computational Methods in Microbial Population Genomics |
| Q59126817 | Considerations for Optimization of High-Throughput Sequencing Bioinformatics Pipelines for Virus Detection |
| Q92857612 | Culture-Dependent Bioprospecting of Bacterial Isolates From the Canadian High Arctic Displaying Antibacterial Activity |
| Q30781309 | Deriving group A Streptococcus typing information from short-read whole-genome sequencing data |
| Q31116950 | Determining Streptococcus suis serotype from short-read whole-genome sequencing data |
| Q33827269 | Differential β-glucosidase expression as a function of carbon source availability in Talaromyces amestolkiae: a genomic and proteomic approach |
| Q89673791 | Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study |
| Q99239367 | Discovery and characterisation of circular bacteriocin plantacyclin B21AG from Lactiplantibacillus plantarum B21 |
| Q42336013 | Distribution of Suicin Gene Clusters in Streptococcus suis Serotype 2 Belonging to Sequence Types 25 and 28. |
| Q50042089 | Diversification of Secondary Metabolite Biosynthetic Gene Clusters Coincides with Lineage Divergence in Streptomyces. |
| Q38645716 | Diversity, virulence, and antimicrobial resistance of the KPC-producing Klebsiella pneumoniae ST307 clone |
| Q36026628 | Draft Genome Assembly of Filamentous Brackish Cyanobacterium Limnoraphis robusta Strain CS-951 |
| Q42182367 | Draft Genome Sequence of Achromobacter sp. Strain AR476-2, Isolated from a Cellulolytic Consortium. |
| Q41770500 | Draft Genome Sequence of Arthrobacter sp. Strain UCD-GKA (Phylum Actinobacteria). |
| Q36301568 | Draft Genome Sequence of Bacillus safensis JPL-MERTA-8-2, Isolated from a Mars-Bound Spacecraft |
| Q42743509 | Draft Genome Sequence of Bacillus subtilis ALBA01, a Strain with Antagonistic Activity against the Soilborne Fungal Pathogen of Onion Setophoma terrestris. |
| Q41875434 | Draft Genome Sequence of Bacillus vietnamensis Strain UCD-SED5 (Phylum Firmicutes). |
| Q35883972 | Draft Genome Sequence of Broad-Spectrum Antifungal Bacterium Burkholderia gladioli Strain NGJ1, Isolated from Healthy Rice Seeds |
| Q41850063 | Draft Genome Sequence of Burkholderia cordobensis Type Strain LMG 27620, Isolated from Agricultural Soils in Argentina |
| Q41954996 | Draft Genome Sequence of Burkholderia dolosa PC543 Isolated from Cystic Fibrosis Airways |
| Q43135784 | Draft Genome Sequence of Burkholderia gladioli Strain UCD-UG_CHAPALOTE (Phylum Proteobacteria). |
| Q47137625 | Draft Genome Sequence of Burkholderia puraquae Type Strain CAMPA 1040, Isolated from Hospital Settings in Córdoba, Argentina |
| Q38915329 | Draft Genome Sequence of Cobetia sp. UCD-24C, Isolated from Roots and Leaves of the Seagrass Zostera marina |
| Q34580557 | Draft Genome Sequence of Coxiella burnetii Strain Cb196, an Agent of Endocarditis in Saudi Arabia |
| Q40774303 | Draft Genome Sequence of Curtobacterium flaccumfaciens Strain UCD-AKU (Phylum Actinobacteria). |
| Q40475958 | Draft Genome Sequence of Curtobacterium sp. Strain UCD-KPL2560 (Phylum Actinobacteria). |
| Q41992992 | Draft Genome Sequence of Cyanobacterium Hassallia byssoidea Strain VB512170, Isolated from Monuments in India |
| Q40602133 | Draft Genome Sequence of Dietzia sp. Strain UCD-THP (Phylum Actinobacteria). |
| Q42156333 | Draft Genome Sequence of Enterobacter sp. Strain UCD-UG_FMILLET (Phylum Proteobacteria). |
| Q42159746 | Draft Genome Sequence of Enterococcus faecalis Strain UCD-PD3 |
| Q35173231 | Draft Genome Sequence of Exopolysaccharide-Producing Cyanobacterium Aphanocapsa montana BDHKU 210001. |
| Q41871038 | Draft Genome Sequence of Extended-Spectrum β-Lactamase-Producing Klebsiella pneumoniae Isolated from a Patient in Lebanon |
| Q40372868 | Draft Genome Sequence of Geobacillus thermopakistaniensis Strain MAS1. |
| Q41460710 | Draft Genome Sequence of Gordonia sp. Strain UCD-TK1 (Phylum Actinobacteria). |
| Q41978197 | Draft Genome Sequence of Halomonas sp. KHS3, a Polyaromatic Hydrocarbon-Chemotactic Strain |
| Q41836658 | Draft Genome Sequence of Klebsiella pneumoniae KGM-IMP216 Harboring blaCTX-M-15, blaDHA-1, blaTEM-1B, blaNDM-1, blaSHV-28, and blaOXA-1, Isolated from a Patient in Lebanon |
| Q41117162 | Draft Genome Sequence of Klebsiella pneumoniae OK8, a Multidrug-Resistant Mouse and Human Pathogen |
| Q36876888 | Draft Genome Sequence of Klebsiella pneumoniae UCD-JA29 Isolated from a Patient with Sepsis |
| Q40601931 | Draft Genome Sequence of Kocuria sp. Strain UCD-OTCP (Phylum Actinobacteria). |
| Q34774384 | Draft Genome Sequence of Lactobacillus casei Lbs2. |
| Q37723018 | Draft Genome Sequence of Lysobacter capsici AZ78, a Bacterium Antagonistic to Plant-Pathogenic Oomycetes. |
| Q39758294 | Draft Genome Sequence of Microbacterium sp. Strain UCD-TDU (Phylum Actinobacteria). |
| Q92525983 | Draft Genome Sequence of Novel Coastal Bacterium LSUCC0115 from the MWH-UniPo Clade, Order Burkholderiales, Class Betaproteobacteria |
| Q42121756 | Draft Genome Sequence of Planomicrobium glaciei UCD-HAM (Phylum Firmicutes). |
| Q35846846 | Draft Genome Sequence of Porphyrobacter mercurialis (sp. nov.) Strain Coronado |
| Q64090410 | Draft Genome Sequence of Porphyromonas gingivalis Strain 381 Okayama (381OKJP) Stock Culture |
| Q42314516 | Draft Genome Sequence of Propionibacterium avidum Strain UCD-PD2 Isolated from a Feline Anal Sac. |
| Q43104327 | Draft Genome Sequence of Pseudoalteromonas tetraodonis Strain UCD-SED8 (Phylum Gammaproteobacteria). |
| Q42146872 | Draft Genome Sequence of Pseudomonas aeruginosa Strain Hex1T Isolated from Soils Contaminated with Used Lubricating Oil in Argentina |
| Q42318736 | Draft Genome Sequence of Pseudomonas fluorescens ML11A, an Endogenous Strain from Brook Charr with Antagonistic Properties against Aeromonas salmonicida subsp. salmonicida |
| Q42969491 | Draft Genome Sequence of Rhizobium rhizogenes Strain ATCC 15834. |
| Q37458360 | Draft Genome Sequence of Saccharopolyspora rectivirgula |
| Q36594450 | Draft Genome Sequence of Shewanella sp. Strain P1-14-1, a Bacterial Inducer of Settlement and Morphogenesis in Larvae of the Marine Hydroid Hydractinia echinata |
| Q61444073 | Draft Genome Sequence of Staphylococcus sciuri Strain LCHXa, a Lithium-Tolerant Bacterium Isolated from Laguna Chaxa, Salar de Atacama, Chile |
| Q39395244 | Draft Genome Sequence of Stenotrophomonas maltophilia SeITE02, a Gammaproteobacterium Isolated from Selenite-Contaminated Mining Soil. |
| Q37393603 | Draft Genome Sequence of Strain LSUCC0135, an Early Diverging Member of the Order Methylophilales in the Phylum Betaproteobacteria. |
| Q38963174 | Draft Genome Sequence of Tatumella sp. Strain UCD-D_suzukii (Phylum Proteobacteria) Isolated from Drosophila suzukii Larvae |
| Q41460704 | Draft Genome Sequence of Tenacibaculum soleae UCD-KL19. |
| Q43156309 | Draft Genome Sequence of Tolypothrix boutellei Strain VB521301. |
| Q41820544 | Draft Genome Sequence of Triclosan-Resistant Cystic Fibrosis Isolate Achromobacter xylosoxidans CF304. |
| Q39561619 | Draft Genome Sequence of a Bacillus Bacterium from the Atacama Desert Wetlands Metagenome |
| Q35837276 | Draft Genome Sequence of a Highly Virulent Rabbit Staphylococcus aureus Strain |
| Q36201741 | Draft Genome Sequence of a Multi-Metal Resistant Bacterium Pseudomonas putida ATH-43 Isolated from Greenwich Island, Antarctica |
| Q38384381 | Draft Genome Sequence of a Multidrug-Resistant Acinetobacter baumannii PKAB07 Clinical Strain from India Belonging to Sequence Type 195. |
| Q40429791 | Draft Genome Sequence of a Strain of Cosmopolitan Fungus Trichoderma atroviride |
| Q42379964 | Draft Genome Sequence of an Atypical Highly Virulent Rabbit Staphylococcus aureus Strain |
| Q40075817 | Draft Genome Sequence of blaNDM-1-Positive Escherichia coli O25b-ST131 Clone Isolated from an Environmental Sample. |
| Q37535174 | Draft Genome Sequence of the Aquatic Phosphorus-Solubilizing and -Mineralizing Bacterium Bacillus sp. Strain CPSM8. |
| Q37309154 | Draft Genome Sequence of the Arsenate-Respiring Bacterium Chrysiogenes arsenatis Strain DSM 11915. |
| Q42531709 | Draft Genome Sequence of the Bacterium Pseudomonas putida CBB5, Which Can Utilize Caffeine as a Sole Carbon and Nitrogen Source |
| Q41976543 | Draft Genome Sequence of the Endosymbiont "Candidatus Ruthia magnifica" UCD-CM (Phylum Proteobacteria). |
| Q42586297 | Draft Genome Sequence of the Gram-Positive Thermophilic Iron Reducer Thermincola ferriacetica Strain Z-0001T. |
| Q42720820 | Draft Genome Sequence of the Oleaginous Yeast Yarrowia lipolytica PO1f, a Commonly Used Metabolic Engineering Host |
| Q90384634 | Draft Genome Sequence of the Plant Growth-Promoting Rhizobacterium Pseudomonas protegens Strain BNJ-SS-45, Isolated from Rhizosphere Soil of Wheat (Triticum aestivum) |
| Q36518745 | Draft Genome Sequences of Acinetobacter baumannii Strains Harboring the blaNDM-1 Gene Isolated in Lebanon from Civilians Wounded during the Syrian Civil War. |
| Q47095595 | Draft Genome Sequences of Aggregatibacter actinomycetemcomitans Strains 310a and 310b. |
| Q37545756 | Draft Genome Sequences of Biosafety Level 2 Opportunistic Pathogens Isolated from the Environmental Surfaces of the International Space Station. |
| Q34737338 | Draft Genome Sequences of Escherichia coli Strains Isolated from Septic Patients |
| Q41862369 | Draft Genome Sequences of Extended-Spectrum β-Lactamase-Producing Escherichia coli Strains Isolated from Patients in Lebanon |
| Q41843293 | Draft Genome Sequences of Leptospira santarosai Strains U160, U164, and U233, Isolated from Asymptomatic Cattle |
| Q55076415 | Draft Genome Sequences of Nine New Carnobacterium maltaromaticum Strains Isolated from Diseased Sharks. |
| Q54942731 | Draft Genome Sequences of Plant-Associated Bacillus Strains Isolated from the Qinghai-Tibetan Plateau. |
| Q41833464 | Draft Genome Sequences of Pseudomonas moraviensis UCD-KL30, Vibrio ostreicida UCD-KL16, Colwellia sp. Strain UCD-KL20, Shewanella sp. Strain UCD-KL12, and Shewanella sp. Strain UCD-KL21, Isolated from Seagrass |
| Q41111311 | Draft Genome Sequences of Shewanella sp. Strain UCD-FRSP16_17 and Nine Vibrio Strains Isolated from Abalone Feces |
| Q36381847 | Draft Genome Sequences of Six Pseudoalteromonas Strains, P1-7a, P1-9, P1-13-1a, P1-16-1b, P1-25, and P1-26, Which Induce Larval Settlement and Metamorphosis in Hydractinia echinata |
| Q39660429 | Draft Genome Sequences of Streptococcus pyogenes Strains Associated with Throat and Skin Infections in Lebanon |
| Q41067399 | Draft Genome Sequences of Two Lipopeptide-Producing Strains of Bacillus methylotrophicus |
| Q38550589 | Draft Genome Sequences of Two Pseudoalteromonas Strains Isolated from Roots and Leaf Blades of the Seagrass Zostera marina |
| Q39107828 | Draft Genome Sequences of Two Pseudoalteromonas porphyrae Strains Isolated from Seagrass Sediment |
| Q38550796 | Draft Genome Sequences of Two Vibrio splendidus Strains, Isolated from Seagrass Sediment |
| Q36346081 | Draft Whole-Genome Sequence of Serratia marcescens Strain RM66262, Isolated from a Patient with a Urinary Tract Infection |
| Q41849550 | Draft Whole-Genome Sequence of Sphingobium sp. 22B, a Polycyclic Aromatic Hydrocarbon-Degrading Bacterium from Semiarid Patagonia, Argentina. |
| Q40119802 | Draft genome of the Leptospira interrogans strains, Acegua, RCA, Prea, and Capivara, obtained from wildlife maintenance hosts and infected domestic animals |
| Q49164030 | Draft genome sequence of Exiguobacterium aurantiacum strain PN47 isolate from saline ponds, known as "Salar del Huasco", located in the Altiplano in the North of Chile. |
| Q39757946 | Draft genome sequence of an Actinobacterium, Brachybacterium muris strain UCD-AY4. |
| Q39471400 | Draft genome sequences of 26 porphyromonas strains isolated from the canine oral microbiome |
| Q28817821 | Draft genome sequences of eight bacteria isolated from the indoor environment: Staphylococcus capitis strain H36, S. capitis strain H65, S. cohnii strain H62, S. hominis strain H69, Microbacterium sp. strain H83, ... |
| Q41337816 | Draft genome sequences of two Aeromonas salmonicida subsp. salmonicida isolates harboring plasmids conferring antibiotic resistance |
| Q91695207 | Dynamic virulence-related regions of the plant pathogenic fungus Verticillium dahliae display enhanced sequence conservation |
| Q51153915 | Ecological genomics of mutualism decline in nitrogen-fixing bacteria. |
| Q28538928 | Epidemiology of extended-spectrum β-lactamase producing Escherichia coli in the stools of returning Japanese travelers, and the risk factors for colonization |
| Q89096796 | Evaluating the efficacy of the new Ion PGM Hi-Q Sequencing Kit applied to bacterial genomes |
| Q36394077 | Evolution of class 1 integrons: Mobilization and dispersal via food-borne bacteria |
| Q48338961 | Evolution within the fungal genus Verticillium is characterized by chromosomal rearrangement and gene loss. |
| Q37509351 | Examination of Mycobacterium avium subspecies paratuberculosis mixed genotype infections in dairy animals using a whole genome sequencing approach |
| Q64095735 | Extended insight into the Mycobacterium chelonae-abscessus complex through whole genome sequencing of Mycobacterium salmoniphilum outbreak and Mycobacterium salmoniphilum-like strains |
| Q58787074 | Extensive genomic diversity among Mycobacterium marinum strains revealed by whole genome sequencing |
| Q54963841 | Fermentation products in the cystic fibrosis airways induce aggregation and dormancy-associated expression profiles in a CF clinical isolate of Pseudomonas aeruginosa. |
| Q39455259 | Fluoroquinolone Resistance among Clonal Complex 1 Group B Streptococcus Strains |
| Q37293854 | Functional Annotations of Paralogs: A Blessing and a Curse |
| Q51054245 | Functional characterization of an N-terminally-truncated mitochondrial porin expressed in Neurospora crassa. |
| Q35860113 | Functional overlap of the Arabidopsis leaf and root microbiota |
| Q102053964 | Fungal-bacterial interaction selects for quorum sensing mutants with increased production of natural antifungal compounds |
| Q34594221 | Genetic characterization and comparison of Clostridium botulinum isolates from botulism cases in Japan between 2006 and 2011. |
| Q30636490 | Genetic characterization of clinical and environmental Vibrio parahaemolyticus from the Northeast USA reveals emerging resident and non-indigenous pathogen lineages |
| Q36224945 | Genome Analysis of Streptococcus pyogenes Associated with Pharyngitis and Skin Infections |
| Q42290311 | Genome Sequence of "Candidatus Carsonella ruddii" Strain BC, a Nutritional Endosymbiont of Bactericera cockerelli. |
| Q33917794 | Genome Sequence of Bacillus thuringiensis subsp. kurstaki Strain HD-1 |
| Q37150272 | Genome Sequence of Hydrocarbon-Degrading Cronobacter sp. Strain DJ34 Isolated from Crude Oil-Containing Sludge from the Duliajan Oil Fields, Assam, India |
| Q33750929 | Genome Sequence of SCB34, a Sequence Type 131 Multidrug-Resistant Escherichia coli Isolate Causing Neonatal Early-Onset Sepsis |
| Q40988760 | Genome Sequence of Xanthomonas arboricola pv. Corylina, Isolated from Turkish Filbert in Colorado |
| Q37097996 | Genome Sequence of an Epidemic Isolate of Mycobacterium abscessus subsp. bolletii from Rio de Janeiro, Brazil |
| Q34493564 | Genome Sequences of Klebsiella variicola Isolates from Dairy Animals with Bovine Mastitis from Newfoundland, Canada |
| Q36613741 | Genome analysis of Listeria ivanovii strain G770 that caused a deadly aortic prosthesis infection |
| Q41115096 | Genome sequence of Candidatus Arsenophonus lipopteni, the exclusive symbiont of a blood sucking fly Lipoptena cervi (Diptera: Hippoboscidae). |
| Q38413211 | Genome sequence of Prevotella intermedia SUNY aB G8-9K-3, a biofilm forming strain with drug-resistance |
| Q92238653 | Genome sequence of Xanthomonas fuscans subsp. fuscans strain Xff49: a new isolate obtained from common beans in Southern Brazil |
| Q35863954 | Genome sequence of the clover symbiont Rhizobium leguminosarum bv. trifolii strain CC275e. |
| Q97518623 | Genome-Wide Identification and Functional Characterization of β-Agarases in Vibrio astriarenae Strain HN897 |
| Q90171154 | Genome-based Salmonella serotyping as the new gold standard |
| Q34796239 | Genomer--a Swiss army knife for genome scaffolding |
| Q43184461 | Genomes of Geoalkalibacter ferrihydriticus Z-0531T and Geoalkalibacter subterraneus Red1T, Two Haloalkaliphilic Metal-Reducing Deltaproteobacteria |
| Q90543781 | Genomic Characterization of MDR Escherichia coli Harboring blaOXA-48 on the IncL/M-type Plasmid Isolated from Blood Stream Infection |
| Q55360033 | Genomic analysis of a Raoultella ornithinolytica strain causing prosthetic joint infection in an immunocompetent patient. |
| Q40316746 | Genomic analysis of a Streptococcus pyogenes strain causing endocarditis in a child |
| Q90669501 | Genomic analysis of the four ecologically distinct cactus host populations of Drosophila mojavensis |
| Q36352901 | Genomic and Functional Characterization of qnr-Encoding Plasmids from Municipal Wastewater Biosolid Klebsiella pneumoniae Isolates. |
| Q36297845 | Genomic attributes of extended-spectrum β-lactamase-producing Escherichia coli isolated from patients in Lebanon |
| Q64089544 | Genomic basis of antibiotic resistance in Vibrio parahaemolyticus strain JPA1 |
| Q54993751 | Genomic evolution of Staphylococcus aureus isolates colonizing the nares and progressing to bacteremia. |
| Q52655983 | Genomic insights into the broad antifungal activity, plant-probiotic properties, and their regulation, in Pseudomonas donghuensis strain SVBP6. |
| Q39879069 | Genomic islands 1 and 2 play key roles in the evolution of extensively drug-resistant ST235 isolates of Pseudomonas aeruginosa. |
| Q90479506 | Haloterrigena sp. Strain SGH1, a Bacterioruberin-Rich, Perchlorate-Tolerant Halophilic Archaeon Isolated From Halite Microbial Communities, Atacama Desert, Chile |
| Q40564816 | Identification and Complete Genome of Seneca Valley Virus in Vesicular Fluid and Sera of Pigs Affected with Idiopathic Vesicular Disease, Brazil. |
| Q33705234 | In silico Prediction, in vitro Antibacterial Spectrum, and Physicochemical Properties of a Putative Bacteriocin Produced by Lactobacillus rhamnosus Strain L156.4. |
| Q47321297 | Insights into the genome and proteome of Sphingomonas paucimobilis strain 20006FA involved in the regulation of polycyclic aromatic hydrocarbon degradation. |
| Q34580604 | Kingella kingae KK247, an Atypical Pulsed-Field Gel Electrophoresis Clone A Strain |
| Q30301008 | Klebsiella pneumoniae carbapenemase (KPC)-producing K. pneumoniae at a single institution: insights into endemicity from whole-genome sequencing |
| Q37239405 | Leisingera sp. JC1, a Bacterial Isolate from Hawaiian Bobtail Squid Eggs, Produces Indigoidine and Differentially Inhibits Vibrios |
| Q48188848 | Magic Pools: Parallel Assessment of Transposon Delivery Vectors in Bacteria |
| Q64108115 | Major Release of 161 Whole-Genome Sequences from the International Consortium Database |
| Q36286800 | Metabolic and genomic analysis elucidates strain-level variation in Microbacterium spp. isolated from chromate contaminated sediment. |
| Q36534900 | Metagenomic study of red biofilms from Diamante Lake reveals ancient arsenic bioenergetics in haloarchaea |
| Q46287052 | Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria |
| Q58225960 | Modular Traits of the Rhizobiales Root Microbiota and Their Evolutionary Relationship with Symbiotic Rhizobia |
| Q58762159 | Molecular characterization of Carbapenem resistant Escherichia coli recovered from a tertiary hospital in Lebanon |
| Q35035553 | Molecular evolution of the VP1, VP2, and VP3 genes in human rhinovirus species C. |
| Q46535429 | Monitoring the impact of bioaugmentation with a PAH-degrading strain on different soil microbiomes using pyrosequencing. |
| Q58061559 | Mutant phenotypes for thousands of bacterial genes of unknown function |
| Q38268384 | Next-generation sequencing in veterinary medicine: how can the massive amount of information arising from high-throughput technologies improve diagnosis, control, and management of infectious diseases? |
| Q35657739 | NxRepair: error correction in de novo sequence assembly using Nextera mate pairs |
| Q49208603 | Orpheovirus IHUMI-LCC2: A New Virus among the Giant Viruses. |
| Q40143845 | Parallel evolution of two clades of a major Atlantic endemic Vibrio parahaemolyticus pathogen lineage by independent acquisition of related pathogenicity islands |
| Q58007598 | Parallel genome reduction in symbionts descended from closely related free-living bacteria |
| Q42228683 | Phage ϕC2 mediates transduction of Tn6215, encoding erythromycin resistance, between Clostridium difficile strains |
| Q89032229 | Phylogenetic conservatism of thermal traits explains dispersal limitation and genomic differentiation of Streptomyces sister-taxa |
| Q34505487 | Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response |
| Q47361812 | Pool deconvolution approach for high-throughput gene mining from Bacillus thuringiensis |
| Q35949469 | Population Structure and Antimicrobial Resistance Profiles of Streptococcus suis Serotype 2 Sequence Type 25 Strains |
| Q21131104 | Population and genomic analysis of the genus Halorubrum |
| Q35229670 | Population structure and antimicrobial resistance of invasive serotype IV group B Streptococcus, Toronto, Ontario, Canada |
| Q40963946 | Prophage Integrase Typing Is a Useful Indicator of Genomic Diversity in Salmonella enterica |
| Q36521341 | Prospective Whole-Genome Sequencing Enhances National Surveillance of Listeria monocytogenes. |
| Q52661729 | Pseudomonas rhizophila S211, a New Plant Growth-Promoting Rhizobacterium with Potential in Pesticide-Bioremediation. |
| Q41069911 | RAMPART: a workflow management system for de novo genome assembly |
| Q35212018 | RNA shotgun metagenomic sequencing of northern California (USA) mosquitoes uncovers viruses, bacteria, and fungi |
| Q57026999 | SKESA: strategic k-mer extension for scrupulous assemblies |
| Q54205011 | Salmonella enterica Prophage Sequence Profiles Reflect Genome Diversity and Can Be Used for High Discrimination Subtyping. |
| Q49935821 | Salmonella enterica serotype 4,[5],12:i:- in swine in the United States Midwest: an emerging multidrug resistant clone. |
| Q40698271 | Sequencing of plasmids pAMBL1 and pAMBL2 from Pseudomonas aeruginosa reveals a blaVIM-1 amplification causing high-level carbapenem resistance |
| Q38794756 | Serotype Distribution, Population Structure, and Antimicrobial Resistance of Group B Streptococcus Strains Recovered from Colonized Pregnant Women |
| Q49923893 | Shigella phages isolated during a dysentery outbreak reveal uncommon structures and broad species diversity. |
| Q40629011 | Single-Molecule Real-Time Sequencing Combined with Optical Mapping Yields Completely Finished Fungal Genome |
| Q60044242 | Species Designations Belie Phenotypic and Genotypic Heterogeneity in Oral Streptococci |
| Q91623039 | Spontaneously Arising Streptococcus mutans Variants with Reduced Susceptibility to Chlorhexidine Display Genetic Defects and Diminished Fitness |
| Q33577127 | Streptococcus mitis strains causing severe clinical disease in cancer patients |
| Q30391671 | Streptomyces thermoautotrophicus does not fix nitrogen |
| Q47160684 | Strong Genomic and Phenotypic Heterogeneity in the Aeromonas sobria Species Complex |
| Q38716918 | Structured Populations of Sulfolobus acidocaldarius with Susceptibility to Mobile Genetic Elements. |
| Q28647332 | Swabs to genomes: a comprehensive workflow |
| Q52599683 | The Applied Development of a Tiered Multilocus Sequence Typing (MLST) Scheme for Dichelobacter nodosus. |
| Q36143642 | The Widespread Multidrug-Resistant Serotype O12 Pseudomonas aeruginosa Clone Emerged through Concomitant Horizontal Transfer of Serotype Antigen and Antibiotic Resistance Gene Clusters |
| Q38604733 | The complete mitochondrial genome of the grooved carpet shell, Ruditapes decussatus (Bivalvia, Veneridae). |
| Q28830191 | The complexity and diversity of the Pathogenicity Locus in Clostridium difficile clade 5 |
| Q34529064 | The genome of Clostridium difficile 5.3. |
| Q59794492 | The mitochondrial genome of Endoconidiophora resinifera is intron rich |
| Q92049688 | Transmission of a New Polerovirus Infecting Pepper by the Whitefly Bemisia tabaci |
| Q42198897 | Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen |
| Q35451943 | Two Draft Genome Sequences of a New Serovar of Salmonella enterica, Serovar Lubbock |
| Q43168539 | Typing and comparative genome analysis of Brucella melitensis isolated from Lebanon |
| Q35607493 | Use of Whole-Genome Phylogeny and Comparisons for Development of a Multiplex PCR Assay To Identify Sequence Type 36 Vibrio parahaemolyticus |
| Q41614521 | Variants of a genomic island in Aeromonas salmonicida subsp. salmonicida link isolates with their geographical origins. |
| Q28109667 | Vibrio vulnificus Type 6 Secretion System 1 Contains Anti-Bacterial Properties |
| Q33681785 | Vipie: web pipeline for parallel characterization of viral populations from multiple NGS samples. |
| Q35315792 | Whole genome sequencing of extended-spectrum β-lactamase producing Klebsiella pneumoniae isolated from a patient in Lebanon |
| Q37535764 | Whole-Genome Characterization and Strain Comparison of VT2f-Producing Escherichia coli Causing Hemolytic Uremic Syndrome. |
| Q37472946 | Whole-Genome Sequencing Applied to the Molecular Epidemiology of Shiga Toxin-Producing Escherichia coli O157:H7 in Argentina |
| Q46264516 | Whole-Genome Sequencing of Lactobacillus Species from Two Commercial Probiotic Products |
| Q88333991 | Whole-Genome Sequencing of Recent Listeria monocytogenes Isolates from Germany Reveals Population Structure and Disease Clusters |
| Q35644339 | Whole-genome comparative analysis of virulence genes unveils similarities and differences between endophytes and other symbiotic bacteria |
| Q42932586 | Whole-genome sequencing of the Mycobacterium tuberculosis Manila sublineage results in less clustering and better resolution than mycobacterial interspersed repetitive-unit-variable-number tandem-repeat (MIRU-VNTR) typing and spoligotyping |
| Q46272918 | Yeast diversity in relation to the production of fuels and chemicals |
| Q47578842 | soxRS induces colistin hetero-resistance in Enterobacter asburiae and Enterobacter cloacae by regulating the acrAB-tolC efflux pump |
Search more.