| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/bmcbi/DayarianMS10 |
| P6179 | Dimensions Publication ID | 1038621336 |
| P356 | DOI | 10.1186/1471-2105-11-345 |
| P932 | PMC publication ID | 2909219 |
| P698 | PubMed publication ID | 20576136 |
| P5875 | ResearchGate publication ID | 44798226 |
| P50 | author | Todd P Michael | Q30518528 |
| P2093 | author name string | Anirvan M Sengupta | |
| Adel Dayarian | |||
| P2860 | cites work | Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding | Q24647100 |
| Velvet: algorithms for de novo short read assembly using de Bruijn graphs | Q24657623 | ||
| SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing | Q24672027 | ||
| Optimization by Simulated Annealing | Q25939004 | ||
| The impact of next-generation sequencing technology on genetics | Q28268088 | ||
| Next-generation DNA sequencing | Q29547447 | ||
| A greedy algorithm for aligning DNA sequences | Q29547622 | ||
| A whole-genome assembly of Drosophila | Q29616863 | ||
| Fragment assembly with double-barreled data | Q30657293 | ||
| Gene-boosted assembly of a novel bacterial genome from very short reads | Q33372102 | ||
| Hierarchical scaffolding with Bambus | Q34287978 | ||
| ALLPATHS: de novo assembly of whole-genome shotgun microreads | Q34761631 | ||
| Genome assembly reborn: recent computational challenges | Q34984047 | ||
| De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer | Q36586588 | ||
| Application of 'next-generation' sequencing technologies to microbial genetics | Q37415296 | ||
| Short read fragment assembly of bacterial genomes | Q41829985 | ||
| Filtering error from SOLiD Output | Q42651823 | ||
| Beware of mis-assembled genomes | Q48110007 | ||
| Extending assembly of short DNA sequences to handle error. | Q51905275 | ||
| Assembling millions of short DNA sequences using SSAKE. | Q51926970 | ||
| De novoassembly of thePseudomonas syringaepv.syringaeB728a genome using Illumina/Solexa short sequence reads | Q57232319 | ||
| P921 | main subject | statistics | Q12483 |
| P304 | page(s) | 345 | |
| P577 | publication date | 2010-06-24 | |
| P1433 | published in | BMC Bioinformatics | Q4835939 |
| P1476 | title | SOPRA: Scaffolding algorithm for paired reads via statistical optimization | |
| P478 | volume | 11 |
| Q54942390 | A Possible Trifunctional β-Carotene Synthase Gene Identified in the Draft Genome of Aurantiochytrium sp. Strain KH105. |
| Q40590072 | A comprehensive evaluation of assembly scaffolding tools |
| Q40548513 | A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs |
| Q48252376 | A-GAME: improving the assembly of pooled functional metagenomics sequence data. |
| Q33760453 | AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references |
| Q34426729 | An integrated pipeline for de novo assembly of microbial genomes |
| Q64253869 | Aneuploidy and Ethanol Tolerance in |
| Q41177506 | Approaches for in silico finishing of microbial genome sequences |
| Q35651854 | Assembling short reads from jumping libraries with large insert sizes |
| Q36011122 | Assembly scaffolding with PE-contaminated mate-pair libraries. |
| Q35226046 | BESST--efficient scaffolding of large fragmented assemblies. |
| Q39383122 | BOSS: a novel scaffolding algorithm based on an optimized scaffold graph |
| Q35411810 | Bambus 2: scaffolding metagenomes |
| Q57590494 | Better Identification of Repeats in Metagenomic Scaffolding |
| Q47124467 | CAMSA: a tool for comparative analysis and merging of scaffold assemblies |
| Q34622220 | CAR: contig assembly of prokaryotic draft genomes using rearrangements |
| Q64097826 | Comparative Genomics Between and Applied to Identify Mechanisms Involved in Adaptation |
| Q33556673 | Comparative genomics of Taphrina fungi causing varying degrees of tumorous deformity in plants |
| Q37970068 | Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph |
| Q36036061 | Contig-Layout-Authenticator (CLA): A Combinatorial Approach to Ordering and Scaffolding of Bacterial Contigs for Comparative Genomics and Molecular Epidemiology |
| Q90484308 | Differential Contribution of the Parental Genomes to a S. cerevisiae × S. uvarum Hybrid, Inferred by Phenomic, Genomic, and Transcriptomic Analyses, at Different Industrial Stress Conditions |
| Q42206598 | Draft Genome Sequence of Environmental Vibrio cholerae 2012EL-1759 with Similarities to the V. cholerae O1 Classical Biotype |
| Q37599197 | Draft Genome Sequence of the Oleaginous Green Alga Tetradesmus obliquus UTEX 393. |
| Q110949620 | Empirical evaluation of methods for genome assembly |
| Q37587714 | Epigenetic regulation of Plasmodium falciparum clonally variant gene expression during development in Anopheles gambiae |
| Q35801522 | Exact approaches for scaffolding |
| Q39348055 | Fast scaffolding with small independent mixed integer programs |
| Q45789676 | GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies |
| Q39179580 | Genix: a new online automated pipeline for bacterial genome annotation |
| Q28598143 | Genome Sequence of the Edible Cultivated Mushroom Lentinula edodes (Shiitake) Reveals Insights into Lignocellulose Degradation |
| Q89743097 | Genome structure reveals the diversity of mating mechanisms in Saccharomyces cerevisiae x Saccharomyces kudriavzevii hybrids, and the genomic instability that promotes phenotypic diversity |
| Q45049471 | Genomic Basis of Adaptive Evolution: The Survival of Amur Ide (Leuciscus waleckii) in an Extremely Alkaline Environment |
| Q48535421 | Genomic repeats, misassembly and reannotation: a case study with long-read resequencing of Porphyromonas gingivalis reference strains |
| Q34211269 | ILP-based maximum likelihood genome scaffolding |
| Q34393911 | Improved gap size estimation for scaffolding algorithms. |
| Q31059382 | Improvement of the banana "Musa acuminata" reference sequence using NGS data and semi-automated bioinformatics methods |
| Q91819158 | LRScaf: improving draft genomes using long noisy reads |
| Q34980287 | L_RNA_scaffolder: scaffolding genomes with transcripts. |
| Q35587082 | MeDuSa: a multi-draft based scaffolder. |
| Q92541195 | Modern technologies and algorithms for scaffolding assembled genomes |
| Q36268625 | Multi-CAR: a tool of contig scaffolding using multiple references |
| Q30717601 | Next-generation sequence assembly: four stages of data processing and computational challenges |
| Q38016945 | Next-generation sequencing and large genome assemblies |
| Q39774035 | OPERA-LG: efficient and exact scaffolding of large, repeat-rich eukaryotic genomes with performance guarantees |
| Q35550153 | Opera: reconstructing optimal genomic scaffolds with high-throughput paired-end sequences |
| Q57056848 | Orientation of Ordered Scaffolds |
| Q28657611 | Orione, a web-based framework for NGS analysis in microbiology |
| Q52676776 | P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads. |
| Q35774178 | SATRAP: SOLiD Assembler TRAnslation Program |
| Q43860244 | SCARPA: scaffolding reads with practical algorithms |
| Q29616805 | SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler |
| Q35192458 | SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information |
| Q41045069 | ScaffMatch: scaffolding algorithm based on maximum weight matching |
| Q40527179 | ScaffoldScaffolder: solving contig orientation via bidirected to directed graph reduction |
| Q36297259 | Scaffolder - software for manual genome scaffolding |
| Q34324936 | Sequence assembly demystified |
| Q33588752 | The combination of direct and paired link graphs can boost repetitive genome assembly |
| Q38811527 | The present and future of de novo whole-genome assembly |
| Q33353810 | Toward almost closed genomes with GapFiller |
| Q30410813 | Unravelling the genome of Holy basil: an "incomparable" "elixir of life" of traditional Indian medicine |
| Q22122171 | Using the Acropora digitifera genome to understand coral responses to environmental change |
| Q37231213 | Whole-genome sequencing in bacteriology: state of the art. |
| Q35763327 | WiseScaffolder: an algorithm for the semi-automatic scaffolding of Next Generation Sequencing data. |
Search more.