scholarly article | Q13442814 |
P50 | author | Martin Broberg | Q56942296 |
petri toronen | Q58414912 | ||
Minna Pirhonen | Q59257823 | ||
Johanna Nykyri | Q59684803 | ||
Miia Pasanen | Q63800337 | ||
Outi Niemi | Q41867394 | ||
P2093 | author name string | Liisa Holm | |
E Tapio Palva | |||
Patrik Koskinen | |||
Jussi Nokso-Koivisto | |||
Ilja Plyusnin | |||
P2860 | cites work | Bacterial Microcompartments | Q21994405 |
Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris | Q22122106 | ||
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Diversity of restriction-modification gene homologues in Helicobacter pylori. | Q52927779 | ||
Phage-selected lipopolysaccharide mutants of Pectobacterium atrosepticum exhibit different impacts on virulence. | Q64892863 | ||
Expression of pehA-bla gene fusions in Erwinia carotovora subsp. carotovora and isolation of regulatory mutants affecting polygalacturonase production | Q68005668 | ||
Bacteriophage T4 resistant mutants of the plant pathogen Erwinia carotovora | Q68059245 | ||
Global regulators ExpA (GacA) and KdgR modulate extracellular enzyme gene expression through the RsmA-rsmB system in Erwinia carotovora subsp. carotovora | Q74344084 | ||
The Rcs phosphorelay modulates the expression of plant cell wall degrading enzymes and virulence in Pectobacterium carotovorum ssp. carotovorum | Q80463606 | ||
Use of a pooled transposon mutation grid to demonstrate roles in disease development for Erwinia carotovora subsp. atroseptica putative type III secreted effector (DspE/A) and helper (HrpN) proteins | Q80599171 | ||
Identification and characterization of Nip, necrosis-inducing virulence protein of Erwinia carotovora subsp. carotovora | Q81141553 | ||
Type II quorum sensing regulates virulence in Erwinia carotovora ssp. carotovora | Q83204812 | ||
Cloning, expression, and characterization of a new phytase from the phytopathogenic bacterium Pectobacterium wasabiae DSMZ 18074. | Q42663642 | ||
Multiple defence signals induced by Erwinia carotovora ssp. carotovora elicitors in potato | Q43010984 | ||
Altering expression of benzoic acid/salicylic acid carboxyl methyltransferase 1 compromises systemic acquired resistance and PAMP-triggered immunity in arabidopsis | Q43230839 | ||
A novel plant ferredoxin-like protein and the regulator Hor are quorum-sensing targets in the plant pathogen Erwinia carotovora | Q43442920 | ||
Differential pathogenicity and genetic diversity among Pectobacterium carotovorum ssp. carotovorum isolates from monocot and dicot hosts support early genomic divergence within this taxon | Q43474733 | ||
Quorum sensing controls the synthesis of virulence factors by modulating rsmA gene expression in Erwinia carotovora subsp. carotovora | Q43613673 | ||
Niche-specificity and the variable fraction of the Pectobacterium pan-genome. | Q43678047 | ||
Citrate uptake into Pectobacterium atrosepticum is critical for bacterial virulence | Q43777612 | ||
Infection-blocking genes of a symbiotic Rhizobium leguminosarum strain that are involved in temperature-dependent protein secretion | Q44036717 | ||
Microarray profiling of host-extract-induced genes and characterization of the type VI secretion cluster in the potato pathogen Pectobacterium atrosepticum | Q44068100 | ||
The PmrA‐PmrB two‐component system responding to acidic pH and iron controls virulence in the plant pathogen Erwinia carotovora ssp. carotovora | Q44581662 | ||
Role of RpoS in virulence and stress tolerance of the plant pathogen Erwinia carotovora subsp. carotovora | Q44776661 | ||
Erwinia carotovora subsp. wasabiae subsp. nov. Isolated from Diseased Rhizomes and Fibrous Roots of Japanese Horseradish (Eutrema wasabi Maxim.) | Q45311290 | ||
Aniline-induced tryptophan production and identification of indole derivatives from three purple bacteria | Q45568880 | ||
hrp genes of Erwinia chrysanthemi 3937 are important virulence factors. | Q46039068 | ||
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes | Q46309318 | ||
Novel quorum-sensing-controlled genes in Erwinia carotovora subsp. carotovora: identification of a fungal elicitor homologue in a soft-rotting bacterium | Q46436255 | ||
Methyl salicylate is a critical mobile signal for plant systemic acquired resistance | Q46966163 | ||
Two-component regulators involved in the global control of virulence in Erwinia carotovora subsp. carotovora | Q47796522 | ||
Complete genome sequence of the fire blight pathogen Erwinia amylovora CFBP 1430 and comparison to other Erwinia spp. | Q47806445 | ||
A two-component regulatory system, pehR-pehS, controls endopolygalacturonase production and virulence in the plant pathogen Erwinia carotovora subsp. carotovora | Q47871403 | ||
The response regulator expM is essential for the virulence of Erwinia carotovora subsp. carotovora and acts negatively on the sigma factor RpoS (sigma s). | Q47930812 | ||
Isolation of an extracellular protease gene of Erwinia carotovora subsp. carotovora strain SCC3193 by transposon mutagenesis and the role of protease in phytopathogenicity | Q47934828 | ||
Erwinia carotovora DsbA mutants: evidence for a periplasmic-stress signal transduction system affecting transcription of genes encoding secreted proteins | Q47934850 | ||
Mutation in a gene required for lipopolysaccharide and enterobacterial common antigen biosynthesis affects virulence in the plant pathogen Erwinia carotovora subsp. atroseptica | Q47958745 | ||
Transcriptional activation of Salmonella typhimurium invasion genes by a member of the phosphorylated response-regulator superfamily. | Q48058213 | ||
Structure and regulation of the Erwinia carotovora subspecies carotovora SCC3193 cellulase gene celV1 and the role of cellulase in phytopathogenicity | Q48074566 | ||
Cooperation of two distinct ExpR regulators controls quorum sensing specificity and virulence in the plant pathogen Erwinia carotovora | Q48086533 | ||
Operon prediction without a training set. | Q48513812 | ||
IslandPath: aiding detection of genomic islands in prokaryotes. | Q48615472 | ||
Genomewide identification of proteins secreted by the Hrp type III protein secretion system of Pseudomonas syringae pv. tomato DC3000 | Q24530644 | ||
Identification of a conserved bacterial protein secretion system in Vibrio cholerae using the Dictyostelium host model system | Q24537443 | ||
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution | Q24555229 | ||
A small diffusible signal molecule is responsible for the global control of virulence and exoenzyme production in the plant pathogen Erwinia carotovora | Q24564606 | ||
MUSCLE: multiple sequence alignment with high accuracy and high throughput | Q24613456 | ||
A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus | Q24651984 | ||
Genetic determinants of self identity and social recognition in bacteria | Q24652691 | ||
Molecular archaeology of the Escherichia coli genome | Q24681270 | ||
Phylogenetic analysis of bacterial and archaeal arsC gene sequences suggests an ancient, common origin for arsenate reductase | Q24793636 | ||
Selection of informative clusters from hierarchical cluster tree with gene classes | Q24798399 | ||
Clustal W and Clustal X version 2.0 | Q27860517 | ||
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes | Q27860838 | ||
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products | Q27860842 | ||
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes | Q27860860 | ||
The COG database: a tool for genome-scale analysis of protein functions and evolution | Q27936664 | ||
Combo: a whole genome comparative browser | Q28241062 | ||
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation | Q28269158 | ||
Protein-based organelles in bacteria: carboxysomes and related microcompartments | Q28289715 | ||
iRsp1095: a genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network | Q28741644 | ||
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees | Q29547265 | ||
A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants | Q29547327 | ||
InterProScan--an integration platform for the signature-recognition methods in InterPro | Q29547336 | ||
A new bioinformatics analysis tools framework at EMBL-EBI. | Q29547584 | ||
Prodigal: prokaryotic gene recognition and translation initiation site identification | Q29547611 | ||
Type IV pili and twitching motility | Q29615262 | ||
Horizontal gene transfer in prokaryotes: quantification and classification | Q29616017 | ||
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement | Q29616598 | ||
Elevation of three subspecies of Pectobacterium carotovorum to species level: Pectobacterium atrosepticum sp. nov., Pectobacterium betavasculorum sp. nov. and Pectobacterium wasabiae sp. nov | Q30787846 | ||
Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement | Q30962327 | ||
HemK, a class of protein methyl transferase with similarity to DNA methyl transferases, methylates polypeptide chain release factors, and hemK knockout induces defects in translational termination | Q31035897 | ||
Phylogenetic position of phytopathogens within the Enterobacteriaceae | Q31996564 | ||
Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models. | Q33236758 | ||
Bacterial endophytes and their interactions with hosts. | Q33253636 | ||
Bacterial endophytes: recent developments and applications | Q33306981 | ||
Quorum sensing coordinates brute force and stealth modes of infection in the plant pathogen Pectobacterium atrosepticum | Q33345234 | ||
Evaluation of genomic island predictors using a comparative genomics approach | Q33357712 | ||
BioMart Central Portal--unified access to biological data | Q33440110 | ||
Genome sequence of the plant growth promoting endophytic bacterium Enterobacter sp. 638 | Q33582213 | ||
Burkholderia type VI secretion systems have distinct roles in eukaryotic and bacterial cell interactions | Q33701806 | ||
Rhs elements comprise three subfamilies which diverged prior to acquisition by Escherichia coli | Q33735566 | ||
Floral benzenoid carboxyl methyltransferases: from in vitro to in planta function | Q33829846 | ||
Iron metabolism in pathogenic bacteria. | Q33920195 | ||
Identification of functional toxin/immunity genes linked to contact-dependent growth inhibition (CDI) and rearrangement hotspot (Rhs) systems | Q33987595 | ||
A HilA-independent pathway to Salmonella typhimurium invasion gene transcription | Q33992012 | ||
Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052. | Q33994087 | ||
Whole-genome shotgun optical mapping of Rhodospirillum rubrum | Q33995823 | ||
The 3-hydroxy-2-butanone pathway is required for Pectobacterium carotovorum pathogenesis | Q34005402 | ||
Genetic analysis of anti-amoebae and anti-bacterial activities of the type VI secretion system in Vibrio cholerae | Q34016417 | ||
Bacterial microcompartment organelles: protein shell structure and evolution | Q34101360 | ||
Ethanolamine utilization in bacterial pathogens: roles and regulation | Q34178606 | ||
Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes | Q34263261 | ||
Protein database searches using compositionally adjusted substitution matrices | Q34293765 | ||
Type III secretion system effector proteins: double agents in bacterial disease and plant defense | Q34337243 | ||
Arsenic and selenium in microbial metabolism | Q34526851 | ||
Bacterial blight of soybean: regulation of a pathogen gene determining host cultivar specificity | Q34544077 | ||
RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. | Q34586477 | ||
Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida. | Q34663919 | ||
Phylogeny and virulence of naturally occurring type III secretion system-deficient Pectobacterium strains | Q34978874 | ||
A unique arabinose 5-phosphate isomerase found within a genomic island associated with the uropathogenicity of Escherichia coli CFT073. | Q35096247 | ||
Large-scale comparative phenotypic and genomic analyses reveal ecological preferences of shewanella species and identify metabolic pathways conserved at the genus level | Q35139019 | ||
Type IV pilus structure and bacterial pathogenicity | Q35752406 | ||
Genomic islands in pathogenic and environmental microorganisms | Q35752419 | ||
Triple mutants uncover three new genes required for social motility in Myxococcus xanthus | Q36052339 | ||
Rotting softly and stealthily. | Q36170008 | ||
The biology of restriction and anti-restriction | Q36175695 | ||
Mapping and complementation studies of the gene for release factor 1. | Q36261514 | ||
Comparative genomics reveals what makes an enterobacterial plant pathogen | Q36480519 | ||
Ferritins, bacterial virulence and plant defence | Q36704734 | ||
A pleiotropic reduced virulence (Rvi-) mutant of Erwinia carotovora subspecies atroseptica is defective in flagella assembly proteins that are conserved in plant and animal bacterial pathogens. | Q36774328 | ||
Mutualism and pathogenesis in Xenorhabdus and Photorhabdus: two roads to the same destination | Q36817287 | ||
Priming, induction and modulation of plant defence responses by bacterial lipopolysaccharides. | Q36875610 | ||
Uropathogenic Escherichia coli CFT073 is adapted to acetatogenic growth but does not require acetate during murine urinary tract infection | Q36974387 | ||
Plants as a habitat for beneficial and/or human pathogenic bacteria | Q37235278 | ||
Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors. | Q37285616 | ||
Host range and molecular phylogenies of the soft rot enterobacterial genera pectobacterium and dickeya. | Q37305946 | ||
Secreted proteins from Ralstonia solanacearum: a hundred tricks to kill a plant. | Q37368646 | ||
Pseudomonas syringae type III secretion system effectors: repertoires in search of functions | Q37377069 | ||
Lifestyles of the effector rich: genome-enabled characterization of bacterial plant pathogens | Q37514656 | ||
Soft rot erwiniae: from genes to genomes | Q37766931 | ||
The type VI secretion system: a multipurpose delivery system with a phage-like machinery | Q37848429 | ||
Overexpression of salicylic acid carboxyl methyltransferase reduces salicylic acid-mediated pathogen resistance in Arabidopsis thaliana. | Q38506621 | ||
The Analysis of Multiple Genome Comparisons in Genus Escherichia and Its Application to the Discovery of Uncharacterised Metabolic Genes in Uropathogenic Escherichia coli CFT073. | Q39369887 | ||
SANS: high-throughput retrieval of protein sequences allowing 50% mismatches | Q39555761 | ||
Expression of genes kdsA and kdsB involved in 3-deoxy-D-manno-octulosonic acid metabolism and biosynthesis of enterobacterial lipopolysaccharide is growth phase regulated primarily at the transcriptional level in Escherichia coli K-12. | Q39837824 | ||
High-affinity iron uptake systems present in Erwinia carotovora subsp. carotovora include the hydroxamate siderophore aerobactin | Q39934022 | ||
DsbA plays a critical and multifaceted role in the production of secreted virulence factors by the phytopathogen Erwinia carotovora subsp. atroseptica. | Q40452562 | ||
A putative DNA adenine methyltransferase is involved in Yersinia pseudotuberculosis pathogenicity | Q41447868 | ||
Molecular cloning and characterization of 13 out genes from Erwinia carotovora subspecies carotovora: genes encoding members of a general secretion pathway (GSP) widespread in gram-negative bacteria | Q41503359 | ||
Pectobacterium carotovorum elicits plant cell death with DspE/F but the P. carotovorum DspE does not suppress callose or induce expression of plant genes early in plant-microbe interactions. | Q42486382 | ||
Quorum sensing in the plant pathogen Erwinia carotovora subsp. carotovora: the role of expR(Ecc). | Q42623547 | ||
??? | Q28261323 | ||
P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
P6216 | copyright status | copyrighted | Q50423863 |
P433 | issue | 11 | |
P921 | main subject | phylogenetics | Q171184 |
Pectobacterium wasabiae | Q16987607 | ||
P304 | page(s) | e1003013 | |
P577 | publication date | 2012-11-01 | |
P1433 | published in | PLOS Pathogens | Q283209 |
P1476 | title | Revised phylogeny and novel horizontally acquired virulence determinants of the model soft rot phytopathogen Pectobacterium wasabiae SCC3193 | |
P478 | volume | 8 |
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