RppH-dependent pyrophosphohydrolysis of mRNAs is regulated by direct interaction with DapF in Escherichia coli

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RppH-dependent pyrophosphohydrolysis of mRNAs is regulated by direct interaction with DapF in Escherichia coli is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKU926
P932PMC publication ID4227774
P698PubMed publication ID25313159
P5875ResearchGate publication ID266949431

P50authorYeong-Jae SeokQ56910426
P2093author name stringChang-Ro Lee
Yeon-Ran Kim
Miri Kim
Young-Ha Park
P2860cites workThree new Nudix hydrolases from Escherichia coli.Q54463694
A thioredoxin gene fusion expression system that circumvents inclusion body formation in the E. coli cytoplasm.Q54663005
Orf186 Represents a New Member of the Nudix Hydrolases, Active on Adenosine(5′)triphospho(5′)adenosine, ADP-ribose, and NADHQ56904866
The Purification and Characterization of Escherichia coli EnolaseQ69954059
Evidence for two functional gal promoters in intact Escherichia coli cellsQ72912310
High affinity binding and allosteric regulation of Escherichia coli glycogen phosphorylase by the histidine phosphocarrier protein, HPrQ73797236
Global analysis of Escherichia coli RNA degradosome function using DNA microarraysQ36852086
Specificity of RppH-dependent RNA degradation in Bacillus subtilisQ36895720
HPr antagonizes the anti-σ70 activity of Rsd in Escherichia coli.Q37421362
Regulatory roles of the bacterial nitrogen-related phosphotransferase systemQ37702617
Structural and functional control of the eukaryotic mRNA decapping machinery.Q38071446
RutR is the uracil/thymine-sensing master regulator of a set of genes for synthesis and degradation of pyrimidines.Q38297562
Null Mutations in a Nudix Gene, ygdP , Implicate an Alarmone Response in a Novel Suppression of Hybrid JammingQ40170950
The gene ygdP, associated with the invasiveness of Escherichia coli K1, designates a Nudix hydrolase, Orf176, active on adenosine (5')-pentaphospho-(5')-adenosine (Ap5A).Q42655832
Potassium mediates Escherichia coli enzyme IIA(Ntr) -dependent regulation of sigma factor selectivity.Q42782216
Regulation of dinucleoside polyphosphate pools by the YgdP and ApaH hydrolases is essential for the ability of Salmonella enterica serovar typhimurium to invade cultured mammalian cellsQ44489722
A novel fermentation/respiration switch protein regulated by enzyme IIAGlc in Escherichia coliQ44915297
Expression of ptsG encoding the major glucose transporter is regulated by ArcA in Escherichia coliQ44976896
Enolase in the RNA degradosome plays a crucial role in the rapid decay of glucose transporter mRNA in the response to phosphosugar stress in Escherichia coliQ45135642
Requirement of the dephospho-form of enzyme IIANtr for derepression of Escherichia coli K-12 ilvBN expressionQ46704780
Identification and characterization of stationary phase inducible genes in Escherichia coliQ47672977
The gene, ialA, associated with the invasion of human erythrocytes by Bartonella bacilliformis, designates a nudix hydrolase active on dinucleoside 5'-polyphosphatesQ47996330
AppppA and related adenylylated nucleotides are synthesized as a consequence of oxidation stressQ50208564
L,L-diaminopimelate aminotransferase, a trans-kingdom enzyme shared by Chlamydia and plants for synthesis of diaminopimelate/lysineQ24674785
Dimerization of Bacterial Diaminopimelate Epimerase Is Essential for CatalysisQ27676487
Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substratesQ27677508
Studies on the ADP-ribose pyrophosphatase subfamily of the nudix hydrolases and tentative identification of trgB, a gene associated with tellurite resistance.Q27934562
The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motifQ27936654
The Escherichia coli glucose transporter enzyme IICB(Glc) recruits the global repressor Mlc.Q28346030
Characterization of Mycobacterium tuberculosis diaminopimelic acid epimerase: paired cysteine residues are crucial for racemizationQ28486888
Expression of recombinant diaminopimelate epimerase in Escherichia coli. Isolation and inhibition with an irreversible inhibitorQ28492871
The MutT proteins or "Nudix" hydrolases, a family of versatile, widely distributed, "housecleaning" enzymesQ28573848
An efficient recombination system for chromosome engineering in Escherichia coliQ29615038
Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5'-->3' digestion of the transcriptQ29615273
A bacterial two-hybrid system based on a reconstituted signal transduction pathwayQ29617862
Identification of Escherichia coli K1 genes contributing to human brain microvascular endothelial cell invasion by differential fluorescence inductionQ30856936
Orf135 from Escherichia coli Is a Nudix hydrolase specific for CTP, dCTP, and 5-methyl-dCTP.Q31505388
Legionella pneumophila NudA Is a Nudix hydrolase and virulence factorQ34033234
The Nudix hydrolase superfamilyQ34479614
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.Q34621048
Structural insights into stereochemical inversion by diaminopimelate epimerase: an antibacterial drug targetQ34695310
The bacterial enzyme RppH triggers messenger RNA degradation by 5' pyrophosphate removal.Q34737544
An RNA pyrophosphohydrolase triggers 5'-exonucleolytic degradation of mRNA in Bacillus subtilis.Q35222469
Characterization of a two-gene locus from Bartonella bacilliformis associated with the ability to invade human erythrocytesQ35404821
Escherichia coli enzyme IIANtr regulates the K+ transporter TrkA.Q35630541
Hyperexpression and purification of Escherichia coli adenylate cyclase using a vector designed for expression of lethal gene productsQ35963082
osmY, a new hyperosmotically inducible gene, encodes a periplasmic protein in Escherichia coliQ36112059
Incorporation of LL-diaminopimelic acid into peptidoglycan of Escherichia coli mutants lacking diaminopimelate epimerase encoded by dapF.Q36202185
Molecular cloning, characterization, and chromosomal localization of dapF, the Escherichia coli gene for diaminopimelate epimeraseQ36232828
Differential control of the rate of 5'-end-dependent mRNA degradation in Escherichia coliQ36363637
Initiation of RNA decay in Escherichia coli by 5' pyrophosphate removalQ36377532
Reciprocal regulation of the autophosphorylation of enzyme INtr by glutamine and α-ketoglutarate in Escherichia coliQ36788144
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue20
P407language of work or nameEnglishQ1860
P921main subjectEscherichia coliQ25419
P304page(s)12746-12757
P577publication date2014-10-13
P1433published inNucleic Acids ResearchQ135122
P1476titleRppH-dependent pyrophosphohydrolysis of mRNAs is regulated by direct interaction with DapF in Escherichia coli
P478volume42

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cites work (P2860)
Q50547891A Novel RNA Phosphorylation State Enables 5' End-Dependent Degradation in Escherichia coli.
Q89182951DapF stabilizes the substrate-favoring conformation of RppH to stimulate its RNA-pyrophosphohydrolase activity in Escherichia coli
Q36255002Dephosphorylated NPr is involved in an envelope stress response of Escherichia coli
Q64264203Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology
Q50243802Effect of the RNA pyrophosphohydrolase RppH on envelope integrity in Escherichia coli
Q39740674Glucose induces delocalization of a flagellar biosynthesis protein from the flagellated pole
Q52605496Importance of a diphosphorylated intermediate for RppH-dependent RNA degradation.
Q57063429Noncanonical features and modifications on the 5'-end of bacterial sRNAs and mRNAs
Q92785417Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH
Q64922395Rsd balances (p)ppGpp level by stimulating the hydrolase activity of SpoT during carbon source downshift in Escherichia coli.
Q88588532Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF
Q37277622Structural basis of prokaryotic NAD-RNA decapping by NudC.
Q37213310Structure and function of the bacterial decapping enzyme NudC.
Q37658012The general PTS component HPr determines the preference for glucose over mannitol.

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