| scholarly article | Q13442814 |
| P356 | DOI | 10.1534/G3.116.034298 |
| P8608 | Fatcat ID | release_236skqkkmbdore7yqtushtkdu4 |
| P932 | PMC publication ID | 5217103 |
| P698 | PubMed publication ID | 27856696 |
| P50 | author | Matthew S. Sachs | Q55137576 |
| Cheng Wu | Q88783927 | ||
| Deborah Bell-Pedersen | Q88783929 | ||
| James Galagan | Q30361518 | ||
| Erin Bredeweg | Q43139828 | ||
| P2093 | author name string | Michael Freitag | |
| James E Galagan | |||
| Kristina M Smith | |||
| Jay C Dunlap | |||
| Jennifer M Hurley | |||
| Anna Lyubetskaya | |||
| Matthew Peterson | |||
| Elham Azizi | |||
| Jillian M Emerson | |||
| Teresa M Lamb | |||
| Rigzin Dekhang | |||
| Nirmala Karunarathna | |||
| Oneida Ibarra | |||
| P2860 | cites work | Trimethylated lysine 9 of histone H3 is a mark for DNA methylation in Neurospora crassa | Q44393142 |
| Identification and characterization of LFD1, a novel protein involved in membrane merger during cell fusion in Neurospora crassa. | Q46455136 | ||
| Overexpression of White Collar-1 (WC-1) activates circadian clock-associated genes, but is not sufficient to induce most light-regulated gene expression in Neurospora crassa | Q48287479 | ||
| Light-independent phosphorylation of WHITE COLLAR-1 regulates its function in the Neurospora circadian negative feedback loop | Q50485868 | ||
| WHITE COLLAR-1, a multifunctional neurospora protein involved in the circadian feedback loops, light sensing, and transcription repression of wc-2. | Q50497025 | ||
| Genomic binding and transcriptional regulation by the Drosophila Myc and Mnt transcription factors. | Q52670682 | ||
| HAM-2 and HAM-3 are central for the assembly of the Neurospora STRIPAK complex at the nuclear envelope and regulate nuclear accumulation of the MAP kinase MAK-1 in a MAK-2-dependent manner. | Q54409601 | ||
| Identification of NoxD/Pro41 as the homologue of the p22phoxNADPH oxidase subunit in fungi | Q58118405 | ||
| Excitable behavior can explain the “ping‐pong” mode of communication between cells using the same chemoattractant | Q58487285 | ||
| A complex photoreceptor system mediates the regulation by light of the conidiation genes con-10 and con-6 in Neurospora crassa | Q61447068 | ||
| A global circadian repressor controls antiphasic expression of metabolic genes in Neurospora | Q62962042 | ||
| Sulfate transport in Neurospora crassa: regulation, turnover, and cellular localization of the CYS-14 protein | Q63016330 | ||
| Transcriptional feedback of Neurospora circadian clock gene by phosphorylation-dependent inactivation of its transcription factor | Q63035161 | ||
| From biological clock to biological rhythms | Q21194895 | ||
| The genome sequence of the filamentous fungus Neurospora crassa | Q22122516 | ||
| Regulation of the Neurospora circadian clock by an RNA helicase | Q24557449 | ||
| Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data | Q24595121 | ||
| The incoherent feed-forward loop can generate non-monotonic input functions for genes | Q24644242 | ||
| Mapping short DNA sequencing reads and calling variants using mapping quality scores | Q24644612 | ||
| Phosphorylation of the Neurospora clock protein FREQUENCY determines its degradation rate and strongly influences the period length of the circadian clock | Q24648053 | ||
| Fast and accurate short read alignment with Burrows-Wheeler transform | Q24653853 | ||
| MEME: discovering and analyzing DNA and protein sequence motifs | Q24680110 | ||
| Statistical significance for genomewide studies | Q24681264 | ||
| The generic genome browser: a building block for a model organism system database | Q24682395 | ||
| Structure and function of the feed-forward loop network motif | Q24683513 | ||
| The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes | Q24701143 | ||
| Diverse roles for MAPK signaling in circadian clocks | Q26865412 | ||
| HAM-5 functions as a MAP kinase scaffold during cell fusion in Neurospora crassa | Q27311792 | ||
| Fungal communication requires the MAK-2 pathway elements STE-20 and RAS-2, the NRC-1 adapter STE-50 and the MAP kinase scaffold HAM-5 | Q27312075 | ||
| The NDR Kinase Scaffold HYM1/MO25 Is Essential for MAK2 MAP Kinase Signaling in Neurospora crassa | Q27331567 | ||
| The Sequence Alignment/Map format and SAMtools | Q27860966 | ||
| Emerging models for the molecular basis of mammalian circadian timing | Q28249506 | ||
| Characterization of the Neurospora crassa cell fusion proteins, HAM-6, HAM-7, HAM-8, HAM-9, HAM-10, AMPH-1 and WHI-2 | Q28543515 | ||
| The Mycobacterium tuberculosis regulatory network and hypoxia | Q28655962 | ||
| Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complex | Q28748987 | ||
| Circadian rhythms from multiple oscillators: lessons from diverse organisms | Q28751778 | ||
| Differential analysis of gene regulation at transcript resolution with RNA-seq | Q29614490 | ||
| Primer3--new capabilities and interfaces | Q29614816 | ||
| Network motifs: theory and experimental approaches | Q29615325 | ||
| GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes | Q29616254 | ||
| Circadian integration of metabolism and energetics | Q29619638 | ||
| Fully codon-optimized luciferase uncovers novel temperature characteristics of the Neurospora clock | Q30481173 | ||
| Oscillatory recruitment of signaling proteins to cell tips promotes coordinated behavior during cell fusion | Q30491788 | ||
| Library preparation and data analysis packages for rapid genome sequencing | Q30573417 | ||
| The pro1(+) gene from Sordaria macrospora encodes a C6 zinc finger transcription factor required for fruiting body development | Q30678336 | ||
| Online period estimation and determination of rhythmicity in circadian data, using the BioDare data infrastructure. | Q30813546 | ||
| Strengths and limitations of period estimation methods for circadian data. | Q30817013 | ||
| WSC-1 and HAM-7 Are MAK-1 MAP Kinase Pathway Sensors Required for Cell Wall Integrity and Hyphal Fusion in Neurospora crassa | Q31082656 | ||
| Systems biology of the clock in Neurospora crassa | Q33366517 | ||
| White collar-1, a central regulator of blue light responses in Neurospora, is a zinc finger protein | Q33367621 | ||
| Genome-wide high throughput analysis of DNA methylation in eukaryotes | Q33379320 | ||
| Chronobiology and obesity: Interactions between circadian rhythms and energy regulation | Q33578696 | ||
| Multi-targeted priming for genome-wide gene expression assays | Q33661066 | ||
| FRQ-interacting RNA helicase mediates negative and positive feedback in the Neurospora circadian clock | Q33688816 | ||
| Identification and Characterization of Genes Required for Cell-to-Cell Fusion in Neurospora crassa | Q33930288 | ||
| WC-2 mediates WC-1-FRQ interaction within the PAS protein-linked circadian feedback loop of Neurospora | Q33935905 | ||
| Molecular Genetic Analysis of Circadian Timekeeping in Drosophila | Q33938983 | ||
| clusterMaker: a multi-algorithm clustering plugin for Cytoscape | Q34070756 | ||
| Direct transcriptional control of a p38 MAPK pathway by the circadian clock in Neurospora crassa | Q34075515 | ||
| White collar-1, a DNA binding transcription factor and a light sensor | Q34137065 | ||
| The Saccharomyces cerevisiae PRM1 homolog in Neurospora crassa is involved in vegetative and sexual cell fusion events but also has postfertilization functions. | Q37102613 | ||
| A high-density single nucleotide polymorphism map for Neurospora crassa | Q37102692 | ||
| Genome-wide analysis of light-inducible responses reveals hierarchical light signalling in Neurospora | Q37196142 | ||
| Early colony establishment in Neurospora crassa requires a MAP kinase regulatory network. | Q37269829 | ||
| Cell fusion in the filamentous fungus, Neurospora crassa | Q37315565 | ||
| Regulation of gene expression in Neurospora crassa with a copper responsive promoter | Q37366559 | ||
| ChIP-Seq and the Complexity of Bacterial Transcriptional Regulation | Q38043947 | ||
| Interactive features of proteins composing eukaryotic circadian clocks | Q38218231 | ||
| Circadian clock-mediated control of stem cell division and differentiation: beyond night and day. | Q38237625 | ||
| Signal exchange and integration during self-fusion in filamentous fungi | Q38794736 | ||
| Regulation of sulfur and nitrogen metabolism in filamentous fungi | Q40788532 | ||
| Circadian Activation of the Mitogen-Activated Protein Kinase MAK-1 Facilitates Rhythms in Clock-Controlled Genes in Neurospora crassa | Q42529116 | ||
| Circadian activity and abundance rhythms of the Neurospora clock transcription factor WCC associated with rapid nucleo-cytoplasmic shuttling | Q43223951 | ||
| Genes encoding a striatin-like protein (ham-3) and a forkhead associated protein (ham-4) are required for hyphal fusion in Neurospora crassa | Q44000529 | ||
| White Collar-1, a circadian blue light photoreceptor, binding to the frequency promoter | Q34137072 | ||
| Roles for WHITE COLLAR-1 in circadian and general photoperception in Neurospora crassa | Q34177192 | ||
| Genome-wide characterization of light-regulated genes in Neurospora crassa. | Q34213465 | ||
| FWD1-mediated degradation of FREQUENCY in Neurospora establishes a conserved mechanism for circadian clock regulation | Q34225555 | ||
| The Coherent Feedforward Loop Serves as a Sign-sensitive Delay Element in Transcription Networks | Q34275513 | ||
| Alternative initiation of translation and time-specific phosphorylation yield multiple forms of the essential clock protein FREQUENCY. | Q34426042 | ||
| PAS domain-mediated WC-1/WC-2 interaction is essential for maintaining the steady-state level of WC-1 and the function of both proteins in circadian clock and light responses of Neurospora | Q34440702 | ||
| A circadian gene expression atlas in mammals: implications for biology and medicine | Q34445166 | ||
| Circadian rhythms. Decoupling circadian clock protein turnover from circadian period determination | Q34460462 | ||
| How fungi keep time: circadian system in Neurospora and other fungi | Q34576607 | ||
| The ham-2 locus, encoding a putative transmembrane protein, is required for hyphal fusion in Neurospora crassa. | Q34614140 | ||
| The frequency gene is required for temperature-dependent regulation of many clock-controlled genes in Neurospora crassa | Q34617962 | ||
| Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential. | Q34661168 | ||
| A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors | Q34696285 | ||
| Genetics and neurobiology of circadian clocks in mammals | Q34770761 | ||
| A circadian clock in Neurospora: how genes and proteins cooperate to produce a sustained, entrainable, and compensated biological oscillator with a period of about a day | Q34784363 | ||
| Quantitative proteomics reveals a dynamic interactome and phase-specific phosphorylation in the Neurospora circadian clock | Q34981580 | ||
| MEME-ChIP: motif analysis of large DNA datasets | Q35019674 | ||
| The functional consequences of variation in transcription factor binding. | Q35112922 | ||
| DNA microarray analyses of circadian timing: the genomic basis of biological time | Q35216930 | ||
| Combinatorial control of light induced chromatin remodeling and gene activation in Neurospora | Q35231141 | ||
| Global Analysis of Serine-Threonine Protein Kinase Genes in Neurospora crassa | Q35530402 | ||
| Dawn- and dusk-phased circadian transcription rhythms coordinate anabolic and catabolic functions in Neurospora | Q35575424 | ||
| Combinatorial complexity in a transcriptionally centered signaling hub in Arabidopsis. | Q36104408 | ||
| Circadian rhythmicity mediated by temporal regulation of the activity of p38 MAPK | Q36156910 | ||
| Distinct cis-acting elements mediate clock, light, and developmental regulation of the Neurospora crassa eas (ccg-2) gene | Q36557031 | ||
| Nascent-Seq analysis of Drosophila cycling gene expression | Q36567931 | ||
| The rhythms of life: circadian output pathways in Neurospora | Q36654626 | ||
| Fungal photoreceptors: sensory molecules for fungal development and behaviour | Q36869818 | ||
| Chemotropism and Cell Fusion in Neurospora crassa Relies on the Formation of Distinct Protein Complexes by HAM-5 and a Novel Protein HAM-14 | Q36875634 | ||
| A connection between MAPK pathways and circadian clocks | Q36959485 | ||
| Mitogen-activated protein kinase cascade required for regulation of development and secondary metabolism in Neurospora crassa | Q36994309 | ||
| Multiple oscillators regulate circadian gene expression in Neurospora | Q37089665 | ||
| P4510 | describes a project that uses | ImageJ | Q1659584 |
| Cytoscape | Q3699942 | ||
| P433 | issue | 1 | |
| P1104 | number of pages | 14 | |
| P304 | page(s) | 129-142 | |
| P577 | publication date | 2017-01-05 | |
| P1433 | published in | G3 | Q5512701 |
| P1476 | title | The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell Fusion | |
| P478 | volume | 7 |
| Q42373371 | A Cellular Fusion Cascade Regulated by LaeA Is Required for Sclerotial Development in Aspergillus flavus |
| Q48206937 | A HAD family phosphatase CSP-6 regulates the circadian output pathway in Neurospora crassa |
| Q64102266 | Communicate and Fuse: How Filamentous Fungi Establish and Maintain an Interconnected Mycelial Network |
| Q52324539 | Fungal Morphogenesis, from the Polarized Growth of Hyphae to Complex Reproduction and Infection Structures. |
| Q58580243 | Gene Co-expression Network Reveals Potential New Genes Related to Sugarcane Bagasse Degradation in RUT-30 |
| Q64061762 | Histone H3 lysine 4 methyltransferase is required for facultative heterochromatin at specific loci |
| Q54980677 | Regulation of Cell-to-Cell Communication and Cell Wall Integrity by a Network of MAP Kinase Pathways and Transcription Factors in Neurospora crassa. |
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