Genomic and functional analyses of the gentisate and protocatechuate ring-cleavage pathways and related 3-hydroxybenzoate and 4-hydroxybenzoate peripheral pathways in Burkholderia xenovorans LB400.

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Genomic and functional analyses of the gentisate and protocatechuate ring-cleavage pathways and related 3-hydroxybenzoate and 4-hydroxybenzoate peripheral pathways in Burkholderia xenovorans LB400. is …
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scholarly articleQ13442814

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P819ADS bibcode2013PLoSO...856038R
P356DOI10.1371/JOURNAL.PONE.0056038
P8608Fatcat IDrelease_gp5ivjm75zehxep2cllmuk35fy
P932PMC publication ID3572157
P698PubMed publication ID23418504
P5875ResearchGate publication ID235650636

P2093author name stringMichael Seeger
Loreine Agulló
María José Romero-Silva
Valentina Méndez
P2860cites workMetabolic function and properties of 4-hydroxyphenylacetic acid 1-hydroxylase from Pseudomonas acidovoransQ24634429
3-Hydroxybenzoate 4-hydroxylase from Pseudomonas testosteroniQ28237205
4-Hydroxybenzoate hydroxylase from Pseudomonas sp. CBS3. Purification, characterization, gene cloning, sequence analysis and assignment of structural features determining the coenzyme specificityQ28284814
Evidence for isofunctional enzymes used in m-cresol and 2,5-xylenol degradation via the gentisate pathway in Pseudomonas alcaligenesQ28367706
Conversion of chlorobiphenyls into phenylhexadienoates and benzoates by the enzymes of the upper pathway for polychlorobiphenyl degradation encoded by the bph locus of Pseudomonas sp. strain LB400Q28367865
The LysR-type PcaQ protein regulates expression of a protocatechuate-inducible ABC-type transport system in Sinorhizobium melilotiQ29346922
Molecular biology of the LysR family of transcriptional regulatorsQ29615198
Novel pathway of salicylate degradation by Streptomyces sp. strain WA46.Q33199036
Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134.Q33358902
The homogentisate and homoprotocatechuate central pathways are involved in 3- and 4-hydroxyphenylacetate degradation by Burkholderia xenovorans LB400.Q33851651
Functional identification of novel genes involved in the glutathione-independent gentisate pathway in Corynebacterium glutamicumQ33884777
Key aromatic-ring-cleaving enzyme, protocatechuate 3,4-dioxygenase, in the ecologically important marine Roseobacter lineageQ33987978
Genomic analysis of the potential for aromatic compounds biodegradation in BurkholderialesQ34057523
3-Carboxy-cis,cis-muconate lactonizing enzyme from Pseudomonas putida is homologous to the class II fumarase family: a new reaction in the evolution of a mechanistic motifQ34252495
Functional characterization of a gene cluster involved in gentisate catabolism in Rhodococcus sp. strain NCIMB 12038.Q54373574
In vitro formation of a catabolic plasmid carrying Klebsiella pneumoniae DNA that allows growth of Escherichia coli K-12 on 3-hydroxybenzoate.Q54584368
Catabolism of 3-hydroxybenzoate by the gentisate pathway in Klebsiella pneumoniae M5a1Q68629010
Gentisate 1,2-dioxygenase from Pseudomonas. Substrate coordination to active site Fe2+ and mechanism of turnoverQ68641666
Pseudomonas cepacia 3-hydroxybenzoate 6-hydroxylase: induction, purification, and characterizationQ68983728
Purification and biochemical characterization of gentisate 1,2-dioxygenase from Klebsiella pneumoniae M5a1Q71533574
NIH shift in the hydroxylation of aromatic compounds by the ammonia-oxidizing bacterium Nitrosomonas europaea. Evidence against an arene oxide intermediateQ71715197
The metabolism of aromatic acids by Pseudomonas testosteroni and P. acidovoransQ71932800
Purification and characterization of 4-hydroxybenzoate 3-hydroxylase from aKlebsiella pneumoniae mutant strainQ71987054
Antioxidant compounds improved PCB-degradation by Burkholderia xenovorans strain LB400Q82812038
MarR homologs with urate-binding signatureQ34724087
Complete genome sequence of the plant growth-promoting endophyte Burkholderia phytofirmans strain PsJN.Q35096389
Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatilityQ35108186
PcaK, a high-affinity permease for the aromatic compounds 4-hydroxybenzoate and protocatechuate from Pseudomonas putidaQ35627831
Identification of the pcaRKF gene cluster from Pseudomonas putida: involvement in chemotaxis, biodegradation, and transport of 4-hydroxybenzoateQ35979746
DNA sequences of genes encoding Acinetobacter calcoaceticus protocatechuate 3,4-dioxygenase: evidence indicating shuffling of genes and of DNA sequences within genes during their evolutionary divergence.Q36158267
The complete genome of Comamonas testosteroni reveals its genetic adaptations to changing environmentsQ37410160
Quantitation of proteinQ37628067
Regiospecificity of dioxygenation of di- to pentachlorobiphenyls and their degradation to chlorobenzoates by the bph-encoded catabolic pathway of Burkholderia sp. strain LB400.Q39483076
Dehalogenation, denitration, dehydroxylation, and angular attack on substituted biphenyls and related compounds by a biphenyl dioxygenaseQ39503684
Aerobic metabolism of 4-hydroxybenzoic acid in Archaea via an unusual pathway involving an intramolecular migration (NIH shift).Q39676733
Characterization of PcaQ, a LysR-type transcriptional activator required for catabolism of phenolic compounds, from Agrobacterium tumefaciensQ39839796
Characterization of the genes encoding beta-ketoadipate: succinyl-coenzyme A transferase in Pseudomonas putidaQ39935327
Pathways of 4-hydroxybenzoate degradation among species of BacillusQ40025983
The beta-ketoadipate pathway and the biology of self-identityQ41199628
Acquisition of apparent DNA slippage structures during extensive evolutionary divergence of pcaD and catD genes encoding identical catalytic activities in Acinetobacter calcoaceticusQ42605665
The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transferQ42621657
Enhanced detection and characterization of protocatechuate 3,4-dioxygenase in Acinetobacter lwoffii K24 by proteomics using a column separation.Q44071619
Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440.Q44282474
Response to (chloro)biphenyls of the polychlorobiphenyl-degraderBurkholderia xenovoransLB400 involves stress proteins also induced by heat shock and oxidative stressQ44937336
MhbR, a LysR-type regulator involved in 3-hydroxybenzoate catabolism via gentisate in Klebsiella pneumoniae M5a1.Q45424280
Crystal structure of 3-hydroxybenzoate hydroxylase from Comamonas testosteroni has a large tunnel for substrate and oxygen access to the active siteQ48084053
Substitution of Arg214 at the substrate-binding site of p-hydroxybenzoate hydroxylase from Pseudomonas fluorescensQ48145493
Gentisate pathway in Salmonella typhimurium: metabolism of m-hydroxybenzoate and gentisateQ50172241
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue2
P407language of work or nameEnglishQ1860
P921main subjectBurkholderia xenovoransQ4999040
P304page(s)e56038
P577publication date2013-02-13
P1433published inPLOS OneQ564954
P1476titleGenomic and functional analyses of the gentisate and protocatechuate ring-cleavage pathways and related 3-hydroxybenzoate and 4-hydroxybenzoate peripheral pathways in Burkholderia xenovorans LB400.
P478volume8

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cites work (P2860)
Q36379358A functional 4-hydroxybenzoate degradation pathway in the phytopathogen Xanthomonas campestris is required for full pathogenicity
Q38201333Bioremediation of petroleum hydrocarbons: catabolic genes, microbial communities, and applications
Q37484916Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide.
Q35859740Draft Genome Sequence of Pseudomonas frederiksbergensis SI8, a Psychrotrophic Aromatic-Degrading Bacterium
Q35952276Genetic and Functional Analysis of the Biosynthesis of a Non-Ribosomal Peptide Siderophore in Burkholderia xenovorans LB400
Q35449833Genetic determinants involved in the biodegradation of naphthalene and phenanthrene in Pseudomonas aeruginosa PAO1.
Q48755842Genome analysis of crude oil degrading Franconibacter pulveris strain DJ34 revealed its genetic basis for hydrocarbon degradation and survival in oil contaminated environment
Q64071785Genomic and Physiological Traits of the Marine Bacterium QD168 Isolated From Quintero Bay, Central Chile, Reveal a Robust Adaptive Response to Environmental Stressors
Q35016808Genomic and functional analyses of the 2-aminophenol catabolic pathway and partial conversion of its substrate into picolinic acid in Burkholderia xenovorans LB400
Q37124862Has the bacterial biphenyl catabolic pathway evolved primarily to degrade biphenyl? The diphenylmethane case.
Q35085324Hydroxycinnamic Acid Degradation, a Broadly Conserved Trait, Protects Ralstonia solanacearum from Chemical Plant Defenses and Contributes to Root Colonization and Virulence
Q33577072Integration of bioinformatics to biodegradation.
Q93012099Long-chain flavodoxin FldX1 improves Paraburkholderia xenovorans LB400 tolerance to oxidative stress caused by paraquat and H2O2
Q93379611MarR Family Transcription Factors from Burkholderia Species: Hidden Clues to Control of Virulence-Associated Genes
Q35854617Metabolic Pathways for Degradation of Aromatic Hydrocarbons by Bacteria.
Q40080150Non-Coding RNAs are Differentially Expressed by Nocardia brasiliensis in Vitro and in Experimental Actinomycetoma
Q39033551Phenol degradation and genotypic analysis of dioxygenase genes in bacteria isolated from sediments
Q90332868Production and Characterization of Polyhydroxyalkanoate from Lignin Derivatives by Pandoraea sp. ISTKB
Q51596805Production of p-hydroxybenzoic acid from p-coumaric acid by Burkholderia glumae BGR1.
Q91638593Simultaneous 3-/4-Hydroxybenzoates Biodegradation and Arsenite Oxidation by Hydrogenophaga sp. H7
Q36245424p-Cymene Promotes Its Catabolism through the p-Cymene and the p-Cumate Pathways, Activates a Stress Response and Reduces the Biofilm Formation in Burkholderia xenovorans LB400.

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