Genomic and Physiological Traits of the Marine Bacterium QD168 Isolated From Quintero Bay, Central Chile, Reveal a Robust Adaptive Response to Environmental Stressors

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Genomic and Physiological Traits of the Marine Bacterium QD168 Isolated From Quintero Bay, Central Chile, Reveal a Robust Adaptive Response to Environmental Stressors is …
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scholarly articleQ13442814

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P356DOI10.3389/FMICB.2019.00528
P932PMC publication ID6460240
P698PubMed publication ID31024465

P50authorEduardo Castro-NallarQ42212469
Francisco Salvà-SerraQ59690200
Laura Rodríguez-CastroQ91527220
P2093author name stringMichael Seeger
Edward R B Moore
Valentina Méndez
Roberto E Durán
Bárbara Barra-Sanhueza
P2860cites workBLAST+: architecture and applicationsQ21284368
The Families and Genera of the Bacteria: Final Report of the Committee of the Society of American Bacteriologists on Characterization and Classification of Bacterial TypesQ24614749
Biopython: freely available Python tools for computational molecular biology and bioinformaticsQ24643426
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouseQ24679239
Nucleotide sequence and functional analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600Q24684543
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model SpaceQ27860804
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and UsabilityQ27860817
Alcaligenes faecalis subsp. parafaecalis subsp. nov., a bacterium accumulating poly-beta-hydroxybutyrate from acetone-butanol bioprocess residuesQ28201547
Alcaligenes faecalis subsp. phenolicus subsp. nov. a phenol-degrading, denitrifying bacterium isolated from a graywater bioprocessorQ28266761
2,4'-Dihydroxyacetophenone dioxygenase (EC 1.13.11.41) from Alcaligenes sp. 4HAP: a novel enzyme with an atypical dioxygenase sequenceQ28343704
Characterization of the metabolically modified heavy metal-resistant Cupriavidus metallidurans strain MSR33 generated for mercury bioremediationQ28741967
NCBI prokaryotic genome annotation pipelineQ28828718
Regulation of the Bacillus subtilis fur and perR genes by PerR: not all members of the PerR regulon are peroxide inducibleQ29346706
UniProt: a hub for protein informationQ29547457
Shifting the genomic gold standard for the prokaryotic species definitionQ29616599
Prokka: rapid prokaryotic genome annotationQ29616643
qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR dataQ29616810
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequencesQ30002335
Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.Q30455097
A heavy-metal tolerant novel bacterium, Alcaligenes pakistanensis sp. nov., isolated from industrial effluent in PakistanQ30984764
More than 2500 years of oil exposure shape sediment microbiomes with the potential for syntrophic degradation of hydrocarbons linked to methanogenesis.Q41274429
Identification of a new Alcaligenes faecalis strain MOR02 and assessment of its toxicity and pathogenicity to insects.Q41455331
Dioxygenation of the biphenyl dioxygenation productQ42188896
AliView: a fast and lightweight alignment viewer and editor for large datasetsQ42675816
Mineralization of PCBs by the genetically modified strain Cupriavidus necator JMS34 and its application for bioremediation of PCBs in soilQ43087861
Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440.Q44282474
Response to (chloro)biphenyls of the polychlorobiphenyl-degraderBurkholderia xenovoransLB400 involves stress proteins also induced by heat shock and oxidative stressQ44937336
Biodegradation of Benzene, Toluene, Ethylbenzene, and o-, m-, and p-Xylenes by the Newly Isolated Bacterium Comamonas sp. JB.Q46723115
Draft Genome Sequence of Alcaligenes faecalis BDB4, a Polyaromatic Hydrocarbon-Degrading Bacterium Isolated from Crude Oil-Contaminated Soil.Q47122199
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of lifeQ47820232
Characterization of a high-affinity phenol hydroxylase from Comamonas testosteroni R5 by gene cloning, and expression in Pseudomonas aeruginosa PAO1cQ47904222
PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic AnalysesQ48031556
Characterization of the unique organization and co-regulation of a gene cluster required for phenol and benzene catabolism in Pseudomonas sp. M1.Q50916448
Genome sequencing and analysis of Alcaligenes faecalis subsp. phenolicus MB207Q53158699
A shared mechanism of SoxR activation by redox-cycling compounds.Q54367868
Living at the Frontiers of Life: Extremophiles in Chile and Their Potential for BioremediationQ58698017
Environmental Concentrations of Copper, Alone or in Mixture With Arsenic, Can Impact River Sediment Microbial Community Structure and FunctionsQ58780928
Complete Genome Sequence of the Marine Hydrocarbon Degrader Alcaligenes aquatilis QD168, Isolated from Crude Oil-Polluted Sediment of Quintero Bay, Central ChileQ61805348
Antioxidant compounds improved PCB-degradation by Burkholderia xenovorans strain LB400Q82812038
The complete genome sequence of Alcaligenes faecalis ZD02, a novel potential bionematocideQ86888159
Complete Genome Sequence of Alcaligenes Faecalis Strain JQ135, a Bacterium Capable of Efficiently Degrading Nicotinic AcidQ88288438
A Novel Degradation Mechanism for Pyridine Derivatives in Alcaligenes faecalis JQ135Q88867040
Complete Genome Sequence of Marinobacterium aestuarii ST58-10T, a Benzene-Degrading Bacterium Isolated from Estuarine SedimentQ90383182
Circular genome visualization and exploration using CGViewQ31120465
Alcaligenes endophyticus sp. nov., isolated from roots of Ammodendron bifoliumQ31148533
Isolation, gene detection and solvent tolerance of benzene, toluene and xylene degrading bacteria from nearshore surface water and Pacific Ocean sedimentQ33320553
Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134.Q33358902
The molecular mechanisms and physiological consequences of oxidative stress: lessons from a model bacteriumQ33601261
Genomic insights that advance the species definition for prokaryotesQ33850939
The homogentisate and homoprotocatechuate central pathways are involved in 3- and 4-hydroxyphenylacetate degradation by Burkholderia xenovorans LB400.Q33851651
OhrR is a repressor of ohrA, a key organic hydroperoxide resistance determinant in Bacillus subtilisQ33996467
Alkyl hydroperoxide reductase is the primary scavenger of endogenous hydrogen peroxide in Escherichia coliQ33997228
Glucose-6-phosphate dehydrogenase protects Escherichia coli from tellurite-mediated oxidative stressQ34044963
Genomic analysis of the potential for aromatic compounds biodegradation in BurkholderialesQ34057523
Redox-operated genetic switches: the SoxR and OxyR transcription factorsQ34141396
Biotransformation of benzene and toluene to catechols by phenol hydroxylase from Arthrobacter sp. W1.Q34362177
Marine microorganisms make a meal of oil.Q34496095
Genomic and functional analyses of the gentisate and protocatechuate ring-cleavage pathways and related 3-hydroxybenzoate and 4-hydroxybenzoate peripheral pathways in Burkholderia xenovorans LB400.Q34589766
Genomic and functional analyses of the 2-aminophenol catabolic pathway and partial conversion of its substrate into picolinic acid in Burkholderia xenovorans LB400Q35016808
Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatilityQ35108186
Expanded microbial genome coverage and improved protein family annotation in the COG databaseQ35254493
Microbial communities in oil-contaminated seawaterQ35802701
From Rare to Dominant: a Fine-Tuned Soil Bacterial Bloom during Petroleum Hydrocarbon BioremediationQ35847787
p-Cymene Promotes Its Catabolism through the p-Cymene and the p-Cumate Pathways, Activates a Stress Response and Reduces the Biofilm Formation in Burkholderia xenovorans LB400.Q36245424
Biodegradation of Picolinic Acid by a Newly Isolated Bacterium Alcaligenes faecalis Strain JQ135.Q36292645
Study on the biodegradation of crude oil by free and immobilized bacterial consortium in marine environmentQ36323924
The Genome Sequence of Alcaligenes faecalis NBIB-017 Contains Genes with Potentially High Activities against Erwinia carotovoraQ36776240
Draft genome sequence of atrazine-utilizing bacteria isolated from Indian agricultural soilQ37458410
Ectoines in cell stress protection: uses and biotechnological production.Q37769895
Bacterial stimulus perception and signal transduction: response to osmotic stressQ37770478
Bioremediation of petroleum hydrocarbons: catabolic genes, microbial communities, and applicationsQ38201333
Oxidative stress response in Pseudomonas putidaQ38222588
Draft Genome Sequence of Alcaligenes faecalis Strain IITR89, an Indole-Oxidizing Bacterium.Q38769781
Lineage-specific SoxR-mediated Regulation of an Endoribonuclease Protects Non-enteric Bacteria from Redox-active CompoundsQ39147466
Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600Q39930931
Genomic Characterization of VIM metallo-β-lactamase-producing Alcaligenes faecalis from GAZA, PalestineQ40067393
Phenanthrene-degrading phenotype of Alcaligenes faecalis AFK2.Q40069790
JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison.Q40312977
The Utilization of Certain Hydrocarbons by Microorganisms.Q40702778
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P407language of work or nameEnglishQ1860
P921main subjectAlcaligenes aquatilisQ16960690
physiological traitQ113269733
environmental stressorQ122355352
P304page(s)528
P577publication date2019-04-05
P1433published inFrontiers in MicrobiologyQ27723481
P1476titleGenomic and Physiological Traits of the Marine Bacterium Alcaligenes aquatilis QD168 Isolated From Quintero Bay, Central Chile, Reveal a Robust Adaptive Response to Environmental Stressors
P478volume10

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cites work (P2860)
Q92526050Draft Genome Sequences of Two Pseudomonas Strains That Are Able To Use Furan Derivatives as Their Sole Carbon Source
Q93012099Long-chain flavodoxin FldX1 improves Paraburkholderia xenovorans LB400 tolerance to oxidative stress caused by paraquat and H2O2
Q94069543The genome of Alcaligenes aquatilis strain BU33N: Insights into hydrocarbon degradation capacity

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