Genomewide comparative analysis of alternative splicing in plants

scholarly article

Genomewide comparative analysis of alternative splicing in plants is …
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scholarly articleQ13442814

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P819ADS bibcode2006PNAS..103.7175W
P356DOI10.1073/PNAS.0602039103
P932PMC publication ID1459036
P698PubMed publication ID16632598
P5875ResearchGate publication ID7147405

P2093author name stringVolker Brendel
Bing-Bing Wang
P2860cites workThe Genomes of Oryza sativa: a history of duplicationsQ21146376
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
The ASRG database: identification and survey of Arabidopsis thaliana genes involved in pre-mRNA splicingQ24791274
Full-length messenger RNA sequences greatly improve genome annotationQ24796520
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAsQ28131821
Mechanisms of alternative pre-messenger RNA splicingQ28131822
Nonsense-mediated mRNA decay: terminating erroneous gene expressionQ28261899
Exon recognition in vertebrate splicingQ29615088
Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humansQ29615184
A rule for termination-codon position within intron-containing genes: when nonsense affects RNA abundanceQ29615731
A genomic view of alternative splicingQ29615892
Improving the Arabidopsis genome annotation using maximal transcript alignment assembliesQ29617550
Genome-wide detection of alternative splicing in expressed sequences of human genesQ29618541
Transcriptome and genome conservation of alternative splicing events in humans and mice.Q30753313
A starch-branching enzyme gene in wheat produces alternatively spliced transcriptsQ30795541
Genome wide identification and classification of alternative splicing based on EST dataQ30926705
Low conservation of alternative splicing patterns in the human and mouse genomes.Q31142924
Identification and analysis of alternative splicing events conserved in human and mouseQ33841124
Pre-mRNA splicing in higher plants.Q33877276
A computational analysis of sequence features involved in recognition of short intronsQ33944374
Alternative splicing and genome complexityQ33956410
Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cellsQ34419722
Intron-exon structures of eukaryotic model organismsQ34504653
Function of alternative splicingQ34554255
PlantGDB, plant genome database and analysis toolsQ34927332
Conservation of human alternative splice events in mouseQ35017927
Gene structure prediction and alternative splicing analysis using genomically aligned ESTsQ35032875
Alternative splicing and proteome diversity in plants: the tip of the iceberg has just emergedQ35558634
Database and analyses of known alternatively spliced genes in plantsQ35581303
How prevalent is functional alternative splicing in the human genome?Q35640491
The evolving roles of alternative splicingQ35802638
Promoter usage and alternative splicingQ36131493
Alternatively spliced N resistance gene transcripts: their possible role in tobacco mosaic virus resistanceQ37122727
The institute for genomic research Osa1 rice genome annotation databaseQ38520454
Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequencesQ40156768
ZEMa, a member of a novel group of MADS box genes, is alternatively spliced in maize endospermQ40394479
Frequent alternative splicing of human genesQ40414677
Arabidopsis intron mutations and pre-mRNA splicingQ41254418
Alternative mRNA splicing generates the two ribulosebisphosphate carboxylase/oxygenase activase polypeptides in spinach and ArabidopsisQ43405432
Autoregulation of polypyrimidine tract binding protein by alternative splicing leading to nonsense-mediated decayQ44734157
Refined annotation of the Arabidopsis genome by complete expressed sequence tag mappingQ47834301
Characterization of exon skipping mutants of the COP1 gene from ArabidopsisQ48021642
FCA, a gene controlling flowering time in Arabidopsis, encodes a protein containing RNA-binding domains.Q48049549
Structure and expression of a plant U1 snRNP 70K gene: alternative splicing of U1 snRNP 70K pre-mRNAs produces two different transcriptsQ48061610
The genome sequence and structure of rice chromosome 1.Q48272325
Incorporation of splice site probability models for non-canonical introns improves gene structure prediction in plants.Q48466246
Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.Q48560617
Intron retention is a major phenomenon in alternative splicing in Arabidopsis.Q51990713
The Arabidopsis splicing factor SR1 is regulated by alternative splicing.Q52168392
Species-specific variation of alternative splicing and transcriptional initiation in six eukaryotes.Q52661602
U-richness is a defining feature of plant introns and may function as an intron recognition signal in maize.Q52900886
Sequence and analysis of rice chromosome 4.Q52945943
EST comparison indicates 38% of human mRNAs contain possible alternative splice forms.Q52971558
Arabidopsis consensus intron sequencesQ71938469
Construction of a novel database containing aberrant splicing mutations of mammalian genesQ72375551
UPF3 suppresses aberrant spliced mRNA in ArabidopsisQ81055126
Alternative splicing of conserved exons is frequently species-specific in human and mouseQ81299363
Features of Arabidopsis genes and genome discovered using full-length cDNAsQ82489697
P433issue18
P407language of work or nameEnglishQ1860
P921main subjectalternative mRNA splicing, via spliceosomeQ21114084
P304page(s)7175-7180
P577publication date2006-04-21
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleGenomewide comparative analysis of alternative splicing in plants
P478volume103

Reverse relations

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