| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/bioinformatics/LindgreenGK07 |
| P356 | DOI | 10.1093/BIOINFORMATICS/BTM525 |
| P698 | PubMed publication ID | 18006551 |
| P5875 | ResearchGate publication ID | 5839624 |
| P50 | author | Anders Krogh | Q4753847 |
| Paul Gardner | Q37392651 | ||
| Stinus Lindgreen | Q56480652 | ||
| P2860 | cites work | RNA structure: bioinformatic analysis | Q36840337 |
| Multiple alignment using simulated annealing: branch point definition in human mRNA splicing | Q40422384 | ||
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| Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome | Q56272005 | ||
| Identification and classification of conserved RNA secondary structures in the human genome | Q21145687 | ||
| Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering | Q21563506 | ||
| SimulFold: simultaneously inferring RNA structures including pseudoknots, alignments, and trees using a Bayesian MCMC framework | Q21563523 | ||
| CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice | Q24286950 | ||
| A benchmark of multiple sequence alignment programs upon structural RNAs | Q24523666 | ||
| A comprehensive comparison of multiple sequence alignment programs | Q24548825 | ||
| Rfam: annotating non-coding RNAs in complete genomes | Q24558580 | ||
| Abstract shapes of RNA | Q24564555 | ||
| Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information | Q24602467 | ||
| A statistical sampling algorithm for RNA secondary structure prediction | Q24617509 | ||
| Pfold: RNA secondary structure prediction using stochastic context-free grammars | Q24671753 | ||
| Automated de novo prediction of native-like RNA tertiary structures | Q24673712 | ||
| Optimization by Simulated Annealing | Q25939004 | ||
| Vienna RNA secondary structure server | Q28131816 | ||
| Secondary structure prediction for aligned RNA sequences | Q28206303 | ||
| Dynalign: an algorithm for finding the secondary structure common to two RNA sequences | Q28208082 | ||
| Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution | Q28241731 | ||
| Alignment of RNA base pairing probability matrices | Q28255564 | ||
| The equilibrium partition function and base pair binding probabilities for RNA secondary structure | Q28261689 | ||
| Measuring covariation in RNA alignments: physical realism improves information measures | Q28268281 | ||
| Pairwise local structural alignment of RNA sequences with sequence similarity less than 40% | Q28303040 | ||
| MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons. | Q33217668 | ||
| Multiple structural alignment and clustering of RNA sequences | Q33275677 | ||
| RNA secondary structure prediction using stochastic context-free grammars and evolutionary history | Q33866236 | ||
| Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction | Q34434090 | ||
| RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment | Q34632862 | ||
| Finding the most significant common sequence and structure motifs in a set of RNA sequences | Q34635992 | ||
| RNA folding and unfolding | Q35802672 | ||
| Bridging the gap in RNA structure prediction. | Q36769213 | ||
| P433 | issue | 24 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | simulated annealing | Q863783 |
| P1104 | number of pages | 8 | |
| P304 | page(s) | 3304-3311 | |
| P577 | publication date | 2007-11-15 | |
| P1433 | published in | Bioinformatics | Q4914910 |
| P1476 | title | MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing | |
| P478 | volume | 23 |
| Q28552325 | A Dynamic 3D Graphical Representation for RNA Structure Analysis and Its Application in Non-Coding RNA Classification |
| Q33695729 | A Review on Recent Computational Methods for Predicting Noncoding RNAs. |
| Q37283329 | A max-margin model for efficient simultaneous alignment and folding of RNA sequences |
| Q46765089 | A quantum-inspired genetic algorithm based on probabilistic coding for multiple sequence alignment |
| Q28750462 | Accurate and efficient reconstruction of deep phylogenies from structured RNAs |
| Q28709001 | CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction |
| Q34305656 | DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition |
| Q37139041 | Detecting and comparing non-coding RNAs in the high-throughput era |
| Q21284309 | Effects of using coding potential, sequence conservation and mRNA structure conservation for predicting pyrrolysine containing genes |
| Q28261562 | From consensus structure prediction to RNA gene finding |
| Q59806059 | Genome-wide identification and characterization of long non-coding RNAs during postnatal development of rabbit adipose tissue |
| Q33331006 | Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework |
| Q37315545 | Informatic resources for identifying and annotating structural RNA motifs |
| Q48191876 | Multi-objective pairwise RNA sequence alignment |
| Q24618202 | Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences |
| Q38651602 | Multiple sequence alignment modeling: methods and applications |
| Q33827018 | PicXAA-R: efficient structural alignment of multiple RNA sequences using a greedy approach |
| Q42071702 | PicXAA-Web: a web-based platform for non-progressive maximum expected accuracy alignment of multiple biological sequences |
| Q46300139 | Plant small RNAs: the essential epigenetic regulators of gene expression for salt-stress responses and tolerance. |
| Q24604545 | RNAG: a new Gibbs sampler for predicting RNA secondary structure for unaligned sequences |
| Q89473985 | RNAconTest: Comparing tools for non-coding RNA multiple sequence alignment based on structural consistency |
| Q42055092 | Regulatory element identification in subsets of transcripts: comparison and integration of current computational methods. |
| Q42535764 | Specific alignment of structured RNA: stochastic grammars and sequence annealing |
| Q35780036 | Statistical evaluation of improvement in RNA secondary structure prediction |
| Q41007693 | Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families |
| Q24608886 | TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences |
| Q24646102 | WAR: Webserver for aligning structural RNAs |
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